Robin Andersson

Robin Andersson

Associate Professor

ORCID: 0000-0003-1516-879X

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  1. Published

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Current challenges in understanding the role of enhancers in disease

    Zaugg, J. B., Sahlén, P., Andersson, Robin, Alberich-Jorda, M., de Laat, W., Deplancke, B., Ferrer, J., Mandrup, S., Natoli, G., Plewczynski, D., Rada-Iglesias, A. & Spicuglia, S., 2022, In: Nature Structural and Molecular Biology. 29, 12, p. 1148-1158 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The frequent evolutionary birth and death of functional promoters in mouse and human

    Young, R. S., Hayashizaki, Y., Andersson, Robin, Sandelin, Albin Gustav, Kawaji, H., Itoh, M., Lassmann, T., Carninci, P., Bickmore, W. A., Forrest, A. R. & Taylor, M. S., 2015, In: Genome Research. 25, p. 1546-1557 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity

    Wenger, Alice, Biran, Alva Ada, Alcaraz, N., Redó-Riveiro, A., Sell, Annika Charlotte, Krautz, Robert, Flury, Valentin, Reveron-Gomez, Nazaret, Solis-Mezarino, V., Völker-Albert, M., Imhof, A., Andersson, Robin, Brickman, Joshua Mark & Groth, Anja, 2023, In: Nature Genetics. 55, 9, p. 1567-1578 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    CAGE-defined promoter regions of the genes implicated in Rett Syndrome

    Vitezic, M., Bertin, N., Andersson, Robin, Lipovich, L., Kawaji, H., Lassmann, T., Sandelin, Albin Gustav, Heutink, P., Goldowitz, D., Ha, T., Zhang, P., Patrizi, A., Fagiolini, M., Forrest, A. R., Carninci, P. & Saxena, A., 2014, In: BMC Genomics. 15, 16 p., 1177.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    CAGEfightR: analysis of 5'-end data using R/Bioconductor

    Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, 2019, In: BMC Bioinformatics. 20, 13 p., 487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    CAGEfightR: Cap Analysis of Gene Expression (CAGE) in R/Bioconductor

    Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, Apr 2018

    Research output: Other contribution › Research

  8. Integrative epigenomic and genomic analysis of malignant pheochromocytoma

    Sandgren, J., Andersson, Robin, Rada-Iglesias, A., Enroth, S., Akerstrom, G., Dumanski, J. P., Komorowski, J., Westin, G. & Wadelius, C., 31 Jul 2010, In: Experimental & Molecular Medicine. 42, 7, p. 484-502 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Recurrent genomic alterations in benign and malignant pheochromocytomas and paragangliomas revealed by whole-genome array comparative genomic hybridization analysis

    Sandgren, J., Diaz de Ståhl, T., Andersson, Robin, Menzel, U., Piotrowski, A., Nord, H., Bäckdahl, M., Kiss, N. B., Brauckhoff, M., Komorowski, J., Dralle, H., Hessman, O., Larsson, C., Akerström, G., Bruder, C., Dumanski, J. P. & Westin, G., Sep 2010, In: Endocrine - Related Cancer. 17, 3, p. 561-79 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Marsico, A., Winther, Ole & Andersson, Robin, 2023, In: NAR Genomics and Bioinformatics. 5, 2, 10 p., 026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Transfer learning reveals sequence determinants of regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Winther, Ole & Andersson, Robin, 2022, bioRxiv, 24 p.

    Research output: Working paper › Preprint › Research

  12. Published

    Analysis of the DNA methylome and transcriptome in granulopoiesis reveal timed changes and dynamic enhancer methylation

    Rönnerblad, M., Andersson, Robin, Olofsson, T., Douagi, I., Karimi, M., Lehmann, S., Hoof, I., de Hoon, M., Itoh, M., Nagao-Sato, S., Kawaji, H., Lassmann, T., Carninci, P., Hayashizaki, Y., Forrest, A. R. R., Sandelin, Albin Gustav, Ekwall, K., Arner, E. & Lennartsson, A., 2014, In: Blood. 123, 17

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    hyperTRIBER: a flexible R package for the analysis of differential RNA editing

    Rennie, Sarah, Magnusson, D. H. & Andersson, Robin, 2021, 12 p.

    Research output: Working paper › Preprint › Research

  14. Published

    Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions

    Rennie, Sarah, Dalby, M., van Duin, Lucas & Andersson, Robin, 2018, In: Nature Communications. 9, 16 p., 487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities

    Rennie, Sarah, Dalby, M., Lloret-Llinares, M., Bakoulis, Stylianos, Dalager Vaagensø, C., Jensen, T. H. & Andersson, Robin, 2018, In: Nucleic Acids Research. 46, 11, p. 5455-5469 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Histone H3 lysine 27 trimethylation in adult differentiated colon associated to cancer DNA hypermethylation

    Rada-Iglesias, A., Enroth, S., Andersson, Robin, Wanders, A., Påhlman, L., Komorowski, J. & Wadelius, C., 16 Feb 2009, In: Epigenetics : official journal of the DNA Methylation Society. 4, 2, p. 107-13 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Frequent genetic differences between matched primary and metastatic breast cancer provide an approach to identification of biomarkers for disease progression

    Popławski, A. B., Jankowski, M., Erickson, S. W., Díaz de Ståhl, T., Partridge, E. C., Crasto, C., Guo, J., Gibson, J., Menzel, U., Bruder, C. E., Kaczmarczyk, A., Benetkiewicz, M., Andersson, R., Sandgren, J., Zegarska, B., Bała, D., Srutek, E., Allison, D. B., Piotrowski, A., Zegarski, W. & 1 others, Dumanski, J. P., May 2010, In: European Journal of Human Genetics. 18, 5, p. 560-8 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Somatic mosaicism for copy number variation in differentiated human tissues

    Piotrowski, A., Bruder, C. E. G., Andersson, Robin, Diaz de Ståhl, T., Menzel, U., Sandgren, J., Poplawski, A., von Tell, D., Crasto, C., Bogdan, A., Bartoszewski, R., Bebok, Z., Krzyzanowski, M., Jankowski, Z., Partridge, E. C., Komorowski, J. & Dumanski, J. P., Sep 2008, In: Human Mutation. 29, 9, p. 1118-24 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq

    Petryk, N., Reveron-Gomez, Nazaret, González-Aguilera, C., Dalby, M., Andersson, Robin & Groth, Anja, 2021, In: Nature Protocols. 16, p. 4446-4493

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    MCM2 promotes symmetric inheritance of modified histones during DNA replication

    Petryk, N., Dalby, M., Wenger, Alice, Stromme, C. B., Strandsby, A., Andersson, Robin & Groth, Anja, 2018, In: Science. 361, 6409, p. 1389-1392 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Regulating retrotransposon activity through the use of alternative transcription start sites

    Persson, J., Steglich, B., Smialowska, A., Boyd, M., Lange, Jette Bornholdt, Andersson, Robin, Schurra, C., Arcangioli, B., Sandelin, Albin Gustav, Nielsen, Olaf & Ekwall, K., 2016, In: E M B O Reports. 17, 5, p. 753-768 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

    Pedersen, J. S., Valen, E., Velazquez, A. M. V., Parker, B. J., Rasmussen, M., Lindgreen, S., Lilje, B., Tobin, D. J., Kelly, T. K., Vang, S., Andersson, R., Jones, P. A., Hoover, C. A., Tikhonov, A., Prokhortchouk, E., Rubin, E. M., Sandelin, A. G., Gilbert, M. T. P., Krogh, A., Willerslev, E. & 1 others, Orlando, L. A. A., 2014, In: Genome Research. 24, 3, p. 454-466 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality

    Ntini, E., Järvelin, A. I., Lange, Jette Bornholdt, Chen, Y., Boyd, M., Jørgensen, M., Andersson, Robin, Hoof, I., Schein, A., Andersen, P. R., Andersen, P. K., Preker, P., Valen, E., Zhao, X., Pelechano, V., Steinmetz, L. M., Sandelin, Albin Gustav & Jensen, T. H., 2013, In: Nature Structural and Molecular Biology. 20, p. 923-928 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Characterization of novel and complex genomic aberrations in glioblastoma using a 32K BAC array

    Nord, H., Hartmann, C., Andersson, Robin, Menzel, U., Pfeifer, S., Piotrowski, A., Bogdan, A., Kloc, W., Sandgren, J., Olofsson, T., Hesselager, G., Blomquist, E., Komorowski, J., von Deimling, A., Bruder, C. E. G., Dumanski, J. P. & Díaz de Ståhl, T., Dec 2009, In: Neuro-Oncology. 11, 6, p. 803-18 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Overlapping phenotype of Wolf-Hirschhorn and Beckwith-Wiedemann syndromes in a girl with der(4)t(4;11)(pter;pter)

    Mikhail, F. M., Sathienkijkanchai, A., Robin, N. H., Prucka, S., Biggerstaff, J. S., Komorowski, J., Andersson, Robin, Bruder, C. E. G., Piotrowski, A., Diaz de Ståhl, T., Dumanski, J. P. & Carroll, A. J., 1 Aug 2007, In: American Journal of Medical Genetics. Part A. 143A, 15, p. 1760-6 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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