Robin Andersson
Associate Professor
Computational and RNA Biology
Ole Maaløes Vej 5
2200 København N.
RoSy: A Rough Knowledge Base System
Andersson, Robin, Vitória, A., Małuszyński, J. & Komorowski, J., 2005, Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing. Slezak, D., Yao, J., Peters, J. F., Ziarko, W. & Hu, X. (eds.). Springer, p. 48-58 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 3642 LNAI).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
A previously unrecognized microdeletion syndrome on chromosome 22 band q11.2 encompassing the BCR gene
Mikhail, F. M., Descartes, M., Piotrowski, A., Andersson, Robin, Diaz de Ståhl, T., Komorowski, J., Bruder, C. E. G., Dumanski, J. P. & Carroll, A. J., 15 Sep 2007, In: American Journal of Medical Genetics. Part A. 143A, 18, p. 2178-84 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A promoter-level mammalian expression atlas
Forest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., De Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jørgensen, M., Dimont, E., Arner, E., Schmidl, C., Schaefer, U. & 241 others, , 2014, In: Nature. 507, 7493, p. 462-470 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
A segmental maximum a posteriori approach to genome-wide copy number profiling
Andersson, Robin, Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Ståhl, T., Dumanski, J. P. & Komorowski, J., 15 Mar 2008, In: Bioinformatics (Online). 24, 6, p. 751-8 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.
Enroth, S., Andersson, C., Andersson, Robin, Wadelius, C., Gustafsson, M. & Komorowski, J., 2012, In: Algorithms for Molecular Biology. 7, 1, p. 2 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A unified architecture of transcriptional regulatory elements
Andersson, Robin, Sandelin, Albin Gustav & Danko, C. G., Aug 2015, In: Trends in Genetics. 31, 8, p. 426-433 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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An atlas of active enhancers across human cell types and tissues
Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Lange, J. B., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O. & 30 others, , 2014, In: Nature. 507, 7493, p. 455-461 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Analysis of the DNA methylome and transcriptome in granulopoiesis reveal timed changes and dynamic enhancer methylation
Rönnerblad, M., Andersson, Robin, Olofsson, T., Douagi, I., Karimi, M., Lehmann, S., Hoof, I., de Hoon, M., Itoh, M., Nagao-Sato, S., Kawaji, H., Lassmann, T., Carninci, P., Hayashizaki, Y., Forrest, A. R. R., Sandelin, Albin Gustav, Ekwall, K., Arner, E. & Lennartsson, A., 2014, In: Blood. 123, 17Research output: Contribution to journal › Journal article › Research › peer-review
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CAGE-defined promoter regions of the genes implicated in Rett Syndrome
Vitezic, M., Bertin, N., Andersson, Robin, Lipovich, L., Kawaji, H., Lassmann, T., Sandelin, Albin Gustav, Heutink, P., Goldowitz, D., Ha, T., Zhang, P., Patrizi, A., Fagiolini, M., Forrest, A. R., Carninci, P. & Saxena, A., 2014, In: BMC Genomics. 15, 16 p., 1177.Research output: Contribution to journal › Journal article › Research › peer-review
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CAGEfightR: analysis of 5'-end data using R/Bioconductor
Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, 2019, In: BMC Bioinformatics. 20, 13 p., 487.Research output: Contribution to journal › Journal article › Research › peer-review
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Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
Enroth, S., Rada-Iglesisas, A., Andersson, Robin, Wallerman, O., Wanders, A., Påhlman, L., Komorowski, J. & Wadelius, C., 2011, In: B M C Cancer. 11, 13 p., 450.Research output: Contribution to journal › Journal article › Research › peer-review
Characterization of novel and complex genomic aberrations in glioblastoma using a 32K BAC array
Nord, H., Hartmann, C., Andersson, Robin, Menzel, U., Pfeifer, S., Piotrowski, A., Bogdan, A., Kloc, W., Sandgren, J., Olofsson, T., Hesselager, G., Blomquist, E., Komorowski, J., von Deimling, A., Bruder, C. E. G., Dumanski, J. P. & Díaz de Ståhl, T., Dec 2009, In: Neuro-Oncology. 11, 6, p. 803-18 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies
Boyd, M., Thodberg, M., Vitezic, M., Lange, J. B., Vitting-Seerup, K., Chen, Y., Coskun, M., Li, Y., Lo, B. Z. S., Klausen, P., Schweiger, P., Pedersen, A. G., Rapin, N. P. J-P., Skovgaard, K., Dahlgaard, K., Andersson, R., Terkelsen, T. B., Lilje, B., Troelsen, J. T., Petersen, A. M. & 7 others, , 2018, In: Nature Communications. 9, 19 p., 1661.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative transcriptomics of primary cells in vertebrates
Alam, T., Agrawal, S., Severin, J., Young, R. S., Andersson, R., Arner, E., Hasegawa, A., Lizio, M., Ramilowski, J. A., Abugessaisa, I., Ishizu, Y., Noma, S., Tarui, H., Taylor, M. S., Lassmann, T., Itoh, M., Kasukawa, T., Kawaji, H., Marchionni, L., Sheng, G. & 5 others, , 2020, In: Genome Research. 30, 7, p. 951-961 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Current challenges in understanding the role of enhancers in disease
Zaugg, J. B., Sahlén, P., Andersson, Robin, Alberich-Jorda, M., de Laat, W., Deplancke, B., Ferrer, J., Mandrup, S., Natoli, G., Plewczynski, D., Rada-Iglesias, A. & Spicuglia, S., 2022, In: Nature Structural and Molecular Biology. 29, 12, p. 1148-1158 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
Fort, A., Hashimoto, K., Yamada, D., Salimullah, M., Keya, C. A., Saxena, A., Bonetti, A., Voineagu, I., Bertin, N., Kratz, A., Noro, Y., Wong, C-H., de Hoon, M., Andersson, R., Sandelin, A. G., Suzuki, H., Wei, C-L., Koseki, H., Hasegawa, Y., Forrest, A. R. R. & 2 others, , 2014, In: Nature Genetics. 46, 6, p. 558-566 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Determinants of enhancer and promoter activities of regulatory elements
Andersson, Robin & Sandelin, Albin Gustav, 2020, In: Nature Reviews Genetics. 21, 2, p. 71-87 17 p.Research output: Contribution to journal › Review › Research › peer-review
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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S. & 31 others, , 2021, In: Nature Communications. 12, 18 p., 3297.Research output: Contribution to journal › Journal article › Research › peer-review
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Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells
Bakoulis, Stylianos, Krautz, Robert, Alcaraz, N., Salvatore, Marco & Andersson, Robin, 2022, In: Nucleic acids symposium series. 50, 4, p. 2111-2127 17 p., 088.Research output: Contribution to journal › Journal article › Research › peer-review
Frequent genetic differences between matched primary and metastatic breast cancer provide an approach to identification of biomarkers for disease progression
Popławski, A. B., Jankowski, M., Erickson, S. W., Díaz de Ståhl, T., Partridge, E. C., Crasto, C., Guo, J., Gibson, J., Menzel, U., Bruder, C. E., Kaczmarczyk, A., Benetkiewicz, M., Andersson, R., Sandgren, J., Zegarska, B., Bała, D., Srutek, E., Allison, D. B., Piotrowski, A., Zegarski, W. & 1 others, , May 2010, In: European Journal of Human Genetics. 18, 5, p. 560-8 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq
Petryk, N., Reveron-Gomez, Nazaret, González-Aguilera, C., Dalby, M., Andersson, Robin & Groth, Anja, 2021, In: Nature Protocols. 16, p. 4446-4493Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide high-resolution analysis of DNA copy number alterations in NF1-associated malignant peripheral nerve sheath tumors using 32K BAC array
Mantripragada, K. K., Díaz de Ståhl, T., Patridge, C., Menzel, U., Andersson, Robin, Chuzhanova, N., Kluwe, L., Guha, A., Mautner, V., Dumanski, J. P. & Upadhyaya, M., Oct 2009, In: Genes, Chromosomes & Cancer. 48, 10, p. 897-907 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
Pedersen, J. S., Valen, E., Velazquez, A. M. V., Parker, B. J., Rasmussen, M., Lindgreen, S., Lilje, B., Tobin, D. J., Kelly, T. K., Vang, S., Andersson, R., Jones, P. A., Hoover, C. A., Tikhonov, A., Prokhortchouk, E., Rubin, E. M., Sandelin, A. G., Gilbert, M. T. P., Krogh, A., Willerslev, E. & 1 others, , 2014, In: Genome Research. 24, 3, p. 454-466 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Histone H3 lysine 27 trimethylation in adult differentiated colon associated to cancer DNA hypermethylation
Rada-Iglesias, A., Enroth, S., Andersson, Robin, Wanders, A., Påhlman, L., Komorowski, J. & Wadelius, C., 16 Feb 2009, In: Epigenetics : official journal of the DNA Methylation Society. 4, 2, p. 107-13 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 32384007
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Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2
Research output: Contribution to journal › Journal article › Research › peer-review
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1381
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Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1065
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A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.
Research output: Contribution to journal › Journal article › Research › peer-review
Published