Robin Andersson
Associate Professor
Computational and RNA Biology
Ole Maaløes Vej 5
2200 København N.
- Published
Transcriptional dynamics during human adipogenesis and its link to adipose morphology and distribution
Ehrlund, A., Mejhert, N., Björk, C., Andersson, Robin, Kulyté, A., Åström, G., Itoh, M., Kawaji, H., Lassmann, T., Daub, C. O., Carninci, P., Forrest, A. R. R., Hayashizaki, Y., Sandelin, Albin Gustav, Ingelsson, E., FANTOM Consortium, Rydén, M., Laurencikiene, J., Arner, P. & Arner, E., 2017, In: Diabetes. 66, 1, p. 218-230 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Promoter sequence and architecture determine expression variability and confer robustness to genetic variants
Einarsson, H., Salvatore, Marco, Vaagenso, C., Alcaraz, N., Lange, Jette Bornholdt, Rennie, Sarah & Andersson, Robin, 2022, In: eLife. 2022, 36 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
Enroth, S., Rada-Iglesisas, A., Andersson, Robin, Wallerman, O., Wanders, A., Påhlman, L., Komorowski, J. & Wadelius, C., 2011, In: B M C Cancer. 11, 13 p., 450.Research output: Contribution to journal › Journal article › Research › peer-review
SICTIN: Rapid footprinting of massively parallel sequencing data
Enroth, S., Andersson, Robin, Wadelius, C. & Komorowski, J., 2010, In: BioData Mining. 3, 1, p. 4Research output: Contribution to journal › Journal article › Research › peer-review
Nucleosome regulatory dynamics in response to TGFβ
Enroth, S., Andersson, Robin, Bysani, M., Wallerman, O., Termén, S., Tuch, B. B., de la Vega, F. M., Heldin, C., Moustakas, A., Komorowski, J. & Wadelius, C., 2014, In: Nucleic Acids Research. 42, 11, p. 6921-6934 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.
Enroth, S., Andersson, C., Andersson, Robin, Wadelius, C., Gustafsson, M. & Komorowski, J., 2012, In: Algorithms for Molecular Biology. 7, 1, p. 2 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A promoter-level mammalian expression atlas
Forest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., De Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jørgensen, M., Dimont, E., Arner, E., Schmidl, C., Schaefer, U. & 241 others, , 2014, In: Nature. 507, 7493, p. 462-470 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
Fort, A., Hashimoto, K., Yamada, D., Salimullah, M., Keya, C. A., Saxena, A., Bonetti, A., Voineagu, I., Bertin, N., Kratz, A., Noro, Y., Wong, C-H., de Hoon, M., Andersson, R., Sandelin, A. G., Suzuki, H., Wei, C-L., Koseki, H., Hasegawa, Y., Forrest, A. R. R. & 2 others, , 2014, In: Nature Genetics. 46, 6, p. 558-566 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1
Gazova, I., Lefevre, L., Bush, S. J., Clohisey, S., Arner, E., de Hoon, M., Severin, J., van Duin, Lucas, Andersson, Robin, Lengeling, A., Hume, D. A. & Summers, K. M., 2020, In: Frontiers in Cell and Developmental Biology. 8, 21 p., 498.Research output: Contribution to journal › Journal article › Research › peer-review
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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S. & 31 others, , 2021, In: Nature Communications. 12, 18 p., 3297.Research output: Contribution to journal › Journal article › Research › peer-review
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Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes
Grarup, Niels, Moltke, Ida, Lepola, Mette Andersen, Dalby, M., Vitting-Seerup, K., Kern, T. S., Mahendran, Y., Jørsboe, E., Larsen, C. V. L., Dahl-Petersen, I. K., Gilly, A., Suveges, D., Dedoussis, G., Zeggini, E., Pedersen, Oluf Borbye, Andersson, Robin, Bjerregaard, P., Jørgensen, M. E., Albrechtsen, Anders & Hansen, Torben, 2018, In: Nature Genetics. 50, 2, p. 172-174 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The constrained maximal expression level owing to haploidy shapes gene content on the mammalian X chromosome
Hurst, L. D., Ghanbarian, A. T., Forrest, A. R. R., Huminiecki, L., Rehli, M., Kenneth Baillie, J., de Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jørgensen, M., Dimont, E., Arner, E. & 243 others, , 2015, In: PLoS Biology. 13, 12, 48 p., e1002315.Research output: Contribution to journal › Journal article › Research › peer-review
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On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase
Ienasescu, H., Li, K., Andersson, Robin, Vitezic, M., Rennie, Sarah, Chen, Y., Vitting-Seerup, K., Lagoni, E., Boyd, M., Lange, Jette Bornholdt, de Hoon, M. J. L., Kawaji, H., Lassmann, T., FANTOM Consortium, F. C., Hayashizaki, Y., Forrest, A. R. R., Carninci, P. & Sandelin, Albin Gustav, 2016, In: Database: The Journal of Biological Databases and Curation. 2016, 0, 10 p., baw144.Research output: Contribution to journal › Journal article › Research › peer-review
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MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch
Jakobsen, S. T., Jensen, R. A. M., Madsen, M. S., Ravnsborg, T., Vaagenso, C. S., Siersbæk, M. S., Einarsson, H., Andersson, Robin, Jensen, O. N. & Siersbæk, R., 2024, In: Nature Genetics. 56, p. 663–674 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The GBAF chromatin remodeling complex binds H3K27ac and mediates enhancer transcription
Jefimov, K., Alcaraz, N., Kloet, S. L., Värv, S., Sakya, S. A., Vaagenso, C., Vermeulen, M., Aasland, R. & Andersson, Robin, 2018, 31 p.Research output: Working paper › Preprint › Research
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Transcriptome analysis of recurrently deregulated genes across multiple cancers identifies new pan-cancer biomarkers
Kaczkowski, B., Tanaka, Y., Kawaji, H., Sandelin, Albin Gustav, Andersson, Robin, Itoh, M., Lassmann, T., the FANTOM5 consortium, Hayashizaki, Y., Carninci, P. & Forrest, A. R. R., 2016, In: Cancer Research. 76, 2, p. 216-226Research output: Contribution to journal › Journal article › Research › peer-review
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Identification of gene transcription start sites and enhancers responding to pulmonary carbon nanotube exposure in Vivo
Lange, Jette Bornholdt, Saber, A. T., Lilje, B., Boyd, M., Jørgensen, M., Chen, Y., Vitezic, M., Jacobsen, N. R., Poulsen, S. S., Berthing, T., Bressendorff, Simon, Vitting-Seerup, K., Andersson, Robin, Hougaard, K. S., Yauk, C. L., Halappanavar, S., Wallin, E. H. R., Vogel, U. & Sandelin, Albin Gustav, 2017, In: A C S Nano. 11, 4, p. 3597-3613 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors
Lennartsson, A., Arner, E., Fagiolini, M., Saxena, A., Andersson, Robin, Takahashi, H., Noro, Y., Sng, J., Sandelin, Albin Gustav, Hensch, T. K. & Carninci, P., 2015, In: Epigenetics & Chromatin. 8, 15 p., 55.Research output: Contribution to journal › Journal article › Research › peer-review
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Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
Lizio, M., Harshbarger, J., Abugessaisa, I., Noguchi, S., Kondo, A., Severin, J., Mungall, C., Arenillas, D., Mathelier, A., Medvedeva, Y. A., Lennartsson, A., Drabløs, F., Ramilowski, J. A., Rackham, O., Gough, J., Andersson, R., Sandelin, A. G., Ienasescu, H-I., Ono, H., Bono, H. & 5 others, , 2017, In: Nucleic Acids Research. 45, D1, p. D737-D743 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The RNA exosome contributes to gene expression regulation during stem cell differentiation
Llinares, M. L., Karadoulama, Evdoxia, Chen, Y., Wojenski, L. A., Villafano, G. J., Lange, Jette Bornholdt, Andersson, Robin, Core, L., Sandelin, Albin Gustav & Jensen, T. H., 2018, In: Nucleic Acids Research. 46, 21, p. 11502-11513Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide high-resolution analysis of DNA copy number alterations in NF1-associated malignant peripheral nerve sheath tumors using 32K BAC array
Mantripragada, K. K., Díaz de Ståhl, T., Patridge, C., Menzel, U., Andersson, Robin, Chuzhanova, N., Kluwe, L., Guha, A., Mautner, V., Dumanski, J. P. & Upadhyaya, M., Oct 2009, In: Genes, Chromosomes & Cancer. 48, 10, p. 897-907 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Pooled analysis of frontal lobe transcriptomic data identifies key mitophagy gene changes in Alzheimer's disease brain
Mei, T., Li, Yuan, Orduña Dolado, A., Li, Zhiquan, Andersson, Robin, Berliocchi, Laura & Rasmussen, Lene Juel, 2023, In: Frontiers in Aging Neuroscience. 15, 14 p., 1101216.Research output: Contribution to journal › Journal article › Research › peer-review
Overlapping phenotype of Wolf-Hirschhorn and Beckwith-Wiedemann syndromes in a girl with der(4)t(4;11)(pter;pter)
Mikhail, F. M., Sathienkijkanchai, A., Robin, N. H., Prucka, S., Biggerstaff, J. S., Komorowski, J., Andersson, Robin, Bruder, C. E. G., Piotrowski, A., Diaz de Ståhl, T., Dumanski, J. P. & Carroll, A. J., 1 Aug 2007, In: American Journal of Medical Genetics. Part A. 143A, 15, p. 1760-6 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
A previously unrecognized microdeletion syndrome on chromosome 22 band q11.2 encompassing the BCR gene
Mikhail, F. M., Descartes, M., Piotrowski, A., Andersson, Robin, Diaz de Ståhl, T., Komorowski, J., Bruder, C. E. G., Dumanski, J. P. & Carroll, A. J., 15 Sep 2007, In: American Journal of Medical Genetics. Part A. 143A, 18, p. 2178-84 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Characterization of novel and complex genomic aberrations in glioblastoma using a 32K BAC array
Nord, H., Hartmann, C., Andersson, Robin, Menzel, U., Pfeifer, S., Piotrowski, A., Bogdan, A., Kloc, W., Sandgren, J., Olofsson, T., Hesselager, G., Blomquist, E., Komorowski, J., von Deimling, A., Bruder, C. E. G., Dumanski, J. P. & Díaz de Ståhl, T., Dec 2009, In: Neuro-Oncology. 11, 6, p. 803-18 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 32384007
Most downloads
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1910
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Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2
Research output: Contribution to journal › Journal article › Research › peer-review
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1381
downloads
Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1067
downloads
A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.
Research output: Contribution to journal › Journal article › Research › peer-review
Published