Søren Johannes Sørensen

Søren Johannes Sørensen

Professor

ORCID: 0000-0001-6227-9906

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  1. Published

    Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk

    U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

    Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Bacteria in the first void urine of urethritis patients and healthy controls analysed by 454 high throughput senquencing

    Ahrens, P., Frølund, M., Abu Al-Soud, W., Wikström, A., Lidbrink, P., Cullberg, M., Sørensen, Søren Johannes & Jensen, J. S., 2012.

    Research output: Contribution to conference › Poster › Research

  4. Published

    Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis

    Andersen, Sandra Breum, Hansen, Lars Hestbjerg, Sapountzis, P., Sørensen, Søren Johannes & Boomsma, Jacobus J., 2013, In: Molecular Ecology. 22, 16, p. 4307-4321 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Unexpected diversity among small-scale sample replicates of defined plant root compartments

    Attia, S., Russel, J., Mortensen, M. S., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2022, In: ISME Journal. 16, 4, p. 997-1003 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Impact of long-term agricultural management practices on soil prokaryotic communities

    Babin, D., Deubel, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Geistlinger, J., Grosch, R. & Smalla, K., 2019, In: Soil Biology & Biochemistry. 129, p. 17-28

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories

    Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law

    Baert, J., Kinet, R., Brognaux, A., Delepierre, A., Telek, S., Sørensen, Søren Johannes, Riber, Leise, Fickers, P. & Delvigne, F., 2015, In: Biotechnology Journal. 10, 8, p. 1316-1325 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Effect of tetracycline on transfer and establishment of the tetracycline-inducible conjugative transposon Tn916 in the gut of gnotobiotic rats

    Bahl, M. I., Sørensen, Søren Johannes, Hansen, L. H. & Licht, T. R., 2003, In: Applied and Environmental Microbiology. ., p. .

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    In vivo detection and quantification of tetracycline by use of a whole-cell biosensor in the intestine of rats

    Bahl, M. I., Hansen, L. H., Licht, T. R. & Sørensen, Søren Johannes, 2003, In: Antimicrobial Agents and Chemotherapy. ., p. .

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat

    Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. & Sørensen, Søren Johannes, 2007, In: Applied and Environmental Microbiology. 73, 1, p. 341-343

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains: Genomes in Flux

    Bahl, M. I., Oregaard, G., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2009, Horizontal Gene Transfer. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 257-268 (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  15. Published

    In Vivo Detection and Quantification of Tetracycline by Use of a Whole-Cell Biosensor in the Rat Intestine

    Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. R. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 4, p. 1112-1117

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Quantification of plasmid loss in Escherichia coli cells by use of flow cytometry

    Bahl, M. I., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2004, In: FEMS Microbiology Letters. 232, 1, p. 45-49

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene

    Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2005, In: FEMS Microbiology Letters. 253, 2, p. 201-205

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant

    Bahl, M. I., Burmølle, Mette, Meisner, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Plasmid. 62, 2, p. 134-139 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations

    Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2007, In: FEMS Microbiology Letters. 266, p. 250-256

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups

    Bahl, M. I., Hansen, Lars Hestbjerg, Goesmann, A. & Sørensen, Søren Johannes, 2007, In: Plasmid. 58, 1, p. 31-43

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Effect of Tetracycline on Transfer and Establishment of the Tetracycline-Inducible Conjugative Transposon Tn916 in the Guts of Gnotobiotic Rats

    Bahl, M. I., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Licht, T. R., 2004, In: Applied and Environmental Microbiology. 70, 2, p. 758-764

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Persistence Mechanisms of Conjugative Plasmids

    Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, Horizontal Gene Transfer: Genomes in Flux. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 73-102 (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  23. Published

    Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis

    Balbín-Suárez, A., Jacquiod, S., Rohr, A. D., Liu, B., Flachowsky, H., Winkelmann, T., Beerhues, L., Nesme, Joseph, Sørensen, Søren Johannes, Vetterlein, D. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 4, 14 p., fiab031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Exploring microbial determinants of apple replant disease (ARD): a microhabitat approach under split-root design

    Balbín-Suárez, A., Lucas, M., Vetterlein, D., Sørensen, Søren Johannes, Winkelmann, T., Smalla, K. & Jacquiod, S., 2020, In: FEMS Microbiology Ecology. 96, 12, 12 p., fiaa211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The murine lung microbiome in relation to the intestinal and vaginal bacterial communities

    Barfod, K. K., Roggenbuck, M., Hansen, Lars Hestbjerg, Schjørring, S., Larsen, S. T., Sørensen, Søren Johannes & Krogfelt, K. A., 2013, In: B M C Microbiology. 13, 12 p., 303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Alterations of the murine gut microbiome in allergic airway disease are independent of surfactant protein D

    Barfod, K. K., Roggenbuck, M., Al-Shuweli, S., Fakih, D., Sørensen, Søren Johannes & Sørensen, G. L., Mar 2017, In: Heliyon. 3, 3, 19 p., e00262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain

    Bartels, Mette Damkjær, Hansen, Lars Hestbjerg, Boye, K., Sørensen, Søren Johannes & Westh, Henrik T., 2011, In: P L o S One. 6, 1, 5 p., e16193.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Rose replant disease: detailed analyses of plant reactions, root endophytes and rhizosphere microbial communities

    Baumann, A., Yim, B., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Acta Horticulturae. 1283, p. 97-104 8 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  29. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium

    Behrendt, L., Brejnrod, A. D., Schliep, M., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2015, In: The ISME Journal. 9, 9, p. 2108-2111 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  31. Published

    New ecological niches and habitats for Chlorophyll d- containing cyanobacteria

    Behrendt, L., Chen, M., Larkum, A. W. D., Ralph, P. J., Sørensen, Søren Johannes, Trampe, E. & Kühl, Michael, 2010.

    Research output: Contribution to conference › Poster › Research

  32. Published

    Endolithic chlorophyll d-containing phototrophs

    Behrendt, L., Larkum, A. W. D., Norman, A., Qvortrup, Klaus, Chen, M., Ralph, P., Sørensen, Søren Johannes, Trampe, Erik & Kühl, Michael, 2011, In: I S M E Journal. 5, 6, p. 1072-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina

    Behrendt, L., Raina, J., Lutz, A., Kot, W., Albertsen, M., Nielsen, P. H., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2018, In: I S M E Journal. 12, p. 556–567 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella

    Behrendt, L., Larkum, A. W. D., Trampe, Erik, Norman, A., Sørensen, Søren Johannes & Kühl, Michael, 2012, In: I S M E Journal. 6, p. 1222-1237 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Biofilm growth and near infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina

    Behrendt, L., Schrameyer, V., Qvortrup, Klaus, Neves Lundin, A. L., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2012, In: Applied and Environmental Microbiology. 78, 11, p. 3896-3904 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris

    Behrendt, L., Nielsen, J. L., Sørensen, Søren Johannes, Larkum, A. W. D., Winther, Jakob R. & Kühl, Michael, 2014, In: Applied and Environmental Microbiology. 80, 10, p. 3244-3249 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse

    Bendtsen, K. M. B., Krych, Lukasz, Sørensen, Dorte Bratbo, Pang, W., Nielsen, Dennis Sandris, Josefsen, K., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Hansen, Axel Kornerup, 2012, In: P L o S One. 7, 10, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations

    Bengtsson, G., Törneman, N., Lipthay, J. R. D. & Sørensen, Søren Johannes, 2013, In: Microbial Ecology. 65, 1, p. 91-100 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure

    Berg, J., Brandt, Kristian Koefoed, Abu Al-Soud, W., Holm, Peter Engelund, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Nybroe, O., 2012, In: Applied and Environmental Microbiology. 78, 20, p. 7438-7446 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    High robustness of soil bacteria and funghi to multifactorial climate change manipulations

    Bergmark, L., Haugwitz-Hardenberg-Reventlow, M. S., Sørensen, Søren Johannes & Priemé, Anders, 2012.

    Research output: Contribution to conference › Conference abstract for conference › Research

  41. Published

    A highly selective quantitative polymerase chain reactionprotocol for Burkholderia and Pseudomonas bacteria tested in soil

    Bergmark, L., Burmølle, Mette, Hansen, Lars Hestbjerg, Abu Al-Soud, W. & Sørensen, Søren Johannes, Aug 2010.

    Research output: Contribution to conference › Poster › Research

  42. Published

    Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing

    Bergmark, L., Poulsen, P. H. B., Abu Al-Soud, W., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: F E M S Microbiology Letters. 333, 1, p. 77-84 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Importance of microbial communities at the root-soil interface for extracellular polymeric substances and soil aggregation in semiarid grasslands

    Bettermann, A., Zethof, J. H. T., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K., Smalla, K. & Vogel, C., 2021, In: Soil Biology & Biochemistry. 159, 14 p., 108301.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Investigation of diversity of plasmids carrying the blaTEM-52 gene

    Bielak, E. M., Bergenholtz, R. D., Jørgensen, M. S., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Hasman, H., 2011, In: Journal of Antimicrobial Chemotherapy. 66, 11, p. 2465-74 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil

    Blau, K., Jacquiod, S., Sørensen, Søren Johannes, Su, J., Zhu, Y., Smalla, K. & Jechalke, S., 2019, In: Frontiers in Microbiology. 10, p. 1-15 725.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Monitoring and evaluating soil quality

    Bloem, J., Schouten, A. J., Sørensen, Søren Johannes, Rutgers, M., van der Werf, A. & Breuer, A. M., 2005, Microbiological methods for assessing soil quality. p. .

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  47. Published

    Sequence of a SCCmec type VII (former VT) found in Danish ST8-t024-PVLneg CA-MRSA

    Boye, K., Pulis, S., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Westh, Henrik T., Apr 2011.

    Research output: Contribution to conference › Poster › Research

  48. Published

    A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors

    Brognaux, A., Han, S., Sørensen, Søren Johannes, Lebeau, F., Thonart, P. & Delvigne, F., 2013, In: Microbial Cell Factories. 12, 100, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Presence of N-acyl Homoserine Lactones in Soil Detected by a Whole-Cell Biosensor and Flow Cytometry

    Burmølle, Mette, Hansen, Lars Hestbjerg, Oregaard, G. & Sørensen, Søren Johannes, 2003, In: Microbial Ecology. 45, 3, p. 226-236 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria.

    Burmølle, Mette, Johnsen, K., Abu Al-Soud, W. M. A. F., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Journal of Microbiological Methods. 79, 2, p. 166-173 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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