Søren Johannes Sørensen
Professor
Microbiology
Universitetsparken 15
2100 København Ø
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Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season
Holmsgaard, P. N., Dealtry, S., Dunon, V., Heuer, H., Hansen, Lars Hestbjerg, Springael, D., Smalla, K., Riber, Leise & Sørensen, Søren Johannes, Oct 2017, In: Environmental Pollution. 229, p. 854-862 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing
Holmsgaard, P. N., Poulsen, P., Hede, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Nov 2010.Research output: Contribution to conference › Poster › Research
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The effect of early probiotic exposure on the preterm infant gut microbiome development
Hui, Y., Smith, Birgitte, Mortensen, M. S., Krych, Lukasz, Sørensen, Søren Johannes, Greisen, Gorm, Krogfelt, K. A. & Nielsen, Dennis Sandris, 2021, In: Gut Microbes. 13, 1, 15 p., 1951113.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium
Iskandar, C. F., Borges, F., Taminiau, B., Daube, G., Zagorec, M., Remenant, B., Leisner, Jørgen, Hansen, M. A., Sørensen, Søren Johannes, Mangavel, C., Cailliez-Grimal, C. & Revol-Junelles, A., 2017, In: Frontiers in Microbiology. 8, 14 p., 357.Research output: Contribution to journal › Journal article › Research › peer-review
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Artificial selection of stable rhizosphere microbiota leads to heritable plant phenotype changes
Jacquiod, S., Spor, A., Wei, S., Munkager, V., Bru, D., Sørensen, Søren Johannes, Salon, C., Philippot, L. & Blouin, M., 2022, In: Ecology Letters. 25, 1, p. 189-201 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.Research output: Contribution to journal › Journal article › Research › peer-review
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Deciphering conjugative plasmid permissiveness in wastewater microbiomes
Jacquiod, S. J. A., Brejnrod, A. D., Milani, S. M., Abu Al-Soud, W., Sørensen, Søren Johannes & Riber, Leise, Jul 2017, In: Molecular Ecology. 26, 13, p. 3556-3571 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomes provide valuable comparative information on soil microeukaryotes
Jacquiod, S. J. A., Stenbæk, J., Santos, S. S., Winding, A., Sørensen, Søren Johannes & Priemé, Anders, 2016, In: Research in Microbiology. 167, 5, p. 436-450 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass
Jakobsen, A. M., Bahl, M. I., Buschhardt, T., Hansen, T. B., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Nesbakken, T. & Aabo, S., 2019, In: International Journal of Food Microbiology. 295, p. 8-18 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment
Jakobsen, L., Sandvang, D., Hansen, Lars Hestbjerg, Bagger-Skjøt, L., Westh, Henrik T., Jørgensen, C., Hansen, D. S., Pedersen, B. M., Monnet, D. L., Frimodt-Møller, N., Sørensen, Søren Johannes & Hammerum, A. M., 2008, In: Environment International. 34, 1, p. 108-15 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J. & 2 others, , 2013, In: P L o S One. 8, 7, 17 p., e68484.Research output: Contribution to journal › Journal article › Research › peer-review
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Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients
Jitwasinkul, T., Suriyaphol, P., Tangphatsornruang, S., Hansen, M. A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Permpikul, C., Rongrungruang, Y. & Tribuddharat, C., 2016, In: Journal of Global Antimicrobial Resistance. 6, p. 57-66 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genome binning of viral entities from bulk metagenomics data
Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.Research output: Contribution to journal › Journal article › Research › peer-review
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Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil.
Johnsen, A. R., de Lipthay, J. R., Sørensen, Søren Johannes, Ekelund, Flemming, Christensen, P., Andersen, O., Karlson, U. & Jacobsen, C. S., 2006, In: Environmental Microbiology. 8, 3, p. 535-45 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Biodegradation, bioaccessibility and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site
Johnson, A. R., Lipthay, J. R. D., Reichenberg, F., Sørensen, Søren Johannes, Andersen, O., Christensen, P., Binderup, M. & Jacobsen, C. S., 2006, In: Environmental Science & Technology (Washington). 40, 10, p. 3293-3298Research output: Contribution to journal › Journal article › Research › peer-review
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Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
Jurburg, S. D., Nunes, I. M., Brejnrod, A. D., Jacquiod, S. J. A., Priemé, Anders, Sørensen, Søren Johannes, Van Elsas, J. D. & Salles, J. F., 2017, In: Frontiers in Microbiology. 8, 13 p., 1832.Research output: Contribution to journal › Journal article › Research › peer-review
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Autogenic succession and deterministic recovery following disturbance in soil bacterial communities
Jurburg, S. D., Nunes, I. M., Stegen, J. C., Le Roux, X., Priemé, Anders, Sørensen, Søren Johannes & Salles, J. F., 6 Apr 2017, In: Scientific Reports. 7, 11 p., 45691.Research output: Contribution to journal › Journal article › Research › peer-review
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Plasmids, viruses, and other circular elements in rat gut
Jørgensen, T. S., Hansen, M. A., Xu, Z., Tabak, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2017, Cold Spring Harbor Laboratory Press, 30 p.Research output: Working paper › Research
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Current strategies for mobilome research
Jørgensen, T. S., Kiil, A. S., Hansen, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2015, In: Frontiers in Microbiology. 5, 6 p., 750.Research output: Contribution to journal › Journal article › Research › peer-review
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Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome
Jørgensen, T. S., Xu, Z., Hansen, M. A., Sørensen, Søren Johannes & Hansen, L. H., 2014, In: P L o S One. 9, 2, 9 p., e87924.Research output: Contribution to journal › Journal article › Research › peer-review
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Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease
Kanfra, X., Liu, B., Beerhues, L., Sørensen, Søren Johannes & Heuer, H., 2018, In: Frontiers in Plant Science. 9, p. 1-13 1666.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production
Kang, D., Shoaie, S., Jacquiod, S., Sørensen, Søren Johannes & Ledesma-Amaro, R., 2021, In: Microorganisms. 9, 5, 15 p., 1042.Research output: Contribution to journal › Journal article › Research › peer-review
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Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity
Kang, D., Herschend, J., Abu Al-Soud, W., Mortensen, M. S., Gonzalo, M., Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2018, In: Bioresource Technology. 270, p. 303-310Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4269
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
Research output: Contribution to journal › Journal article › Research › peer-review
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3030
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Research output: Contribution to conference › Poster › Research
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2838
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Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
Research output: Contribution to journal › Journal article › Research › peer-review
Published