Søren Johannes Sørensen
Professor
Microbiology
Universitetsparken 15
2100 København Ø
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Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
Nielsen, H. B., Almeida, M., Juncker, A., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D. R., Gautier, L., Pedersen, A. G., Le Chatelier, E., Pelletier, E., Bonde, I., Nielsen, T., Manichanh, C., Arumugam, M., Batto, J-M., dos Santos, M. B. Q., Blom, N., Borruel, N., Burgdorf, K. S. & 31 others, , 2014, In: Nature Biotechnology. 32, 8, p. 822–828 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture
Tabacchioni, S., Passato, S., Ambrosino, P., Huang, L., Caldara, M., Cantale, C., Hett, J., Del Fiore, A., Fiore, A., Schlüter, A., Sczyrba, A., Maestri, E., Marmiroli, N., Neuhoff, D., Nesme, J., Sørensen, S. J., Aprea, G., Nobili, C., Presenti, O., Giovannetti, G. & 4 others, , 2021, In: Microorganisms. 9, 2, 23 p., 426.Research output: Contribution to journal › Journal article › Research › peer-review
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Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1
T'Syen, J., Tassoni, R., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Leroy, B., Sekhar, A., Wattiez, R., De Mot, R. & Springael, D., 2015, In: Environmental Science & Technology (Washington). 49, 19, p. 11703-11713 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment
Macdonald, C. A., Crawley, M. J., Wright, D. J., Kuczynski, J., Robinson, L., Knight, R., Abu Al-Soud, W., Sørensen, Søren Johannes, Deng, Y., Zhou, J. & Singh, B. K., 2015, In: Environmental Microbiology. 17, 3, p. 841-854 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Identifying the core microbial community in the gut of fungus-growing termites
Otani, S., Mikaelyan, A., Nobre, T., Hansen, Lars Hestbjerg, Koné, N. A., Sørensen, Søren Johannes, Aanen, D. K., Boomsma, Jacobus J., Brune, A. & Poulsen, Michael, 2014, In: Molecular Ecology. 23, 18, p. 4631–4644 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Impact of Long-Term Organic and Mineral Fertilization on Rhizosphere Metabolites, Root–Microbial Interactions and Plant Health of Lettuce
Windisch, S., Sommermann, L., Babin, D., Chowdhury, S. P., Grosch, R., Moradtalab, N., Walker, F., Höglinger, B., El-Hasan, A., Armbruster, W., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Geistlinger, J., Smalla, K., Rothballer, M., Ludewig, U. & Neumann, G., 2021, In: Frontiers in Microbiology. 11, 26 p., 597745.Research output: Contribution to journal › Journal article › Research › peer-review
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Impact of Tellurite on the Metabolism of Paenibacillus pabuli AL109b With Flagellin Production Explaining High Reduction Capacity
Farias, P., Francisco, R., Maccario, Lorrie, Herschend, J., Piedade, A. P., Sørensen, Søren Johannes & Morais, P. V., 2021, In: Frontiers in Microbiology. 12, 15 p., 718963.Research output: Contribution to journal › Journal article › Research › peer-review
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Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations
Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2007, In: FEMS Microbiology Letters. 266, p. 250-256Research output: Contribution to journal › Journal article › Research › peer-review
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Impact of dna extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis
Lipthay, J. R. D., Enzinger, C., Johnsen, K., Aamand, J. & Sørensen, Søren Johannes, 2004, In: Soil Biology & Biochemistry. 36, p. 1607-1614Research output: Contribution to journal › Journal article › Research › peer-review
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Impact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a post-hoc analysis of a randomized clinical trial
Wei, S., Brejnrod, A. D., Trivedi, Urvish, Mortensen, M. S., Johansen, M. Y., Karstoft, Kristian, Vaag, A. A., Ried-Larsen, M. & Sørensen, Søren Johannes, 2022, In: Gut Microbes. 14, 1, 15 p., 2005407.Research output: Contribution to journal › Journal article › Research › peer-review
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Impact of long-term agricultural management practices on soil prokaryotic communities
Babin, D., Deubel, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Geistlinger, J., Grosch, R. & Smalla, K., 2019, In: Soil Biology & Biochemistry. 129, p. 17-28Research output: Contribution to journal › Journal article › Research › peer-review
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Importance of microbial communities at the root-soil interface for extracellular polymeric substances and soil aggregation in semiarid grasslands
Bettermann, A., Zethof, J. H. T., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K., Smalla, K. & Vogel, C., 2021, In: Soil Biology & Biochemistry. 159, 14 p., 108301.Research output: Contribution to journal › Journal article › Research › peer-review
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Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils
Olagoke, F. K., Bettermann, A., Nguyen, P. T. B., Redmile-Gordon, M., Babin, D., Smalla, K., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K. & Vogel, C., 2022, In: Biology and Fertility of Soils. 58, 4, p. 435-457 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems
Romero, I. A., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes & Romero, E., 2019, In: Science of the Total Environment. 691, p. 749-759 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage
Olesen, Asmus Kalckar, Pinilla Redondo, Rafael, Hansen, Mads Frederik, Russel, J., Dechesne, A., Smets, B. F., Madsen, Jonas Stenløkke, Nesme, Joseph & Sørensen, Søren Johannes, 2022, In: Molecular Ecology. 31, 5, p. 1595-1608Research output: Contribution to journal › Journal article › Research › peer-review
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Inducible Gene Expression by non-culturable bacteria in milk after pasterurization
Gunasekera, T. S., Atfield, A. H., Sørensen, Søren Johannes & Veal, D., 2002, In: Applied and Environmental Microbiology. 68(4), p. 1988-1994Research output: Contribution to journal › Journal article › Research › peer-review
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Infant airway microbiota and topical immune perturbations in the origins of childhood asthma
Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J., Mortensen, M., Brejnrod, A., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2019, In: Nature Communications. 10, 8 p., 5001.Research output: Contribution to journal › Journal article › Research › peer-review
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Influence of fungal-bacterial interactions on bacterial conjugation in the residuesphere
Sengeløv, G., Kowalchuk, G. A. & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Ecology. 31, p. 39-45Research output: Contribution to journal › Journal article › Research › peer-review
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Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes
Major, N., Jechalke, S., Nesme, Joseph, Goreta Ban, S., Černe, M., Sørensen, Søren Johannes, Ban, D., Grosch, R., Schikora, A. & Schierstaedt, J., 2022, In: Waste Management. 154, p. 126-135 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential
Procópio, L., Alvarez, V. M., Jurelevicius, D. A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Cardoso, J. S., Pádula, M., Leitao, Á. C., Seldin, L. & van Elsas, J. D., 2012, In: Antonie van Leeuwenhoek: Journal of Microbiology. 101, 2, p. 289-302 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
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Interactions in multispecies biofilms: do they actually matter?
Burmølle, Mette, Ren, D., Bjarnsholt, Thomas & Sørensen, Søren Johannes, 2014, In: Trends in Microbiology. 22, 2, p. 84-91 8 p.Research output: Contribution to journal › Review › Research › peer-review
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Interspecies interactions reduce selection for a biofilm-optimized variant in a four-species biofilm model
Røder, Henriette Lyng, Liu, W., Sørensen, Søren Johannes, Madsen, Jonas Stenløkke & Burmølle, Mette, 2019, In: Environmental Microbiology Reports. 11, 6, p. 835-839 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment
Røder, Henriette Lyng, Raghupathi, P. K., Herschend, J., Brejnrod, A. D., Knoechel, Susanne, Sørensen, Søren Johannes & Burmølle, Mette, 2015, In: Food Microbiology. 51, p. 18-24 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization
Liu, W., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Bjarnsholt, Thomas, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Frontiers in Microbiology. 7, 8 p., 1366.Research output: Contribution to journal › Review › Research › peer-review
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Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth
Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Interspecific interactions in dual-species biofilms of soil bacteria: effects of fertilization practices
Sun, X., Cai, P., Sørensen, Søren Johannes, Mortimer, M., Gao, C., Huang, Q., Wang, Y., Lin, X., Wu, Y., Zhu, D. & Chen, R., 2020, In: Journal of Soils and Sediments. 20, 3, p. 1494-1501 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam
Nguyen, T. P. O., Hansen, M. A., Hansen, Lars Hestbjerg, Horemans, B., Sørensen, Søren Johannes, De Mot, R. & Springael, D., 2019, In: FEMS Microbiology Ecology. 95, 1, p. 1-11 fiy214.Research output: Contribution to journal › Journal article › Research › peer-review
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Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques
Li, L., Abu Al-Soud, W., Bergmark, L., Riber, Leise, Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2013, In: Current Microbiology. 67, 4, p. 423-430 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Investigation of diversity of plasmids carrying the blaTEM-52 gene
Bielak, E. M., Bergenholtz, R. D., Jørgensen, M. S., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Hasman, H., 2011, In: Journal of Antimicrobial Chemotherapy. 66, 11, p. 2465-74 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Investigation of prokaryotic diversity in an urban waste field trial by high throughput sequencing
Poulsen, P. H. B., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2009. 1 p.Research output: Contribution to conference › Poster › Research
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Investigation of prokaryotic diversity in an urban waste field trial by high throughput sequencing
Poulsen, P. H. B., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
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Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
Muhammed, Musemma Kedir, Olsen, M. L., Kot, Witold, Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny
Mahony, J., Kot, Witold, Murphy, J., Ainsworth, S., Neve, H., Hansen, Lars Hestbjerg, Heller, K. J., Sørensen, Søren Johannes, Hammer, K., Cambillau, C., Vogensen, Finn Kvist & Sinderen, D. V., 2013, In: Applied and Environmental Microbiology. 79, 14, p. 4385-4392 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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It is elemental: soil nutrient stoichiometry drives bacterial diversity
Delgado-Baquerizo, M., Reich, P. B., Khachane, A. N., Campbell, C. D., Thomas, N., Freitag, T. E., Abu Al-Soud, W., Sørensen, Søren Johannes, Bardgett, R. D. & Singh, B. K., 2017, In: Environmental Microbiology. 19, 3, p. 1176-1188 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis
Stefanic, P., Belcijan, K., Kraigher, B., Kostanjšek, R., Nesme, Joseph, Madsen, Jonas Stenløkke, Kovac, J., Sørensen, Søren Johannes, Vos, M. & Mandic-Mulec, I., 2021, In: Nature Communications. 12, 11 p., 3457.Research output: Contribution to journal › Journal article › Research › peer-review
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Large-scale association analyses identify host factors influencing human gut microbiome composition
Kurilshikov, A., Medina-Gomez, C., Bacigalupe, R., Radjabzadeh, D., Wang, J., Demirkan, A., Le Roy, C. I., Raygoza Garay, J. A., Finnicum, C. T., Liu, X., Zhernakova, D. V., Bonder, M. J., Hansen, T. H., Frost, F., Rühlemann, M. C., Turpin, W., Moon, J. Y., Kim, H. N., Lüll, K., Barkan, E. & 84 others, , 2021, In: Nature Genetics. 53, p. 156-165 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
Thorsen, Jonathan Jan Ilve, Brejnrod, A. D., Mortensen, M. S., Rasmussen, Morten Arendt, Stokholm, Jakob, Abu Al-Soud, W., Sørensen, Søren Johannes, Bisgaard, H. & Waage, J. E., 2016, In: Microbiome. 4, 14 p., 62.Research output: Contribution to journal › Journal article › Research › peer-review
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Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community
Cyriaque, V., Madsen, Jonas Stenløkke, Fievez, L., Leroy, B., Hansen, Lars Hestbjerg, Bureau, F., Sørensen, Søren Johannes & Wattiez, R., 2021, In: Frontiers in Microbiology. 12, 14 p., 655903.Research output: Contribution to journal › Journal article › Research › peer-review
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Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
Jurburg, S. D., Nunes, I. M., Brejnrod, A. D., Jacquiod, S. J. A., Priemé, Anders, Sørensen, Søren Johannes, Van Elsas, J. D. & Salles, J. F., 2017, In: Frontiers in Microbiology. 8, 13 p., 1832.Research output: Contribution to journal › Journal article › Research › peer-review
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Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability
Riber, Leise, Charbon, G., Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2011.Research output: Contribution to conference › Poster › Research › peer-review
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Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater
Dunon, V., Holmsgaard, P. N., Dealtry, S., Lavigne, R., Sørensen, Søren Johannes, Smalla, K., Top, E. M. & Springael, D., 2022, In: Applied and Environmental Microbiology. 88, 3, 17 p., e01648-21.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce
Sommermann, L., Babin, D., Behr, J. H., Chowdhury, S. P., Sandmann, M., Windisch, S., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2022, In: Microorganisms. 10, 9, 27 p., 1717.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere
Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.Research output: Contribution to journal › Journal article › Research › peer-review
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Loss of microbial diversity in soils is coincident with reductions in some specialized functions
Singh, B. K., Quince, C., Macdonald, C. A., Khachane, A., Thomas, N., Abu Al-Soud, W., Sørensen, Søren Johannes, He, Z., White, D., Sinclair, A., Crooks, B., Zhou, J. & Campbell, C. D., 2014, In: Environmental Microbiology. 16, 8, p. 2408-2420 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Low-abundant species facilitates specific spatial organization that promotes multispecies biofilm formation
Liu, W., Russel, J., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: Environmental Microbiology. 19, 7, p. 2893-2905 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere
Pathan, S. I., Ceccherini, M. T., Hansen, M. A., Giagnoni, L., Ascher, J., Arenella, M., Sørensen, Søren Johannes, Pietramellara, G., Nannipieri, P. & Renella, G., 2015, In: Biology and Fertility of Soils. 51, 8, p. 995-1004 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Making bio-sense of toxicity: new developments in whole-cell biosencors
Sørensen, Søren Johannes, Burmølle, Mette & Hansen, Lars Hestbjerg, 2006, In: Current Opinion in Biotechnology. 17, 1, p. 11-16Research output: Contribution to journal › Journal article › Research › peer-review
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Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil
Blau, K., Jacquiod, S., Sørensen, Søren Johannes, Su, J., Zhu, Y., Smalla, K. & Jechalke, S., 2019, In: Frontiers in Microbiology. 10, p. 1-15 725.Research output: Contribution to journal › Journal article › Research › peer-review
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Maturation of the gut microbiome and risk of asthma in childhood
Stokholm, Jakob, Blaser, M. J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J. E., Vinding, R. K., Schoos, A. M., Kunøe, A., Fink, N. R., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brejnrod, A. D., Mortensen, M. S., Abu Al-Soud, W., Sørensen, Søren Johannes & Bisgaard, H., 2018, In: Nature Communications. 9, 10 p., 141.Research output: Contribution to journal › Journal article › Research › peer-review
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Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine
Møller, A. K., Barkay, T., Hansen, M. A., Norman, A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Boyd, E. S. & Kroer, Niels, 2014, In: FEMS Microbiology Ecology. 87, 1, p. 52-63 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in Paenibacillus amylolyticus in Response to Xanthomonas retroflexus
Herschend, J., Ernst, M., Koren, K., Melnik, A. V., da Silva, R. R., Røder, Henriette Lyng, Damholt, Z. B. V., Hägglund, Per Mårten, Svensson, B., Sørensen, Søren Johannes, Kühl, Michael, Dorrestein, P. C. & Burmølle, Mette, 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 17 p., 805473.Research output: Contribution to journal › Journal article › Research › peer-review
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Metabolic variability in bioprocessing: implications of microbial phenotypic heterogeneity
Delvigne, F., Zune, Q., Lara, A. R., Abu Al-Soud, W. & Sørensen, Søren Johannes, 2014, In: Trends in Biotechnology. 32, 12, p. 608-616 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomes provide valuable comparative information on soil microeukaryotes
Jacquiod, S. J. A., Stenbæk, J., Santos, S. S., Winding, A., Sørensen, Søren Johannes & Priemé, Anders, 2016, In: Research in Microbiology. 167, 5, p. 436-450 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms
Kang, D., Huang, Y., Nesme, Joseph, Herschend, J., Jacquiod, S., Kot, Witold, Hansen, Lars Hestbjerg, Lange, L. & Sørensen, Søren Johannes, 2021, In: Science of the Total Environment. 761, 9 p., 143281.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic analysis of dairy bacteriophages: extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures
Muhammed, Musemma Kedir, Kot, Witold, Neve, H., Mahony, J., Castro Mejia, J. L., Krych, Lukasz, Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J., van Sinderen, D. & Vogensen, Finn Kvist, 2017, In: Applied and Environmental Microbiology. 83, 19, 15 p., e00888-17.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs
Li, Xuan Ji, Rensing, C., Vestergaard, G., Arumugam, Mani, Nesme, Joseph, Gupta, S., Brejnrod, A. D. & Sørensen, Søren Johannes, 2022, In: Environment International. 158, 10 p., 106899.Research output: Contribution to journal › Journal article › Research › peer-review
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Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner
Klümper, U., Dechesne, A., Riber, Leise, Brandt, Kristian Koefoed, Gülay, A., Sørensen, Søren Johannes & Smets, B. F., 2017, In: The ISME Journal. 11, 1, p. 152-165 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metal-induced bacterial interactions promote diversity in river-sediment microbiomes
Cyriaque, V., Géron, A., Billon, G., Nesme, Joseph, Werner, J., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: F E M S Microbiology Ecology. 96, 6, 12 p., fiaa076.Research output: Contribution to journal › Journal article › Research › peer-review
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Metamobilomics - Expanding the environmental mobilome with high throughput sequencing
Norman, A., Li, L., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Aug 2010.Research output: Contribution to conference › Poster › Research
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Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing
Li, L., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: Clinical Microbiology and Infection. 18, Suppl. 4, p. 8-11 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts
Duan, Y. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Elsgaard, L., Petersen, S. O. & Boon, N., 2014, In: Journal of Applied Microbiology. 117, 4, p. 1066-1078 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methods for detection of conjugative plasmid transfer in aquatic environments
Sengeløv, G. & Sørensen, Søren Johannes, 1998, In: Current Microbiology. 37, p. 274-280Research output: Contribution to journal › Journal article › Research
- Published
Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm
Liu, W., Russel, J., Burmølle, Mette, Sørensen, Søren Johannes & Madsen, Jonas Stenløkke, 2018, In: I S M E Journal. 12, p. 1940-1951 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial community analysis of soils under different soybean cropping regimes in the Argentinean south-eastern Humid Pampas
Fernandez-Gnecco, G., Smalla, K., Maccario, Lorrie, Sørensen, Søren Johannes, Barbieri, P., Consolo, V. F., Covacevich, F. & Babin, D., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab007.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil.
Johnsen, A. R., de Lipthay, J. R., Sørensen, Søren Johannes, Ekelund, Flemming, Christensen, P., Andersen, O., Karlson, U. & Jacobsen, C. S., 2006, In: Environmental Microbiology. 8, 3, p. 535-45 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations
Bengtsson, G., Törneman, N., Lipthay, J. R. D. & Sørensen, Søren Johannes, 2013, In: Microbial Ecology. 65, 1, p. 91-100 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques
Ryssel, M., Johansen, P., Abu Al-Soud, W., Sørensen, Søren Johannes, Arneborg, Nils & Jespersen, Lene, 2015, In: International Journal of Food Microbiology. 215, p. 124-30 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities
Raghupathi, P. K., Zupančič, J., Brejnrod, A. D., Jacquiod, S. J. A., Houf, K., Burmølle, Mette, Gunde-Cimerman, N. & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 5, 17 p., e02755-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity in a permanently cold and alkaline environment in Greenland
Glaring, M. A., Vester, J. K., Lylloff, J. E., Abu Al-Soud, W., Sørensen, Søren Johannes & Stougaard, P., 2015, In: PLoS ONE. 10, 4, 22 p., e0124863.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella
Behrendt, L., Larkum, A. W. D., Trampe, Erik, Norman, A., Sørensen, Søren Johannes & Kühl, Michael, 2012, In: I S M E Journal. 6, p. 1222-1237 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial indicators for soil quality
Schloter, M., Nannipieri, P., Sørensen, Søren Johannes & van Elsas, J. D., Jan 2018, In: Biology and Fertility of Soils. 54, 1, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbiomes associated with infective stages of root-knot and lesion nematodes in soil
Elhadyl, A., Giné, A., Topalovic, O., Jacquiod, S. J. A., Sørensen, Søren Johannes, Javier Sorribas, F. & Heuer, H., 4 May 2017, In: PLoS ONE. 12, 5, 17 p., e0177145.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mineralisation of 2,6-dichlorobenzamide (BAM) in dichlobenil-exposed soils and isolation of a BAM-mineralising Aminobacter sp.
Simonsen, A., Holtze, M. S., Sørensen, S. R., Sørensen, Søren Johannes & Aamund, J., 2006, In: Environmental Pollution. 144, 1, p. 289-295Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics
Cretoiu, M. S., Kielak, A. M., Abu Al-Soud, W., Sørensen, Søren Johannes & van Elsas, J. D., 2012, In: Applied Microbiology and Biotechnology. 94, 5, p. 1347-1358 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mobilization of non-conjugative plasmids, pBR322-derivatives from laboratory strains of escherichia coli to indigenous bacteria isolated from seawater
Sørensen, Søren Johannes, 1992, In: Microbial Releases. 1, p. 17-22Research output: Contribution to journal › Journal article › Research
- Published
Modeling transfer of vaginal microbiota from mother to infant in early life
Mortensen, M. S., Rasmussen, Morten Arendt, Stokholm, Jakob, Brejnrod, A. D., Balle, C., Thorsen, J., Krogfelt, K. A., Bisgaard, H. & Sørensen, Søren Johannes, 2021, In: eLife. 10, 19 p., e57051.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular methods for assessing and manipulating the diversity of microbial populations and processes
Sørensen, Søren Johannes, de Lipthay, J. R., Müller, A. K., Barkay, T., Hansen, Lars Hestbjerg & Rasmussen, L. D., 2002, Enzymes in the Environment: Activity, Ecology, and Applications. Burns, R. G. & Dick, R. P. (eds.). Marcel Dekker, 363 p. (Books in soils, plants, and the environment).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Monitoring and evaluating soil quality
Bloem, J., Schouten, A. J., Sørensen, Søren Johannes, Rutgers, M., van der Werf, A. & Breuer, A. M., 2005, Microbiological methods for assessing soil quality. p. .Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research
- Published
Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives
Pinilla Redondo, Rafael, Cyriaque, V., Jacquiod, S., Sørensen, Søren Johannes & Riber, Leise, 2018, In: Plasmid. 99, p. 56-67Research output: Contribution to journal › Review › Research › peer-review
- Published
Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies logs
Rinta-Kanto, J. M., Sinkko, H., Rajala, T., Abu Al-Soud, W., Sørensen, Søren Johannes, Tamminen, M. V. & Timonen, S., 2016, In: F E M S Microbiology Ecology. 92, 7, 10 p., fiw087.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Natural hot spots for gain of multiple resistances: arsenic and antibiotic resistances in heterotrophic, aerobic bacteria from marine hydrothermal vent fields
Farias, P., Santo, C. E., Branco, R., Francisco, R., Santos, S., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Morais, P. V., 2015, In: Applied and Environmental Microbiology. 81, 7, p. 2534-2543 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Neonatal metabolome of caesarean section and risk of childhood asthma
Gürdeniz, G., Ernst, M., Rago, D., Kim, M., Courraud, J., Stokholm, Jakob, Bønnelykke, Klaus, Björkbom, A., Trivedi, Urvish, Sørensen, Søren Johannes, Brix, Susanne, Hougaard, D., Rasmussen, Morten Arendt, Cohen, A. S., Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2022, In: The European Respiratory Journal. 59, 6, 11 p., 2102406.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
New ecological niches and habitats for Chlorophyll d- containing cyanobacteria
Behrendt, L., Chen, M., Larkum, A. W. D., Ralph, P. J., Sørensen, Søren Johannes, Trampe, E. & Kühl, Michael, 2010.Research output: Contribution to conference › Poster › Research
- Published
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
Farnelid, H., Andersson, A. F., Bertilsson, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Steward, G. F., Hagström, Å. & Riemann, Lasse, 2011, In: P L o S One. 6, 4, p. e19223 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel and conserved bacterial mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine
Kroer, Niels, Møller, A., Barkay, T., Hansen, M. A., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012.Research output: Contribution to conference › Poster › Research
- Published
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux
Norman, A., Hansen, Lars Hestbjerg, She, Q. & Sørensen, Søren Johannes, 2008, In: Plasmid. 60, 1, p. 59-74 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nutrient Fortification of Human Donor Milk Affects Intestinal Function and Protein Metabolism in Preterm Pigs
Sun, Jing, Li, Y., Nguyen, Duc Ninh, Mortensen, M. S., van den Akker, C. H. P., Skeath, T., Pors, S. E., Pankratova, Stanislava, Rudloff, S., Sørensen, Søren Johannes, Burrin, D. G., Thymann, Thomas & Sangild, Per Torp, 2018, In: Journal of Nutrition. 148, 3, p. 336-347 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk
U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Permissiveness of soil microbial communities toward receipt of mobile genetic elements
Musovic, S., Klümper, U., Neves Lundin, A. L., Sørensen, Søren Johannes & Smets, B. F., 2012.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Persistence Mechanisms of Conjugative Plasmids
Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, Horizontal Gene Transfer: Genomes in Flux. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 73-102 (Methods in Molecular Biology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Persistence and progression of staphylococcal infection in the presence of public goods
Trivedi, Urvish, Fell, C., Madsen, Jonas Stenløkke, Everett, J., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 2020, In: npj Biofilms and Microbiomes. 6, 5 p., 55.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pharmacokinetics of Locally Applied Antibiotic Prophylaxis for Implant-Based Breast Reconstruction
Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Norlin, C. B., Ørholt, M., Larsen, A., Bue, M., Lichtenberg, Mads, Hertz, Frederik Boëtius, Damsgaard, T. E., Vester-Glowinski, Peter Viktor, Sørensen, Søren Johannes, Bjarnsholt, Thomas & Herly, Mikkel, 2023, In: JAMA network open. 6, 12, 11 p., E2348414.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law
Baert, J., Kinet, R., Brognaux, A., Delepierre, A., Telek, S., Sørensen, Søren Johannes, Riber, Leise, Fickers, P. & Delvigne, F., 2015, In: Biotechnology Journal. 10, 8, p. 1316-1325 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physiological heterogeneities in microbial populations and implications for physical stress tolerance
Carlqvist, M., Lencastre Fernandes, R., Helmark, S., Heins, A., Neves Lundin, A. L., Sørensen, Søren Johannes, Gernaey, K. & Eliasson Lantz, A., 2012, In: Microbial Cell Factories. 11, 94, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmid Encoded Multidrug Efflux Pump Conferring Resistance to Olaquindox in Escherichia coli
Hansen, Lars Hestbjerg, Johannesen, E., Burmølle, Mette, Sørensen, A. H. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 9, p. 3332-3337Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients
Jitwasinkul, T., Suriyaphol, P., Tangphatsornruang, S., Hansen, M. A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Permpikul, C., Rongrungruang, Y. & Tribuddharat, C., 2016, In: Journal of Global Antimicrobial Resistance. 6, p. 57-66 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
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