Biopython: freely available Python tools for computational molecular biology and bioinformatics

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Biopython: freely available Python tools for computational molecular biology and bioinformatics. / Cock, Peter J A; Antao, Tiago; Chang, Jeffrey T; Chapman, Brad A; Cox, Cymon J; Dalke, Andrew; Friedberg, Iddo; Hamelryck, Thomas; Kauff, Frank; Wilczynski, Bartek; de Hoon, Michiel J L.

In: Bioinformatics, Vol. 25, No. 11, 2009, p. 1422-3.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Cock, PJA, Antao, T, Chang, JT, Chapman, BA, Cox, CJ, Dalke, A, Friedberg, I, Hamelryck, T, Kauff, F, Wilczynski, B & de Hoon, MJL 2009, 'Biopython: freely available Python tools for computational molecular biology and bioinformatics', Bioinformatics, vol. 25, no. 11, pp. 1422-3. https://doi.org/10.1093/bioinformatics/btp163

APA

Cock, P. J. A., Antao, T., Chang, J. T., Chapman, B. A., Cox, C. J., Dalke, A., Friedberg, I., Hamelryck, T., Kauff, F., Wilczynski, B., & de Hoon, M. J. L. (2009). Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics, 25(11), 1422-3. https://doi.org/10.1093/bioinformatics/btp163

Vancouver

Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 2009;25(11):1422-3. https://doi.org/10.1093/bioinformatics/btp163

Author

Cock, Peter J A ; Antao, Tiago ; Chang, Jeffrey T ; Chapman, Brad A ; Cox, Cymon J ; Dalke, Andrew ; Friedberg, Iddo ; Hamelryck, Thomas ; Kauff, Frank ; Wilczynski, Bartek ; de Hoon, Michiel J L. / Biopython: freely available Python tools for computational molecular biology and bioinformatics. In: Bioinformatics. 2009 ; Vol. 25, No. 11. pp. 1422-3.

Bibtex

@article{1b0b3bc0276711df8ed1000ea68e967b,
title = "Biopython: freely available Python tools for computational molecular biology and bioinformatics",
abstract = "SUMMARY: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence file formats and multiple sequence alignments, dealing with 3D macro molecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning. AVAILABILITY: Biopython is freely available, with documentation and source code at (www.biopython.org) under the Biopython license.",
author = "Cock, {Peter J A} and Tiago Antao and Chang, {Jeffrey T} and Chapman, {Brad A} and Cox, {Cymon J} and Andrew Dalke and Iddo Friedberg and Thomas Hamelryck and Frank Kauff and Bartek Wilczynski and {de Hoon}, {Michiel J L}",
note = "Keywords: Computational Biology; Databases, Factual; Internet; Programming Languages; Software",
year = "2009",
doi = "10.1093/bioinformatics/btp163",
language = "English",
volume = "25",
pages = "1422--3",
journal = "Computer Applications in the Biosciences",
issn = "1471-2105",
publisher = "Oxford University Press",
number = "11",

}

RIS

TY - JOUR

T1 - Biopython: freely available Python tools for computational molecular biology and bioinformatics

AU - Cock, Peter J A

AU - Antao, Tiago

AU - Chang, Jeffrey T

AU - Chapman, Brad A

AU - Cox, Cymon J

AU - Dalke, Andrew

AU - Friedberg, Iddo

AU - Hamelryck, Thomas

AU - Kauff, Frank

AU - Wilczynski, Bartek

AU - de Hoon, Michiel J L

N1 - Keywords: Computational Biology; Databases, Factual; Internet; Programming Languages; Software

PY - 2009

Y1 - 2009

N2 - SUMMARY: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence file formats and multiple sequence alignments, dealing with 3D macro molecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning. AVAILABILITY: Biopython is freely available, with documentation and source code at (www.biopython.org) under the Biopython license.

AB - SUMMARY: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence file formats and multiple sequence alignments, dealing with 3D macro molecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning. AVAILABILITY: Biopython is freely available, with documentation and source code at (www.biopython.org) under the Biopython license.

U2 - 10.1093/bioinformatics/btp163

DO - 10.1093/bioinformatics/btp163

M3 - Journal article

C2 - 19304878

VL - 25

SP - 1422

EP - 1423

JO - Computer Applications in the Biosciences

JF - Computer Applications in the Biosciences

SN - 1471-2105

IS - 11

ER -

ID: 18364041