Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites. / Palmer, Marike; de Maayer, Pieter; Thomas-Poulsen, Michael; Steenkamp, Emma T; van Zyl, Elritha; Coutinho, Teresa A; Venter, Stephanus N.

In: Standards in Genomic Sciences, Vol. 11, 23, 2016.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Palmer, M, de Maayer, P, Thomas-Poulsen, M, Steenkamp, ET, van Zyl, E, Coutinho, TA & Venter, SN 2016, 'Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites', Standards in Genomic Sciences, vol. 11, 23. https://doi.org/10.1186/s40793-016-0144-z

APA

Palmer, M., de Maayer, P., Thomas-Poulsen, M., Steenkamp, E. T., van Zyl, E., Coutinho, T. A., & Venter, S. N. (2016). Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites. Standards in Genomic Sciences, 11, [23]. https://doi.org/10.1186/s40793-016-0144-z

Vancouver

Palmer M, de Maayer P, Thomas-Poulsen M, Steenkamp ET, van Zyl E, Coutinho TA et al. Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites. Standards in Genomic Sciences. 2016;11. 23. https://doi.org/10.1186/s40793-016-0144-z

Author

Palmer, Marike ; de Maayer, Pieter ; Thomas-Poulsen, Michael ; Steenkamp, Emma T ; van Zyl, Elritha ; Coutinho, Teresa A ; Venter, Stephanus N. / Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites. In: Standards in Genomic Sciences. 2016 ; Vol. 11.

Bibtex

@article{992e83b837fb4d5daa357d616efa72d6,
title = "Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites",
abstract = "The genus Pantoea incorporates many economically and clinically important species. The plant-associated species, Pantoea agglomerans and Pantoea vagans, are closely related and are often isolated from similar environments. Plasmids conferring certain metabolic capabilities are also shared amongst these two species. The genomes of two isolates obtained from fungus-growing termites in South Africa were sequenced, assembled and annotated. A high number of orthologous genes are conserved within and between these species. The difference in genome size between P. agglomerans MP2 (4,733,829 bp) and P. vagans MP7 (4,598,703 bp) can largely be attributed to the differences in plasmid content. The genome sequences of these isolates may shed light on the common traits that enable P. agglomerans and P. vagans to co-occur in plant- and insect-associated niches.",
author = "Marike Palmer and {de Maayer}, Pieter and Michael Thomas-Poulsen and Steenkamp, {Emma T} and {van Zyl}, Elritha and Coutinho, {Teresa A} and Venter, {Stephanus N}",
year = "2016",
doi = "10.1186/s40793-016-0144-z",
language = "English",
volume = "11",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",

}

RIS

TY - JOUR

T1 - Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites

AU - Palmer, Marike

AU - de Maayer, Pieter

AU - Thomas-Poulsen, Michael

AU - Steenkamp, Emma T

AU - van Zyl, Elritha

AU - Coutinho, Teresa A

AU - Venter, Stephanus N

PY - 2016

Y1 - 2016

N2 - The genus Pantoea incorporates many economically and clinically important species. The plant-associated species, Pantoea agglomerans and Pantoea vagans, are closely related and are often isolated from similar environments. Plasmids conferring certain metabolic capabilities are also shared amongst these two species. The genomes of two isolates obtained from fungus-growing termites in South Africa were sequenced, assembled and annotated. A high number of orthologous genes are conserved within and between these species. The difference in genome size between P. agglomerans MP2 (4,733,829 bp) and P. vagans MP7 (4,598,703 bp) can largely be attributed to the differences in plasmid content. The genome sequences of these isolates may shed light on the common traits that enable P. agglomerans and P. vagans to co-occur in plant- and insect-associated niches.

AB - The genus Pantoea incorporates many economically and clinically important species. The plant-associated species, Pantoea agglomerans and Pantoea vagans, are closely related and are often isolated from similar environments. Plasmids conferring certain metabolic capabilities are also shared amongst these two species. The genomes of two isolates obtained from fungus-growing termites in South Africa were sequenced, assembled and annotated. A high number of orthologous genes are conserved within and between these species. The difference in genome size between P. agglomerans MP2 (4,733,829 bp) and P. vagans MP7 (4,598,703 bp) can largely be attributed to the differences in plasmid content. The genome sequences of these isolates may shed light on the common traits that enable P. agglomerans and P. vagans to co-occur in plant- and insect-associated niches.

U2 - 10.1186/s40793-016-0144-z

DO - 10.1186/s40793-016-0144-z

M3 - Journal article

C2 - 26937267

VL - 11

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

M1 - 23

ER -

ID: 162682161