Interaction networks in protein folding via atomic-resolution experiments and long-time-scale molecular dynamics simulations

Research output: Contribution to journalJournal articleResearchpeer-review

  • Lorenzo Sborgi
  • Abhinav Verma
  • Stefano Piana
  • Lindorff-Larsen, Kresten
  • Michele Cerminara
  • Clara M. Santiveri
  • David E. Shaw
  • Eva De Alba
  • Victor Muñoz

The integration of atomic-resolution experimental and computational methods offers the potential for elucidating key aspects of protein folding that are not revealed by either approach alone. Here, we combine equilibrium NMR measurements of thermal unfolding and long molecular dynamics simulations to investigate the folding of gpW, a protein with two-state-like, fast folding dynamics and cooperative equilibrium unfolding behavior. Experiments and simulations expose a remarkably complex pattern of structural changes that occur at the atomic level and from which the detailed network of residue-residue couplings associated with cooperative folding emerges. Such thermodynamic residue-residue couplings appear to be linked to the order of mechanistically significant events that take place during the folding process. Our results on gpW indicate that the methods employed in this study are likely to prove broadly applicable to the fine analysis of folding mechanisms in fast folding proteins. (Figure Presented).

Original languageEnglish
JournalJournal of the American Chemical Society
Volume137
Issue number20
Pages (from-to)6506-6516
Number of pages11
ISSN0002-7863
DOIs
Publication statusPublished - 2015
Externally publishedYes

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