JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.

Research output: Contribution to journalJournal articlepeer-review

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JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. / Bryne, Jan Christian; Valen, Eivind; Tang, Man-Hung Eric; Marstrand, Troels; Winther, Ole; da Piedade, Isabelle; Krogh, Anders; Lenhard, Boris; Sandelin, Albin.

In: Nucleic Acids Research, Vol. 36, No. Database issue, 2008, p. D102-6.

Research output: Contribution to journalJournal articlepeer-review

Harvard

Bryne, JC, Valen, E, Tang, M-HE, Marstrand, T, Winther, O, da Piedade, I, Krogh, A, Lenhard, B & Sandelin, A 2008, 'JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.', Nucleic Acids Research, vol. 36, no. Database issue, pp. D102-6. https://doi.org/10.1093/nar/gkm955

APA

Bryne, J. C., Valen, E., Tang, M-H. E., Marstrand, T., Winther, O., da Piedade, I., Krogh, A., Lenhard, B., & Sandelin, A. (2008). JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Research, 36(Database issue), D102-6. https://doi.org/10.1093/nar/gkm955

Vancouver

Bryne JC, Valen E, Tang M-HE, Marstrand T, Winther O, da Piedade I et al. JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Research. 2008;36(Database issue):D102-6. https://doi.org/10.1093/nar/gkm955

Author

Bryne, Jan Christian ; Valen, Eivind ; Tang, Man-Hung Eric ; Marstrand, Troels ; Winther, Ole ; da Piedade, Isabelle ; Krogh, Anders ; Lenhard, Boris ; Sandelin, Albin. / JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. In: Nucleic Acids Research. 2008 ; Vol. 36, No. Database issue. pp. D102-6.

Bibtex

@article{eeaea370990d11dd86a6000ea68e967b,
title = "JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.",
abstract = "JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.",
author = "Bryne, {Jan Christian} and Eivind Valen and Tang, {Man-Hung Eric} and Troels Marstrand and Ole Winther and {da Piedade}, Isabelle and Anders Krogh and Boris Lenhard and Albin Sandelin",
note = "Keywords: Access to Information; Animals; Binding Sites; Computational Biology; Data Interpretation, Statistical; Databases, Nucleic Acid; Humans; Internet; Models, Genetic; Promoter Regions (Genetics); RNA Splice Sites; Regulatory Elements, Transcriptional; Software; Transcription Factors; User-Computer Interface",
year = "2008",
doi = "10.1093/nar/gkm955",
language = "English",
volume = "36",
pages = "D102--6",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "Database issue",

}

RIS

TY - JOUR

T1 - JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.

AU - Bryne, Jan Christian

AU - Valen, Eivind

AU - Tang, Man-Hung Eric

AU - Marstrand, Troels

AU - Winther, Ole

AU - da Piedade, Isabelle

AU - Krogh, Anders

AU - Lenhard, Boris

AU - Sandelin, Albin

N1 - Keywords: Access to Information; Animals; Binding Sites; Computational Biology; Data Interpretation, Statistical; Databases, Nucleic Acid; Humans; Internet; Models, Genetic; Promoter Regions (Genetics); RNA Splice Sites; Regulatory Elements, Transcriptional; Software; Transcription Factors; User-Computer Interface

PY - 2008

Y1 - 2008

N2 - JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.

AB - JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.

U2 - 10.1093/nar/gkm955

DO - 10.1093/nar/gkm955

M3 - Journal article

C2 - 18006571

VL - 36

SP - D102-6

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - Database issue

ER -

ID: 6566380