SOAP: short oligonucleotide alignment program
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SOAP : short oligonucleotide alignment program. / Li, Ruiqiang; Li, Yingrui; Kristiansen, Karsten; Wang, Jun.
In: Bioinformatics, Vol. 24, No. 5, 2008, p. 713-714.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - SOAP
T2 - short oligonucleotide alignment program
AU - Li, Ruiqiang
AU - Li, Yingrui
AU - Kristiansen, Karsten
AU - Wang, Jun
PY - 2008
Y1 - 2008
N2 - MOTIVATION: We have developed a program SOAP for efficient gapped and ungapped alignment of short oligonucleotides onto reference sequences. The program is designed to handle the huge amounts of short reads generated by parallel sequencing using the new generation Illumina-Solexa sequencing technology. SOAP is compatible with numerous applications, including single-read or pair-end resequencing, small RNA discovery, and mRNA tag sequence mapping. SOAP is a command-driven program, which supports multithreaded parallel computing, and has a batch module for multiple query sets. AVAILABILITY: http://soap.genomics.org.cn CONTACT: soap@genomics.org.cn.
AB - MOTIVATION: We have developed a program SOAP for efficient gapped and ungapped alignment of short oligonucleotides onto reference sequences. The program is designed to handle the huge amounts of short reads generated by parallel sequencing using the new generation Illumina-Solexa sequencing technology. SOAP is compatible with numerous applications, including single-read or pair-end resequencing, small RNA discovery, and mRNA tag sequence mapping. SOAP is a command-driven program, which supports multithreaded parallel computing, and has a batch module for multiple query sets. AVAILABILITY: http://soap.genomics.org.cn CONTACT: soap@genomics.org.cn.
U2 - 10.1093/bioinformatics/btn025
DO - 10.1093/bioinformatics/btn025
M3 - Journal article
C2 - 18227114
VL - 24
SP - 713
EP - 714
JO - Computer Applications in the Biosciences
JF - Computer Applications in the Biosciences
SN - 1471-2105
IS - 5
ER -
ID: 10242692