Jeppe Vinther

Jeppe Vinther

Associate Professor

ORCID: 0000-0002-3847-3853

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  1. Published

    Identification of let-7-regulated oncofetal genes.

    Boyerinas, B., Park, S., Shomron, N., Hedegaard, M. M., Vinther, Jeppe, Andersen, J. S., Feig, C., Xu, J., Burge, C. B. & Peter, M. E., 2008, In: Cancer Research. 68, 8, p. 2587-91 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing

    Enroth, Christel Hougård, Poulsen, L. D., Iversen, S., Kirpekar, F., Albrechtsen, Anders & Vinther, Jeppe, 2019, In: Nucleic Acids Research. 47, 20, 13 p., e126.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Excess primer degradation by Exo I improves the preparation of 3' cDNA ligation-based sequencing libraries

    Enroth, Christel Hougård, Fehler, A. O., Poulsen, L. D. & Vinther, Jeppe, 2019, In: BioTechniques. 67, 3, p. 110-116

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Flagella disruption in Bacillus subtilis increases amylase production yield

    Fehler, A. O., Kallehauge, T. B., Geissler, Adrian Sven, González-Tortuero, E., Seemann, Ernst Stefan, Gorodkin, Jan & Vinther, Jeppe, 2022, In: Microbial Cell Factories. 21, 11 p., 131.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Mutation of miRNA target sequences during human evolution.

    Gardner, P. P. & Vinther, Jeppe, 2008, In: Trends in Genetics. 24, 6, p. 262-5 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region

    Gawroński, P., Enroth, Christel Hougård, Kindgren, P., Marquardt, Sebastian, Karpiński, S., Leister, D., Jensen, Poul Erik, Vinther, Jeppe & Scharff, L. B., 2021, In: Cells. 10, 2, 22 p., 322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production

    Geissler, Adrian Sven, Poulsen, L. D., Doncheva, Nadezhda Tsankova, Anthon, Christian, Seemann, Ernst Stefan, González-Tortuero, E., Breüner, A., Jensen, Lars Juhl, Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2022, In: Frontiers in Microbiology. 13, 17 p., 909493.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis

    Geissler, Adrian Sven, Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, Christian, Seemann, Ernst Stefan, Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Bsgatlas: A unified bacillus subtilis genome and transcriptome annotation atlas with enhanced information access

    Geissler, Adrian Sven, Anthon, Christian, Alkan, F., González-Tortuero, E., Poulsen, L. D., Kallehauge, T. B., Breüner, A., Seemann, Ernst Stefan, Vinther, Jeppe & Gorodkin, Jan, 2021, In: Microbial Genomics. 7, 2, 17 p., 000524.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A putative promotor within the E6 ORF of human papillomavirus type 16 controls the expression of the E7 oncoprotein from a monocistronic mRNA

    Glahder, J., Hansen, C. N., Vinther, Jeppe, Madsen, B. S. & Norrild, B., 2003, In: Journal of General Virology. 84, p. 3429-3441

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    The early noncoding region of human papillomavirus type 16 is regulated by cytoplasmic polyadenylation factors

    Glahder, J. H., Kristiansen, K., Durand, M., Vinther, Jeppe & Norrild, B., 2010, In: Virus Research. 149, 2, p. 217-223 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    A promoter within the E6 ORF of human papillomavirus type 16 contributes to the expression of the E7 oncoprotein from a monocistronic mRNA

    Glahder, J. H., Hansen, C. N., Vinther, Jeppe, Madsen, B. S. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 12, p. 3429-41 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Origin of introns by 'intronization' of exonic sequences.

    Irimia, M., Rukov, J. L., Penny, D., Vinther, Jeppe, Garcia-Fernandez, J. & Roy, S. W., 2008, In: Trends in Genetics.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Quantitative regulation of alternative splicing in evolution and development

    Irimia, M., Rukov, J. L., Roy, S. W., Vinther, Jeppe & Garcia-Fernandez, J., 2009, In: BioEssays. 31, 1, p. 40-50 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Widespread evolutionary conservation of alternatively spliced exons in caenorhabditis.

    Irimia, M., Rukov, J. L., Penny, D., Garcia-Fernandez, J., Vinther, Jeppe & Roy, S. W., 2007, In: Molecular Biology and Evolution. 25, 2, p. 375-82 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Detection of reverse transcriptase termination sites using cDNA ligation and massive parallel sequencing

    Kielpinski, L. J., Boyd, M., Sandelin, Albin Gustav & Vinther, Jeppe, 2013, In: Methods in molecular biology (Clifton, N.J.). 1038, p. 213-31 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Reproducible analysis of sequencing-based RNA structure probing data with user-friendly tools

    Kielpinski, L. J., Sidiropoulos, N. & Vinther, Jeppe, 2015, Structures of large RNA molecules and their complexes. Woodson, S. A. & Allain, F. H. T. (eds.). Elsevier, p. 153-180 28 p. (Methods in Enzymology, Vol. 558).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  18. Published

    Massive parallel-sequencing-based hydroxyl radical probing of RNA accessibility

    Kielpinski, L. J. & Vinther, Jeppe, 2014, In: Nucleic Acids Research. 42, 8, 12 p., e70.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    RNase H sequence preferences influence antisense oligonucleotide efficiency

    Kiełpiński, Ł. J., Hagedorn, P. H., Lindow, M. & Vinther, Jeppe, 15 Dec 2017, In: Nucleic Acids Research. 45, 22, p. 12932-12944 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Body fluid identification of blood, saliva and semen using second generation sequencing of micro-RNA

    Petersen, C. H., Hjort, B. B., Tvedebrink, T., Kielpinski, L. J., Vinther, Jeppe & Morling, Niels, 2013, In: Forensic Science International: Genetics Supplement Series. 4, 1, p. e204-5 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    SHAPE selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data

    Poulsen, L. D., Kielpinski, L. J., Salama, S. R., Krogh, Anders & Vinther, Jeppe, 2015, In: R N A. 21, 5, p. 1042-1052 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    RNA-Seq for Bacterial Gene Expression

    Poulsen, L. D. & Vinther, Jeppe, 2018, In: Current Protocols in Nucleic Acid Chemistry. 73, 1, p. 1-12 e55.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Identification and characterization of a cluster of transcription start sites located in the E6 ORF of human papillomavirus type 16

    Rosenstierne, M. W., Vinther, Jeppe, Hansen, C. N., Prydsoe, M. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 11, p. 2909-20 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Conserved CPEs in the p53 3' untranslated region influence mRNA stability and protein synthesis

    Rosenstierne, M. W., Vinther, Jeppe, Mittler, G., Larsen, L., Mann, M. & Norrild, B., 2008, In: Anticancer Research. 28, 5A, p. 2553-9 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Identification and characterisation of a cluster of transcription start sites in the E6 ORF of the Human Papillomavirus type 16

    Rosenstierne, M., Vinther, Jeppe, Hansen, C., Fenger-Grøn, M. & Norrild, B., 2003, In: J.Gen.Virol.. 84, p. 2909-2920

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 10892