Kresten Lindorff-Larsen

Kresten Lindorff-Larsen

Professor

ORCID: 0000-0002-4750-6039

Publication year:
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101 - 200 out of 207Page size: 100
  1. 2019
  2. Published

    Computational and cellular studies reveal structural destabilization and degradation of MLH1 variants in Lynch syndrome

    Abildgaard, A. B., Stein, Amelie, Nielsen, S. V., Schultz-Knudsen, Katrine, Papaleo, E., Shrikhande, A., Hoffmann, Eva, Bernstein, I., Gerdes, Anne-Marie Axø, Takahashi, M., Ishioka, C., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2019, In: eLife. 8, 28 p., e49138 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Dissecting the statistical properties of the linear extrapolation method of determining protein stability

    Lindorff-Larsen, Kresten, 2019, In: Protein engineering, design & selection : PEDS. 32, 10, p. 471-479 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Fitting Corrections to an RNA Force Field Using Experimental Data

    Cesari, A., Bottaro, S., Lindorff-Larsen, Kresten, Banás, P., Sponer, J. & Bussi, G., 2019, In: Journal of Chemical Theory and Computation. 15, 6, p. 3425-3431

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Promoting transparency and reproducibility in enhanced molecular simulations

    Bonomi, M., Bussi, G., Camilloni, C., Tribello, G. A., Banas, P., Barducci, A., Bernetti, M., Bolhuis, P. G., Bottaro, S., Branduardi, D., Capelli, R., Carloni, P., Ceriotti, M., Cesari, A., Chen, H., Chen, W., Colizzi, F., De, S., De La Pierre, M., Donadio, D. & 54 others, Drobot, V., Ensing, B., Ferguson, A. L., Filizola, M., Fraser, J. S., Fu, H., Gasparotto, P., Gervasio, F. L., Giberti, F., Gil-Ley, A., Giorgino, T., Heller, G. T., Hocky, G. M., Iannuzzi, M., Invernizzi, M., Jelfs, K. E., Jussupow, A., Kirilin, E., Laio, A., Limongelli, V., Lindorff-Larsen, Kresten, Lohr, T., Marinelli, F., Martin-Samos, L., Masetti, M., Meyer, R., Michaelides, A., Molteni, C., Morishita, T., Nava, M., Paissoni, C., Papaleo, E., Parrinello, M., Pfaendtner, J., Piaggi, P., Piccini, G., Pietropaolo, A., Pietrucci, F., Pipolo, S., Provasi, D., Quigley, D., Raiteri, P., Raniolo, S., Rydzewski, J., Salvalaglio, M., Sosso, G. C., Spiwok, V., Sponer, J., Swenson, D. W. H., Tiwary, P., Valsson, O., Vendruscolo, M., Voth, G. A. & White, A., 2019, In: Nature Methods. 16, 8, p. 670-673

    Research output: Contribution to journal › Editorial › Research › peer-review

  6. Published

    Protein stability and degradation in health and disease

    Bjørnkjær, Lene, Abildgaard, A. B., Gersing, S. K., Stein, Amelie, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2019, Molecular Chaperones in Human Disorders. Donev, R. (ed.). Academic Press, p. 61-83 (Advances in Protein Chemistry and Structural Biology, Vol. 114).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  7. Published

    Side chain to main chain hydrogen bonds stabilize a polyglutamine helix in a transcription factor

    Escobedo, A., Topal, B., Kunze, M. B. A., Aranda, J., Chiesa, G., Mungianu, D., Bernardo-Seisdedos, G., Eftekharzadeh, B., Gairí, M., Pierattelli, R., Felli, I. C., Diercks, T., Millet, O., García, J., Orozco, M., Crehuet, R., Lindorff-Larsen, Kresten & Salvatella, X., 2019, In: Nature Communications. 10, 11 p., 2034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Structural Basis for Properdin Oligomerization and Convertase Stimulation in the Human Complement System

    Pedersen, D. V., Gadeberg, T. A. F., Thomas, C., Wang, Y., Joram, N., Jensen, R. K., Mazarakis, S. M. M., Revel, M., El Sissy, C., Petersen, S. V., Lindorff-Larsen, Kresten, Thiel, S., Laursen, N. S., Fremeaux-Bacchi, V. & Andersen, G. R., 2019, In: Frontiers in Immunology. 10, 19 p., 2007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Substrate-induced conformational dynamics of the dopamine transporter

    Nielsen, A. K., Möller, I. R., Wang, Y., Rasmussen, Søren Gøgsig Faarup, Lindorff-Larsen, Kresten, Rand, Kasper Dyrberg & Loland, Claus Juul, 2019, In: Nature Communications. 10, 14 p., 2714.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Toward mechanistic models for genotype-phenotype correlations in phenylketonuria using protein stability calculations

    Scheller, R., Stein, Amelie, Nielsen, S. V., Marin, F. I., Gerdes, Anne-Marie Axø, Di Marco, M., Papaleo, E., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2019, In: Human Mutation. 40, 4, p. 444-457

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. 2018
  12. Published

    On the Calculation of SAXS Profiles of Folded and Intrinsically Disordered Proteins from Computer Simulations

    Henriques, J., Arleth, Lise, Lindorff-Larsen, Kresten & Skepo, M., 3 Aug 2018, In: Journal of Molecular Biology. 430, 16, SI, p. 2521-2539

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations

    Bottaro, S., Bussi, G., Kennedy, S. D., Turner, D. H. & Lindorff-Larsen, Kresten, 18 May 2018, In: Science Advances. 4, 5, 8 p., eaar8521.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Dynamic activation and regulation of the mitogen-activated protein kinase p38

    Kumar, G. S., Clarkson, M. W., Kunze, M. B. A., Granata, D., Wand, A. J., Lindorff-Larsen, Kresten, Page, R. & Peti, W., 1 May 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 18, p. 4655-4660 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A Combined Simulation and SAXS Study of the Dynamics of Lipid Nanodiscs

    Bengtsen, T., Holm-Janas, Viktor, Midtgaard, S. R., Arleth, Lise & Lindorff-Larsen, Kresten, 17 Feb 2018, In: Biophysical Journal. 114, 3, Supp. 1, p. 559A-559A 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel

    Santner, P., Martins, J. M. D. S., Laursen, J. S., Behrendt, L., Riber, Leise, Olsen, Christian Adam, Arkin, I. T., Winther, Jakob R., Willemoës, Martin & Lindorff-Larsen, Kresten, 2018, In: Biochemistry. 57, 41, p. 5949-5956

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Biophysical experiments and biomolecular simulations: a perfect match?

    Bottaro, S. & Lindorff-Larsen, Kresten, 2018, In: Science. 361, 6400, p. 355-360 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  18. Published

    Cancer Mutations of the Tumor Suppressor SPOP Disrupt the Formation of Active, Phase-Separated Compartments

    Bouchard, J. J., Otero, J. H., Scott, D. C., Szulc, E., Martin, E. W., Sabri, N., Granata, D., Marzahn, M. R., Lindorff-Larsen, Kresten, Salvatella, X., Schulman, B. A. & Mittag, T., 2018, In: Molecular Cell. 72, 1, p. 19-36, e1-e8

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Editorial overview: Theory and simulation: Interpreting experimental data at the molecular level

    Best, R. B. & Lindorff-Larsen, Kresten, 2018, In: Current Opinion in Structural Biology. 49, p. iv-v 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  20. Published

    Enhancing coevolution-based contact prediction by imposing structural self-consistency of the contacts

    Kassem, M. M., Christoffersen, L. B., Cavalli, A. & Lindorff-Larsen, Kresten, 2018, In: Scientific Reports. 8, 11112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Frequency adaptive metadynamics for the calculation of rare-event kinetics

    Wang, Y., Valsson, O., Tiwary, P., Parrinello, M. & Lindorff-Larsen, Kresten, 2018, In: Journal of Chemical Physics. 149, 7, p. 1-7 072309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Gs protein peptidomimetics as allosteric modulators of the β2-adrenergic receptor

    Boyhus, L. E., Danielsen, Mia, Bengtson, N. S., Kunze, M. B. A., Kubiak, X., Sminia, T. J., Løper, J. H., Tran, P. T., Lindorff-Larsen, Kresten, Rasmussen, Søren Gøgsig Faarup, Mathiesen, Jesper M. & Pedersen, D. S., 2018, In: RSC Advances. 8, 4, p. 2219-2228 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    How well do force fields capture the strength of salt bridges in proteins?

    Ahmed, M. C. H., Papaleo, E. & Lindorff-Larsen, Kresten, 2018, In: PeerJ. 6, 17 p., 4967.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Molecular dynamics ensemble refinement of the heterogeneous native state of NCBD using chemical shifts and NOEs

    Papaleo, E., Camilloni, C., Teilum, Kaare, Vendruscolo, M. & Lindorff-Larsen, Kresten, 2018, In: PeerJ. 6, p. 1-24 e5125.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Monte Carlo Sampling of Protein Folding by Combining an All-Atom Physics-Based Model with a Native State Bias

    Wang, Y., Tian, P., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2018, In: Journal of Physical Chemistry B. 122, 49, p. 11174-11185

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Random mutagenesis analysis of the Influenza A M2 proton channel reveals novel resistance mutants

    Santner, P., Martins, J. M. D. S., Kampmeyer, Caroline, Hartmann-Petersen, Rasmus, Laursen, J. S., Stein, Amelie, Olsen, Christian Adam, Arkin, I. T., Winther, Jakob R., Willemoës, Martin & Lindorff-Larsen, Kresten, 2018, In: Biochemistry. 57, 41, p. 5957-5968

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Role of protein dynamics in transmembrane receptor signalling

    Wang, Y., Bugge, K. Ø., Kragelund, Birthe Brandt & Lindorff-Larsen, Kresten, 2018, In: Current Opinion in Structural Biology. 48, p. 74-82 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  28. Published

    Structural Basis of Membrane Protein Chaperoning through the Mitochondrial Intermembrane Space

    Weinhaupl, K., Lindau, C., Hessel, A., Wang, Y., Schültze, C., Jores, T., Melchionda, L., Schönfisch, B., Kalbacher, H., Bersch, B., Rapaport, D., Brennich, M., Lindorff-Larsen, Kresten, Wiedemann, N. & Schanda, P., 2018, In: Cell. 175, 5, p. 1365-1379, e25

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Structural heterogeneity and dynamics in protein evolution and design

    Johansson, Kristoffer Enøe & Lindorff-Larsen, Kresten, 2018, In: Current Opinion in Structural Biology. 48, p. 157-163 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. 2017
  31. Published

    Evolution i overhalingsbanen

    Abildgaard, A. B., Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten & Winther, Jakob R., 15 Dec 2017, In: Weekendavisen. 2017, 50, p. Ideer: 13 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

  32. Published

    Blocking protein quality control to counter hereditary cancers

    Kampmeyer, Caroline, Nielsen, S. V., Bjørnkjær, Lene, Stein, Amelie, Gerdes, Anne-Marie Axø, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, Dec 2017, In: Genes, Chromosomes & Cancer. 56, 12, p. 823-831 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    A phosphorylation-motif for tuneable helix stabilisation in intrinsically disordered proteins - Lessons from the sodium proton exchanger 1 (NHE1)

    Hendus-Altenburger, R., Lambrughi, M., Terkelsen, Thilde Bagger, Pedersen, Stine Helene Falsig, Papaleo, E., Lindorff-Larsen, Kresten & Kragelund, Birthe Brandt, Sep 2017, In: Cellular Signalling. 37, p. 40-51 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Biomolecular conformational changes and ligand binding: from kinetics to thermodynamics

    Wang, Y., Martins, J. & Lindorff-Larsen, Kresten, Sep 2017, In: Chemical Science. 8, 9, p. 6466-6473 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    An efficient method for estimating the hydrodynamic radius of disordered protein conformations

    Nygaard, M., Kragelund, Birthe Brandt, Papaleo, E. & Lindorff-Larsen, Kresten, 8 Aug 2017, In: Biophysical Journal. 113, 3, p. 550-557 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Mapping the universe of RNA tetraloop folds

    Bottaro, S. & Lindorff-Larsen, Kresten, 25 Jul 2017, In: Biophysical Journal. 113, 2, p. 257-267 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Predicting the impact of Lynch syndrome-causing missense mutations from structural calculations

    Nielsen, S. V., Stein, Amelie, Dinitzen, A. B., Papaleo, E., Tatham, M. H., Poulsen, E. G., Kassem, M. M., Rasmussen, Lene Juel, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 19 Apr 2017, In: PLoS Genetics. 13, 4, 26 p., e1006739.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Diversity-oriented peptide stapling: a third generation copper-catalysed azide–alkyne cycloaddition stapling and functionalisation strategy

    Tran, T. P., Larsen, C. Ø., Røndbjerg, T., de Foresta, M., Kunze, M. B. A., Marek, A., Hartvig Løper, J., Boyhus, L., Knuhtsen, A., Lindorff-Larsen, Kresten & Pedersen, D. S., 8 Mar 2017, In: Chemistry: A European Journal. 23, 14, p. 3490-3495 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Conformational rigidity and protein dynamics at distinct timescales regulate PTP1B activity and allostery

    Choy, M. S., Li, Y., Machado, L. E. S. F., Kunze, M. B. A., Connors, C. R., Wei, X., Lindorff-Larsen, Kresten, Page, R. & Peti, W., 16 Feb 2017, In: Molecular Cell. 65, 4, p. 644-658 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Class I Cytokine Receptors: Towards the Inside

    Steinocher, H., Bugge, K. Ø., Nikolajsen, L. F., Lindorff-Larsen, Kresten, Brooks, A. & Kragelund, Birthe Brandt, 2017, In: Biophysical Society. Annual Meeting. Abstracts. 112, 3. Suppl. 1, p. 171A 1 p., 845-Plat.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  41. 2016
  42. Published

    Understanding single-pass transmembrane receptor signaling from a structural viewpoint—what are we missing?

    Bugge, K. Ø., Lindorff-Larsen, Kresten & Kragelund, Birthe Brandt, Dec 2016, In: The FEBS Journal. 283, 24, p. 4424-4451 28 p.

    Research output: Contribution to journal › Review › Research › peer-review

  43. Published

    A Monte Carlo study of the early steps of functional amyloid formation

    Tian, P., Lindorff-Larsen, Kresten, Boomsma, Wouter, Jensen, Mogens Høgh & Otzen, D. E., 2016, In: P L o S One. 11, 1, 18 p., e0146096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A combined computational and structural model of the full-length human prolactin receptor

    Bugge, K. Ø., Papaleo, E., Haxholm, G. W., Hopper, J. T. S., Robinson, C. V., Olsen, Johan Gotthardt, Lindorff-Larsen, Kresten & Kragelund, Birthe Brandt, 2016, In: Nature Communications. 7, 11 p., 11578.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    A soluble, folded protein without charged amino acid residues

    Højgaard, C., Kofoed, Christian, Espersen, R., Johansson, Kristoffer Enøe, Villa, M., Willemoës, Martin, Lindorff-Larsen, Kresten, Teilum, Kaare & Winther, Jakob R., 2016, In: Biochemistry. 55, 28, p. 3949–3956 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Bioinformatics analysis identifies several intrinsically disordered human E3 ubiquitin-protein ligases

    Boomsma, Wouter, Nielsen, S. V., Lindorff-Larsen, Kresten, Hartmann-Petersen, Rasmus & Ellgaard, Lars, 2016, In: PeerJ. 4, 18 p., e1725.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Computational redesign of thioredoxin is hypersensitive towards minor conformational changes in the backbone template

    Johansson, Kristoffer Enøe, Johansen, Nicolai Tidemand, Christensen, S., Horowitz, S., Bardwell, J. C. A., Olsen, Johan Gotthardt, Willemoës, Martin, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J., Hamelryck, Thomas Wim & Winther, Jakob R., 2016, In: Journal of Molecular Biology. 428, 21, p. 4361-4377 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    DNA-binding protects p53 from interactions with cofactors involved in transcription-independent functions

    Lambrughi, M., De Gioia, L., Gervasio, F. L., Lindorff-Larsen, Kresten, Nussinov, R., Urani, C., Bruschi, M. & Papaleo, E., 2016, In: Nucleic Acids Research. 44, 19, p. 9096-9109 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Mapping transiently formed and sparsely populated conformations on a complex energy landscape

    Wang, Y., Papaleo, E. & Lindorff-Larsen, Kresten, 2016, In: eLife. 5, 35 p., e17505.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Picosecond to Millisecond Structural Dynamics in Human Ubiquitin

    Lindorff-Larsen, Kresten, Maragakis, P., Piana, S. & Shaw, D. E., 2016, In: Journal of Physical Chemistry B. 120, 33, p. 8313-8320 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Structure of the bacterial cytoskeleton protein bactofilin by NMR chemical shifts and sequence variation

    Kassem, M. M., Wang, Y., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2016, In: Biophysical Journal. 110, 11, p. 2342-2348 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    The role of protein loops and linkers in conformational dynamics and allostery

    Papaleo, E., Saladino, G., Lambrughi, M., Lindorff-Larsen, Kresten, Gervasio, F. L. & Nussinov, R., 2016, In: Chemical Reviews. 116, 11, p. 6391-6423 33 p.

    Research output: Contribution to journal › Review › Research › peer-review

  53. Published

    Topological constraints and modular structure in the folding and functional motions of GlpG, an intramembrane protease

    Schafer, N. P., Truong, H. H., Otzen, D. E., Lindorff-Larsen, Kresten & Wolynes, P. G., 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 8, p. 2098-2103 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. 2015
  55. Published

    A two-step protein quality control pathway for a misfolded DJ-1 variant in fission yeast

    Mathiassen, S. G., Larsen, I. B., Poulsen, E. G., Madsen, C. T., Papaleo, E., Lindorff-Larsen, Kresten, Kragelund, Birthe Brandt, Nielsen, Michael Lund, Kriegenburg, F. & Hartmann-Petersen, Rasmus, 2015, In: The Journal of Biological Chemistry. 290, 34, p. 21141-21153 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Comparing molecular dynamics force fields in the essential subspace

    Martin-García, F., Papaleo, E., Gomez-Puertas, P., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2015, In: PLoS ONE. 10, 3, 16 p., e0121114.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    ENCORE: Software for Quantitative Ensemble Comparison

    Tiberti, M., Papaleo, E., Bengtsen, T., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2015, In: PLoS Computational Biology. 11, 10, 16 p., e1004415.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Exploiting hydrophobicity for efficient production of transmembrane helices for structure determination by NMR spectroscopy

    Bugge, K. Ø., Steinocher, H., Brooks, A. J., Lindorff-Larsen, Kresten & Kragelund, Birthe Brandt, 2015, In: Analytical Chemistry. 87, 18, p. 9126–9131 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Interaction networks in protein folding via atomic-resolution experiments and long-time-scale molecular dynamics simulations

    Sborgi, L., Verma, A., Piana, S., Lindorff-Larsen, Kresten, Cerminara, M., Santiveri, C. M., Shaw, D. E., De Alba, E. & Muñoz, V., 2015, In: Journal of the American Chemical Society. 137, 20, p. 6506-6516 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Structure of a functional amyloid protein subunit computed using sequence variation

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Journal of the American Chemical Society. 137, 1, p. 22–25 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    What does evolution tell us about the structure of a functional amyloid protein?

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D. E., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Biophysical Journal. 108, 2, Supplement 1, p. 227a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  62. 2014
  63. Published

    CECAM workshop on intrinsically disordered proteins

    Rösner, Heike Ilona, Papaleo, E., Haxholm, G. W., Best, R. B., Kragelund, Birthe Brandt & Lindorff-Larsen, Kresten, 2014, In: Intrinsically Disordered Proteins. 2, 1, p. 1-5 5 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  64. Published

    Combining experiments and simulations using the maximum entropy principle

    Boomsma, Wouter, Ferkinghoff-Borg, J. & Lindorff-Larsen, Kresten, 2014, In: PLoS Computational Biology. 10, 2, 9 p., e1003406.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Communication routes in ARID domains between distal residues in Helix 5 and the DNA-binding loops

    Invernizzi, G., Tiberti, M., Lambrughi, M., Lindorff-Larsen, Kresten & Papaleo, E., 2014, In: P L o S Computational Biology (Online). 10, 9, 13 p., e1003744.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Conformational changes and free energies in a Proline isomerase

    Papaleo, E., Sutto, L., Gervasio, F. L. & Lindorff-Larsen, Kresten, 2014, In: Journal of Chemical Theory and Computation. 10, 9, p. 4169-4174 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts

    Boomsma, Wouter, Tian, P., Frellsen, J., Ferkinghoff-Borg, J., Hamelryck, Thomas Wim, Lindorff-Larsen, Kresten & Vendruscolo, M., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 38, p. 13852-13857 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Probabilistic determination of native state ensembles of proteins

    Olsson, S., Vögeli, B. R., Cavalli, A., Boomsma, Wouter, Ferkinghoff-Borg, J., Lindorff-Larsen, Kresten & Hamelryck, Thomas Wim, 2014, In: Journal of Chemical Theory and Computation. 10, 8, p. 3484-3491 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Robust estimation of diffusion-optimized ensembles for enhanced sampling

    Tian, P., Jónsson, S. Æ., Ferkinghoff-Borg, J., Krivov, S. V. .., Lindorff-Larsen, Kresten, Irbäck, A. & Boomsma, Wouter, 2014, In: Journal of Chemical Theory and Computation. 10, 2, p. 543–553 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. 2013
  71. Published

    A sticky cage can slow down folding

    Boomsma, Wouter & Lindorff-Larsen, Kresten, 2013, In: Biophysical Journal. 104, 5, p. 964-965 2 p.

    Research output: Contribution to journal › Comment/debate › Research

  72. Atomic-level description of ubiquitin folding

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 15, p. 5915-5920 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Atomistic description of the folding of a dimeric protein

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2013, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 117, 42, p. 12935-12942 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure

    Boomsma, Wouter, Frellsen, J., Harder, T. P., Bottaro, S., Johansson, Kristoffer Enøe, Tian, P., Stovgaard, K., Andreetta, C., Olsson, S., Valentin, J., Antonov, L. D., Christensen, A. S., Borg, M., Jensen, Jan Halborg, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2013, In: Journal of Computational Chemistry. 34, 19, p. 1697-1705 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Protein structure validation and refinement using amide proton chemical shifts derived from quantum mechanics

    Christensen, A. S., Linnet, T. E., Borg, M., Boomsma, Wouter, Lindorff-Larsen, Kresten, Hamelryck, Thomas Wim & Jensen, Jan Halborg, 2013, In: PLoS ONE. 8, 12, 10 p., e84123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    The Structure of the Central Side Chain is Crucial for Anoplin Hemolytic Activity

    Munk, J., Thøgersen, L., Uggerhøj, L. E., Wimmer, R., Frimodt-Møller, N., Lindorff-Larsen, Kresten & Hansen, Paul Robert, 2013, Proceedings of the 23rd American Peptide Symposium. Lebl, M. (ed.). American Peptide Society

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  77. Published

    Variational optimization of an all-atom implicit solvent force field to match explicit solvent simulation data

    Bottaro, S., Lindorff-Larsen, Kresten & Best, R. B., 2013, In: Journal of Chemical Theory and Computation. 9, 12, p. 5641-5652 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. 2012

  79. Evaluating the effects of cutoffs and treatment of long-range electrostatics in protein folding simulations

    Piana, S., Lindorff-Larsen, Kresten, Dirks, R. M., Salmon, J. K., Dror, R. O. & Shaw, D. E., 2012, In: P L o S One. 7, 6, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Paths of long-range communication in the E2 enzymes of family 3: a molecular dynamics investigation

    Papaleo, E., Lindorff-Larsen, Kresten & Gioia, L. D., 2012, In: Physical Chemistry Chemical Physics. 14, p. 12515-12525 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Protein folding kinetics and thermodynamics from atomistic simulation

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 44, p. 17845-17850 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Structure and dynamics of an unfolded protein examined by molecular dynamics simulation

    Lindorff-Larsen, Kresten, Trbovic, N., Maragakis, P., Piana, S. & Shaw, D. E., 2012, In: Journal of the American Chemical Society. 134, 8, p. 3787-3791 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Systematic validation of protein force fields against experimental data

    Lindorff-Larsen, Kresten, Maragakis, P., Piana, S., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 2012, In: P L o S One. 7, 2, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. 2011

  85. Computational design and experimental testing of the fastest-folding ß-sheet protein

    Piana, S., Sarkar, K., Lindorff-Larsen, Kresten, Guo, M., Gruebele, M. & Shaw, D. E., 7 Jan 2011, In: Journal of Molecular Biology. 405, 1, p. 43-48 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. How fast-folding proteins fold

    Lindorff-Larsen, Kresten, Piana, S., Dror, R. O. & Shaw, D. E., 2011, In: Science (New York, N.Y.). 334, 6055, p. 517-20 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. How robust are protein folding simulations with respect to force field parameterization?

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2011, In: Biophysical Journal (2011). 100, 9, p. L47-L49

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. 2010

  89. Improved side-chain torsion potentials for the Amber ff99SB protein force field

    Lindorff-Larsen, Kresten, Piana, S., Palmo, K., Maragakis, P., Klepeis, J. L., Dror, R. O. & Shaw, D. E., Jun 2010, In: Proteins: Structure, Function, and Bioinformatics. 78, 8, p. 1950-8 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Atomic-level characterization of the structural dynamics of proteins

    Shaw, D. E., Maragakis, P., Lindorff-Larsen, Kresten, Piana, S., Dror, R. O., Eastwood, M. P., Bank, J. A., Jumper, J. M., Salmon, J. K., Shan, Y. & Wriggers, W., 2010, In: Science (New York, N.Y.). 330, 6002, p. 341-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Principles of conduction and hydrophobic gating in K+ channels

    Jensen, M. Ø., Borhani, D. W., Lindorff-Larsen, Kresten, Maragakis, P., Jogini, V., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 13, p. 5833-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. 2009

  93. Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations

    Wriggers, W., Stafford, K. A., Shan, Y., Piana, S., Maragakis, P., Lindorff-Larsen, Kresten, Miller, P. J., Gullingsrud, J., Rendleman, C. A., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 1 Oct 2009, In: Journal of Chemical Theory and Computation. 5, 10, p. 2595-2605 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Long-timescale molecular dynamics simulations of protein structure and function

    Klepeis, J. L., Lindorff-Larsen, Kresten, Dror, R. O. & Shaw, D. E., 2009, In: Current Opinion in Structural Biology. 19, 2, p. 120-7 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Millisecond-scale molecular dynamics simulations on Anton

    Shaw, D. E., Dror, R. O., Salmon, J. K., Grossman, J. P., Mackenzie, K. M., Bank, J. A., Young, C., Deneroff, M. M., Batson, B., Bowers, K. J., Chow, E., Eastwood, M. P., Ierardi, D., Klepeis, J. L., Kuskin, J., Larson, R. H., Lindorff-Larsen, K., Maragakis, P., Moraes, M. A., Piana, S. & 2 others, Shan, Y. & Towles, B., 2009, Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis. Association for Computing Machinery, 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  96. Published

    Similarity measures for protein ensembles

    Lindorff-Larsen, Kresten & Ferkinghoff-Borg, J., 2009, In: PLoS ONE. 4, 1, 13 p., e4203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. 2008
  98. Published

    Experimental parameterization of an energy function for the simulation of unfolded proteins

    Nørgaard, A. B., Ferkinghoff-Borg, J. & Lindorff-Larsen, Kresten, 2008, In: Biophysical Journal. 94, 1, p. 182-192

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins

    Maragakis, P., Lindorff-Larsen, Kresten, Eastwood, M. P., Dror, R. O., Klepeis, J. L., Arkin, I. T., Jensen, M. Ø., Xu, H., Trbovic, N., Friesner, R. A., Iii, A. G. P. & Shaw, D. E., 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 19, p. 6155-6158 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. 2007

  101. BPPred: a Web-based computational tool for predicting biophysical parameters of proteins

    Geierhaas, C. D., Nickson, A. A., Lindorff-Larsen, Kresten, Clarke, J. & Vendruscolo, M., 2007, In: Protein Science. 16, 1, p. 125-34 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Detection of initiation sites in protein folding of the four helix bundle ACBP by chemical shift analysis.

    Modig, K., Jürgensen, V. W., Lindorff-Larsen, Kresten, Fieber, W., Bohr, H. G. & Poulsen, F. M., 2007, In: FEBS Letters. 581, 25, p. 4965-4971 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. 2006
  104. Published

    Characterization of the residual structure in the unfolded state of the Delta 131 Delta fragment of staphylococcal nuclease

    Francis, C. J., Lindorff-Larsen, Kresten, Best, R. B. & Bendruscolo, M., 2006, In: Proteins - Structure Function and Bioinformatics. 65, 1, p. 145-52

    Research output: Contribution to journal › Journal article › Research › peer-review

  105. Published

    Conformational fluctuations affect protein alignment in dilute liquid crystal media.

    Louhivuori, M., Otten, R., Lindorff-Larsen, Kresten & Annila, A., 2006, In: Journal of the American Chemical Society. 128, 13, p. 4371-4376 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  106. Published

    Relation between native ensembles and experimental structures of proteins.

    Best, R. B., Lindorff-Larsen, Kresten, DePristo, M. A. & VEndruscolo, M., 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 29, p. 10901-6

    Research output: Contribution to journal › Journal article › Research › peer-review

  107. Structure of the regulatory apparatus of a calcium-dependent protein kinase (CDPK): a novel mode of calmodulin-target recognition

    Chandran, V., Stollar, E. J., Lindorff-Larsen, Kresten, Harper, J. F., Chazin, W. J., Dobson, C. M., Luisi, B. F. & Christodoulou, J., 2006, In: Journal of Molecular Biology. 357, 2, p. 400-10 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  108. 2005
  109. Published

    Formation of Native and Non-native Interactions in Ensembles of Denatured ACBP Molecules from Paramagnetic Relaxation Enhancement Studies

    Kristjansdottir, S., Lindorff-Larsen, Kresten, Fieber, W., Dobson, C. M., Vendruscolo, M. & Poulsen, F. M., 2005, In: Journal of Molecular Biology. 347, 5, p. 1053-1062

    Research output: Contribution to journal › Journal article › Research › peer-review

  110. Published

    Interpreting Dynamically-Averaged Scalar Couplings in Proteins

    Lindorff-Larsen, Kresten, Best, R. B. & Vendruscolo, M., 2005, In: Journal of Biomolecular NMR. 32, 4, p. 273-280

    Research output: Contribution to journal › Journal article › Research › peer-review

  111. Mapping Long-Range Interactions in a-Synuclein using Spin-Label NMR and Ensemble Molecular Dynamics Simulations

    Dedmon, M. M., Lindorff-Larsen, Kresten, Christodoulou, J., Vendruscolo, M. & Dobson, C. M., 2005, In: Journal of the American Chemical Society. 127, 2, p. 476-477

    Research output: Contribution to journal › Journal article › Research › peer-review

  112. Protein folding and the organization of the protein topology universe

    Lindorff-Larsen, Kresten, Røgen, P., Paci, E., Vendruscolo, M. & Dobson, C. M., 2005, In: TIBS -Trends in Biochemical Sciences. Regular ed.. 30, 1, p. 13-19

    Research output: Contribution to journal › Journal article › Research

  113. Published

    Simultaneous determination of protein structure and dynamics

    Lindorff-Larsen, Kresten, Best, R. B., DePristo, M. A., Dobson, C. M. & Vendruscolo, M., 2005, In: Nature. 433, 7022, p. 128-132

    Research output: Contribution to journal › Journal article › Research › peer-review

  114. Transition State Contact Orders Correlate with Protein Folding Rates

    Paci, E., Lindorff-Larsen, Kresten, Dobson, C. M., Karplus, M. & Vendruscolo, M., 2005, In: Journal of Molecular Biology. 352, 3, p. 495-500

    Research output: Contribution to journal › Journal article › Research › peer-review

  115. 2004

  116. Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints

    Paci, E., Friel, C. T., Lindorff-Larsen, Kresten, Radford, S. E., Karplus, M. & Vendruscolo, M., 2004, In: Proteins: Structure, Function, and Bioinformatics. 54, 3, p. 513-25 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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