Robin Andersson
Associate Professor
Computational and RNA Biology
Ole Maaløes Vej 5
2200 København N.
- Published
PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells
Agrawal-Singh, S., Lerdrup, Mads, Gomes, A. R., van de Werken, H. J. G., Johansen, Jens Vilstrup, Andersson, Robin, Sandelin, Albin Gustav, Helin, K. & Hansen, K., 2019, In: eLife. 8, p. 1-32 32 p., e40364.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative transcriptomics of primary cells in vertebrates
Alam, T., Agrawal, S., Severin, J., Young, R. S., Andersson, R., Arner, E., Hasegawa, A., Lizio, M., Ramilowski, J. A., Abugessaisa, I., Ishizu, Y., Noma, S., Tarui, H., Taylor, M. S., Lassmann, T., Itoh, M., Kasukawa, T., Kawaji, H., Marchionni, L., Sheng, G. & 5 others, , 2020, In: Genome Research. 30, 7, p. 951-961 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Methods for fighting emerging pathogens
Alcantara, L. C. J., Amenga-Etego, L., Andersson, Robin, Bhaumik, M., Choi, Y. K., Decaluwe, H., Geoghegan, J., Haagmans, B. L., López, S., Mukhtar, M. M., Nelwan, E., Rahal, E. A., Sato, K., Sklan, E. H. & Fang, Y. S. C., 2022, In: Nature Methods. 19, 4, p. 395-397 3 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
A segmental maximum a posteriori approach to genome-wide copy number profiling
Andersson, Robin, Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Ståhl, T., Dumanski, J. P. & Komorowski, J., 15 Mar 2008, In: Bioinformatics (Online). 24, 6, p. 751-8 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model
Andersson, Robin, 2015, In: BioEssays. 37, 3, p. 314-323 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
RoSy: A Rough Knowledge Base System
Andersson, Robin, Vitória, A., Małuszyński, J. & Komorowski, J., 2005, Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing. Slezak, D., Yao, J., Peters, J. F., Ziarko, W. & Hu, X. (eds.). Springer, p. 48-58 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 3642 LNAI).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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An atlas of active enhancers across human cell types and tissues
Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Lange, J. B., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O. & 30 others, , 2014, In: Nature. 507, 7493, p. 455-461 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A unified architecture of transcriptional regulatory elements
Andersson, Robin, Sandelin, Albin Gustav & Danko, C. G., Aug 2015, In: Trends in Genetics. 31, 8, p. 426-433 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Human gene promoters are intrinsically bidirectional
Andersson, Robin, Chen, Y., Core, L., Lis, J. T., Sandelin, Albin Gustav & Jensen, T. H., 2015, In: Molecular Cell. 60, 3, p. 346-347 2 p.Research output: Contribution to journal › Letter › Research › peer-review
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Determinants of enhancer and promoter activities of regulatory elements
Andersson, Robin & Sandelin, Albin Gustav, 2020, In: Nature Reviews Genetics. 21, 2, p. 71-87 17 p.Research output: Contribution to journal › Review › Research › peer-review
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Nuclear stability and transcriptional directionality separate functionally distinct RNA species
Andersson, Robin, Refsing Andersen, P., Valen, E., Core, L. J., Lange, Jette Bornholdt, Boyd, M., Jensen, T. H. & Sandelin, Albin Gustav, 2014, In: Nature Communications. 5, 10 p., 5336.Research output: Contribution to journal › Journal article › Research › peer-review
Nucleosomes are well positioned in exons and carry characteristic histone modifications
Andersson, Robin, Enroth, S., Rada-Iglesias, A., Wadelius, C. & Komorowski, J., Oct 2009, In: Genome Research. 19, 10, p. 1732-41 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
Arner, E., Daub, C. O., Vitting-Seerup, K., Andersson, R., Lilje, B., Drabløs, F., Lennartsson, A., Rönnerblad, M., Hrydziuszko, O., Vitezic, M., Freeman, T. C., Alhendi, A. M. N., Arner, P., Axton, R., Baillie, J. K., Beckhouse, A., Bodega, B., Briggs, J., Brombacher, F., Davis, M. & 89 others, , 2015, In: Science (New York, N.Y.). 347, 6225, p. 1010-1014 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation
Arribas Hernandez, Laura, Rennie, Sarah, Schon, M., Porcelli, C., Enugutti, B., Andersson, Robin, Nodine, M. D. & Brodersen, Peter, 2021, In: eLife. 10, 27 p., e72377.Research output: Contribution to journal › Journal article › Research › peer-review
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Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2
Arribas Hernandez, Laura, Rennie, Sarah, Köster, T., Porcelli, C., Lewinski, M., Staiger, D., Andersson, Robin & Brodersen, Peter, 2021, In: eLife. 10, 33 p., e72375.Research output: Contribution to journal › Journal article › Research › peer-review
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Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease
Baillie, J. K., Bretherick, A., Haley, C. S., Clohisey, S., Gray, A., Neyton, L. P. A., Barrett, J., Stahl, E. A., Tenesa, A., Andersson, R., Brown, J. B., Faulkner, G. J., Lizio, M., Schaefer, U., Daub, C., Itoh, M., Kondo, N., Lassmann, T., Kawai, J., Mole, D. & 14 others, , 2018, In: PLoS Computational Biology. 14, 3, 24 p., e1005934.Research output: Contribution to journal › Journal article › Research › peer-review
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Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells
Bakoulis, Stylianos, Krautz, Robert, Alcaraz, N., Salvatore, Marco & Andersson, Robin, 2022, In: Nucleic acids symposium series. 50, 4, p. 2111-2127 17 p., 088.Research output: Contribution to journal › Journal article › Research › peer-review
Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts
Björkholm, P., Daniluk, P., Kryshtafovych, A., Fidelis, K., Andersson, Robin & Hvidsten, T. R., 15 May 2009, In: Bioinformatics (Online). 25, 10, p. 1264-70 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2
Boyd, M., Coskun, M., Lilje, B., Andersson, Robin, Hoof, I., Lange, Jette Bornholdt, Dahlgaard, K., Olsen, Jørgen, Vitezic, M., Bjerrum, Jakob Tveiten , Seidelin, Jakob Benedict, Nielsen, Ole Haagen, Troelsen, J. & Sandelin, Albin Gustav, 2014, In: D N A Research. 21, 6, p. 569-583 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies
Boyd, M., Thodberg, M., Vitezic, M., Lange, J. B., Vitting-Seerup, K., Chen, Y., Coskun, M., Li, Y., Lo, B. Z. S., Klausen, P., Schweiger, P., Pedersen, A. G., Rapin, N. P. J-P., Skovgaard, K., Dahlgaard, K., Andersson, R., Terkelsen, T. B., Lilje, B., Troelsen, J. T., Petersen, A. M. & 7 others, , 2018, In: Nature Communications. 9, 19 p., 1661.Research output: Contribution to journal › Journal article › Research › peer-review
Phenotypically concordant and discordant monozygotic twins display different DNA copy-number-variation profiles
Bruder, C. E. G., Piotrowski, A., Gijsbers, A. A. C. J., Andersson, R., Erickson, S., Diaz de Ståhl, T., Menzel, U., Sandgren, J., von Tell, D., Poplawski, A., Crowley, M., Crasto, C., Partridge, E. C., Tiwari, H., Allison, D. B., Komorowski, J., van Ommen, G-J. B., Boomsma, D. I., Pedersen, N. L., den Dunnen, J. T. & 2 others, , Mar 2008, In: American Journal of Human Genetics. 82, 3, p. 763-71 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters
Chen, Y., Pai, A. A., Herudek, J., Lubas, M., Meola, N., Järvelin, A. I., Andersson, Robin, Pelechano, V., Steinmetz, L. M., Jensen, T. H. & Sandelin, Albin Gustav, 2016, In: Nature Genetics. 48, 9, p. 984-994 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions
Davis, M. R., Andersson, Robin, Severin, J., de Hoon, M., Bertin, N., Baillie, J. K., Kawaji, H., Sandelin, Albin Gustav, Forrest, A. R. R. & Summers, K. M., 2014, In: Molecular Genetics and Metabolism. 112, 3, p. 73-83 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Profiling of copy number variations (CNVs) in healthy individuals from three ethnic groups using a human genome 32 K BAC-clone-based array
Díaz de Ståhl, T., Sandgren, J., Piotrowski, A., Nord, H., Andersson, Robin, Menzel, U., Bogdan, A., Thuresson, A., Poplawski, A., von Tell, D., Hansson, C. M., Elshafie, A. I., Elghazali, G., Imreh, S., Nordenskjöld, M., Upadhyaya, M., Komorowski, J., Bruder, C. E. G. & Dumanski, J. P., Mar 2008, In: Human Mutation. 29, 3, p. 398-408 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 32384007
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Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2
Research output: Contribution to journal › Journal article › Research › peer-review
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Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
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A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.
Research output: Contribution to journal › Journal article › Research › peer-review
Published