Søren Johannes Sørensen
Professor
Microbiology
Universitetsparken 15
2100 København Ø
- 2020
- Published
The microbiome of captive hamadryas baboons
Li, Xuan Ji, Trivedi, Urvish, Brejnrod, A. D., Vestergaard, G. A., Mortensen, M. S., Bertelsen, Mads Frost & Sørensen, Søren Johannes, 2020, In: BMC Animal Microbiome. 2, 10 p., 25.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids
Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing
Gupta, S., Mortensen, M. S., Schjørring, S., Trivedi, Urvish, Vestergaard, G., Stokholm, Jakob, Bisgaard, H., Krogfelt, K. A. & Sørensen, Søren Johannes, 2019, In: Communications Biology. 2, p. 1-7 7 p., 291.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass
Jakobsen, A. M., Bahl, M. I., Buschhardt, T., Hansen, T. B., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Nesbakken, T. & Aabo, S., 2019, In: International Journal of Food Microbiology. 295, p. 8-18 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA-and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters
Gülay, A., Fowler, S. J., Tatari, K., Thamdrup, B., Albrechtsen, H., Abu Al-Soud, W., Sørensen, Søren Johannes & Smets, B. F., 2019, In: mBio. 10, 6, 14 p., e01870-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
Liu, W., Jacquiod, S., Brejnrod, A., Russel, J., Burmølle, Mette & Sørensen, Søren Johannes, 2019, In: ISME Journal. 13, 12, p. 3054-3066 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps
Dahl, M. B., Brejnrod, A. D., Russel, J., Sørensen, Søren Johannes & Schnittler, M., 2019, In: Microbial Ecology. 78, 3, p. 764-780Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of long-term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce
Paul Chowdhury, S., Babin, D., Sandmann, M., Jacquiod, S., Sommermann, L., Sørensen, Søren Johannes, Fliessbach, A., Mäder, P., Geistlinger, J., Smalla, K., Rothballer, M. & Grosch, R., 2019, In: Environmental Microbiology. 21, 7, p. 2426-2439Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli
Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites
Li, Xuan Ji, Brejnrod, A. D., Ernst, M., Rykær, M., Herschend, J., Olsen, N. M. C., Dorrestein, P. C., Rensing, C. & Sørensen, Søren Johannes, 2019, In: Environment International. 126, p. 454-467 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of long-term agricultural management practices on soil prokaryotic communities
Babin, D., Deubel, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Geistlinger, J., Grosch, R. & Smalla, K., 2019, In: Soil Biology & Biochemistry. 129, p. 17-28Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems
Romero, I. A., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes & Romero, E., 2019, In: Science of the Total Environment. 691, p. 749-759 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma
Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J., Mortensen, M., Brejnrod, A., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2019, In: Nature Communications. 10, 8 p., 5001.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecies interactions reduce selection for a biofilm-optimized variant in a four-species biofilm model
Røder, Henriette Lyng, Liu, W., Sørensen, Søren Johannes, Madsen, Jonas Stenløkke & Burmølle, Mette, 2019, In: Environmental Microbiology Reports. 11, 6, p. 835-839 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam
Nguyen, T. P. O., Hansen, M. A., Hansen, Lars Hestbjerg, Horemans, B., Sørensen, Søren Johannes, De Mot, R. & Springael, D., 2019, In: FEMS Microbiology Ecology. 95, 1, p. 1-11 fiy214.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil
Blau, K., Jacquiod, S., Sørensen, Søren Johannes, Su, J., Zhu, Y., Smalla, K. & Jechalke, S., 2019, In: Frontiers in Microbiology. 10, p. 1-15 725.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Priority of Early Colonizers but No Effect on Cohabitants in a Synergistic Biofilm Community
Olsen, N. M. C., Røder, Henriette Lyng, Russel, J., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 2019, In: Frontiers in Microbiology. 10, 8 p., 1949.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantitative Flow Cytometry to Understand Population Heterogeneity in Response to Changes in Substrate Availability in Escherichia coli and Saccharomyces cerevisiae Chemostats
Heins, A., Johanson, T., Han, S., Lundin, L., Carlquist, M., Gernaey, K. V., Sørensen, Søren Johannes & Lantz, A. E., 2019, In: Frontiers in Bioengineering and Biotechnology. 7, 15 p., 187.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome
Wolters, B., Fornefeld, E., Jechalke, S., Su, J., Zhu, Y., Sørensen, Søren Johannes, Smalla, K. & Jacquiod, S., 2019, In: F E M S Microbiology Reviews. 95, 1, p. 1-14 fiy193.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tailings microbial community profile and prediction of its functionality in basins of tungsten mine
Chung, A. P., Coimbra, C., Farias, P., Francisco, R., Branco, R., Simão, F. V., Gomes, E., Pereira, A., Vila, M. C., Fiúza, A., Mortensen, M. S., Sørensen, Søren Johannes & Morais, P. V., 2019, In: Scientific Reports. 9, 13 p., 19596.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures
Heins, A., Lundin, L., Nunes, I., Gernaey, K. V., Sørensen, Søren Johannes & Eliasson Lantz, A., 2019, In: Biotechnology Progress. 35, 3, e2796.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits
Würth, D. G., Dahl, M. B., Trouillier, M., Wilmking, M., Unterseher, M., Scholler, M., Sørensen, Søren Johannes, Mortensen, M. & Schnittler, M., 2019, In: Fungal Ecology. 41, p. 177-186 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants
Teseo, S., van Zweden, J. S., Pontieri, L., Kooij, P. W., Sørensen, Søren Johannes, Wenseleers, T., Poulsen, Michael, Boomsma, Jacobus J. & Sapountzis, P., 2019, In: Animal Behaviour. 150, p. 239-254Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions
Trivedi, Urvish, Madsen, Jonas Stenløkke, Everett, J., Fell, C., Russel, J., Haaber, J., Crosby, H. A., Horswill, A. R., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 11 Dec 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11771-E11779Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enhanced bacterial mutualism through an evolved biofilm phenotype
Røder, Henriette Lyng, Herschend, J., Russel, J., Andersen, M. F., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 1 Nov 2018, In: I S M E Journal. 12, p. 2608-2618 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities
Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community
Li, L., Dechesne, A., He, Z., Madsen, Jonas Stenløkke, Nesme, Joseph, Sørensen, Søren Johannes & Smets, B. F., 8 May 2018, In: Environmental Science & Technology Letters. 5, 5, p. 260-265 6 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Genetic barcoding of dark-spored myxomycetes (Amoebozoa): identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies
Dahl, M. B., Brejnrod, A. D., Unterseher, M., Hoppe, T., Feng, Y., Novozhilov, Y., Sørensen, Søren Johannes & Schnittler, M., Mar 2018, In: Molecular Ecology Resources. 18, 2, p. 306-318 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil bacteria show different tolerance ranges to an unprecedented disturbance
Nunes, I. M., Jurburg, S., Jacquiod, S. J. A., Brejnrod, A. D., Falcão Salles, J., Priemé, Anders & Sørensen, Søren Johannes, Feb 2018, In: Biology and Fertility of Soils. 54, 2, p. 189–202 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial indicators for soil quality
Schloter, M., Nannipieri, P., Sørensen, Søren Johannes & van Elsas, J. D., Jan 2018, In: Biology and Fertility of Soils. 54, 1, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rifaximin has minor effects on bacterial composition, inflammation and bacterial translocation in cirrhosis: a randomized trial
Kimer, N., Pedersen, J. S., Tavenier, J., Christensen, J. E., Busk, T. M., Hobolth, L., Krag, A., Abu Al-Soud, W., Mortensen, M. S., Sørensen, Søren Johannes, Møller, Søren & Bendtsen, Flemming, Jan 2018, In: Journal of Gastroenterology and Hepatology. 33, 1, p. 307-314 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina
Behrendt, L., Raina, J., Lutz, A., Kot, W., Albertsen, M., Nielsen, P. H., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2018, In: I S M E Journal. 12, p. 556–567 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer
Madsen, Jonas Stenløkke, Hylling, Ole, Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, Leise, Vestergaard, G. A. & Sørensen, Søren Johannes, 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial social interactions and the emergence of community-intrinsic properties
Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 2018, In: Current Opinion in Microbiology. 42, p. 104-109 6 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization
Wolters, B., Jacquiod, S. J. A., Sørensen, Søren Johannes, Widyasari-Mehta, A., Bech, T. B., Kreuzig, R. & Smalla, K., 2018, In: F E M S Microbiology Ecology. 94, 4, 13 p., fiy027.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows
Zhu, Z., Kristensen, L., Difford, G. F., Poulsen, M., Noel, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 2018, In: Journal of Dairy Science. 101, 11, p. 9847-9862Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity
Kang, D., Herschend, J., Abu Al-Soud, W., Mortensen, M. S., Gonzalo, M., Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2018, In: Bioresource Technology. 270, p. 303-310Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fluorescence recovery allows theimplementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments
Pinilla Redondo, Rafael, Riber, Leise & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 6, 9 p., e02507-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease
Kanfra, X., Liu, B., Beerhues, L., Sørensen, Søren Johannes & Heuer, H., 2018, In: Frontiers in Plant Science. 9, p. 1-13 1666.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
How Microbial Aggregates Protect against Nanoparticle Toxicity
Tang, J., Wu, Y., Esquivel-Elizondo, S., Sørensen, Søren Johannes & Rittmann, B. E., 2018, In: Trends in Biotechnology. 36, 11, p. 1171-1182Research output: Contribution to journal › Review › Research › peer-review
- Published
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
Muhammed, Musemma Kedir, Olsen, M. L., Kot, Witold, Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maturation of the gut microbiome and risk of asthma in childhood
Stokholm, Jakob, Blaser, M. J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J. E., Vinding, R. K., Schoos, A. M., Kunøe, A., Fink, N. R., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brejnrod, A. D., Mortensen, M. S., Abu Al-Soud, W., Sørensen, Søren Johannes & Bisgaard, H., 2018, In: Nature Communications. 9, 10 p., 141.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm
Liu, W., Russel, J., Burmølle, Mette, Sørensen, Søren Johannes & Madsen, Jonas Stenløkke, 2018, In: I S M E Journal. 12, p. 1940-1951 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities
Raghupathi, P. K., Zupančič, J., Brejnrod, A. D., Jacquiod, S. J. A., Houf, K., Burmølle, Mette, Gunde-Cimerman, N. & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 5, 17 p., e02755-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives
Pinilla Redondo, Rafael, Cyriaque, V., Jacquiod, S., Sørensen, Søren Johannes & Riber, Leise, 2018, In: Plasmid. 99, p. 56-67Research output: Contribution to journal › Review › Research › peer-review
- Published
Nutrient Fortification of Human Donor Milk Affects Intestinal Function and Protein Metabolism in Preterm Pigs
Sun, Jing, Li, Y., Nguyen, Duc Ninh, Mortensen, M. S., van den Akker, C. H. P., Skeath, T., Pors, S. E., Pankratova, Stanislava, Rudloff, S., Sørensen, Søren Johannes, Burrin, D. G., Thymann, Thomas & Sangild, Per Torp, 2018, In: Journal of Nutrition. 148, 3, p. 336-347 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: a double-blind, randomized, placebo-controlled trial
Wei, S., Mortensen, M. S., Stokholm, Jakob, Brejnrod, A. D., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Trivedi, Urvish, Bisgaard, H. & Sørensen, Søren Johannes, 2018, In: EBioMedicine. 38, p. 265-272Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4269
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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3026
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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2836
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Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
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