Biologisk Institut

 

 
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  1. 2023
  2. Udgivet

    ClockstaRX: testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 s.

    Publikation: Working paper › Preprint › Forskning

  3. Udgivet

    The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

    Mc Cartney, A. M., Formenti, G., Mouton, A., Panis, D. D., Marins, L. S., Leitão, H. G., Diedericks, G., Kirangwa, J., Morselli, M., Salces-Ortiz, J., Escudero, N., Iannucci, A., Natali, C., Svardal, H., Fernández, R., Pooter, T. D., Joris, G., Strazisar, M., Wood, J., Herron, K. E. & 30 flere, Seehausen, O., Watts, P. C., Shaw, F., Davey, R. P., Minotto, A., Fernández, J. M., Böhne, A., Alegria, C., Alioto, T., Alves, P. C., Amorim, I. R., Aury, J., Backstrom, N., Baldrian, P., Baltrunaite, L., Barta, E., Bed’Hom, B., Belser, C., Bergsten, J., Bertrand, L., Bilandžija, H., Binzer-Panchal, M., Bista, I., Blaxter, M., Borges, P. A., Dias, G. B., Bosse, M., Garg, S., Madsen, O. & Stiller, Josefin, 2023, 51 s. (bioRxiv).

    Publikation: Working paper › Preprint › Forskning

  4. 2022
  5. Udgivet

    Extensive inheritance of gut microbial communities in a superorganismal termite

    Sinotte, Veronica Marie, Renelies-Hamilton, J., Andreu-Sánchez, S., Vasseur-Cognet, M. & Poulsen, Michael, 30 aug. 2022, Research Square-Preprint, 34 s.

    Publikation: Working paper › Preprint › Forskning

  6. Udgivet

    Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

    Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 s.

    Publikation: Working paper › Preprint › Forskning

  7. Udgivet

    Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development

    Kim, Junil, Rothová, M. M., Liao, Linbu, Rhee, S., Weng, Guangzheng, David, E., Amit, I., Hajkarim, M. C., Brickman, Joshua Mark & Won, K. J., 2022, Cold Spring Harbor Laboratory, 26 s. (bioRxiv).

    Publikation: Working paper › Preprint › Forskning

  8. Udgivet

    Plant YTHDF proteins are direct effectors of antiviral immunity against an m6A-containing RNA virus

    Martínez-Pérez, M., Aparicio, F., Arribas Hernandez, Laura, Tankmar, Mathias Due, Rennie, Sarah, Brodersen, Peter & Pallas, V., 2022, 36 s.

    Publikation: Working paper › Preprint › Forskning

  9. Udgivet

    Species-specific traits mediate avian demographic responses under past climate change

    Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2022, bioRxiv, 24 s.

    Publikation: Working paper › Preprint › Forskning

  10. Udgivet

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2022, 30 s.

    Publikation: Working paper › Preprint › Forskning

  11. Udgivet

    Transfer learning reveals sequence determinants of regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Winther, Ole & Andersson, Robin, 2022, bioRxiv, 24 s.

    Publikation: Working paper › Preprint › Forskning

  12. 2021
  13. Udgivet

    A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

    Gabrielaite, M., Torp, M., Rasmussen, M., Andreu-Sánchez, S., Vieira, Filipe Garrett, Pedersen, C., Kinalis, S., Madsen, M., Yde, C., Rønn, O. L., Marvig, R., Østrup, O., Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2021, bioRxiv, 29 s.

    Publikation: Working paper › Preprint › Forskning

  14. Udgivet

    Computational and experimental assessment of backbone templates for computational protein design

    Marin, Frederikke Isa, Johansson, K. E., O'Shea, Charlotte, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, 15 s.

    Publikation: Working paper › Preprint › Forskning

  15. Udgivet

    Explicitly modelling microtopography in permafrost landscapes in a land-surface model (JULES vn5.4_microtopography)

    Smith, N. D., Chadburn, S. E., Burke, E. J., Aas, K. S., Althuizen, I. H. J., Boike, J., Christiansen, C. T., Etzelmüller, B., Friborg, Thomas, Lee, H., Rumbold, H., Turton, R. & Westermann, S., 2021, 43 s.

    Publikation: Working paper › Preprint › Forskning

  16. Udgivet

    Towards the extended barcode concept: Generating DNA reference data through genome skimming of danish plants

    Chua, Physilia, Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bruun, Hans Henrik, Hartvig, Ida, Coissac, E., Boessenkool, S., Alsos, I. G. & Bohmann, Kristine, 2021, 38 s. (bioRxiv).

    Publikation: Working paper › Preprint › Forskning

  17. Udgivet

    hyperTRIBER: a flexible R package for the analysis of differential RNA editing

    Rennie, Sarah, Magnusson, D. H. & Andersson, Robin, 2021, 12 s.

    Publikation: Working paper › Preprint › Forskning

  18. 2020
  19. Udgivet

    Wnt-mediated interactions of tumor-initiating cells with a macrophage niche drive skin tumor formation

    Fontenete, S., Christensen, J., Martinez-Silgado, A., Zarzuela, E., Muñoz, J., Megias, D., Castellana, D., Loewe, R. & Perez-Moreno, Mirna, 18 jul. 2020, bioRxiv, 58 s. (bioRxiv).

    Publikation: Working paper › Preprint › Forskning

  20. Udgivet

    Simple attributes predict the importance of plants as hosts to the richness of fungi and arthropods

    Bruun, Hans Henrik, Brunbjerg, A. K., Dalby, L., Fløjgaard, C., Frøslev, Tobias Guldberg, Haarder, S., Heilmann-Clausen, Jacob, Høye, T. T., Læssøe, Thomas & Ejrnæs, R., 18 apr. 2020, bioRxiv, 27 s. (bioRxiv).

    Publikation: Working paper › Preprint › Forskning

  21. Udgivet

    Half of the world’s tree biodiversity is unprotected and is increasingly threatened by human activities

    Guo, W-Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., Frutos, A. D., Dias, A. S., Giroldo, A. B. & 38 flere, Guo, K., Gutiérrez, A. G., Hattingh, W., He, T., Hietz, P., Hough-Snee, N., Jansen, S., Kattge, J., Klein, T., Komac, B., Kraft, N., Kramer, K., Lavorel, S., Lusk, C. H., Martin, A. R., Mencuccini, M., Michaletz, S. T., Minden, V., Mori, A. S., Niinemets, Ü., Onoda, Y., Onstein, R. E., Peñuelas, J., Pillar, V. D., Pisek, J., Robroek, B. J. M., Schamp, B., Slot, M., Sosinski, Ê., Soudzilovskaia, N. A., Thiffault , N., van Bodegom, P., Van Der Plas, F., Wright, I. J., Xu , W., Zheng , J., Enquist, B. J. & Svenning, J., 2020, 42 s. (bioRxiv).

    Publikation: Working paper › Preprint › Forskning

  22. 2018
  23. Udgivet

    Binning microbial genomes using deep learning

    Nissen, J. N., Sønderby, C. K., Armenteros, J. J. A., Grønbech, Christopher Heje, Nielsen, H. B., Petersen, T. N., Winther, Ole & Rasmussen, Simon, 2018, (bioRxiv).

    Publikation: Working paper › Preprint › Forskning

  24. Udgivet

    The GBAF chromatin remodeling complex binds H3K27ac and mediates enhancer transcription

    Jefimov, K., Alcaraz, N., Kloet, S. L., Värv, S., Sakya, S. A., Vaagenso, C., Vermeulen, M., Aasland, R. & Andersson, Robin, 2018, 31 s.

    Publikation: Working paper › Preprint › Forskning

  25. Udgivet

    The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids

    Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 s.

    Publikation: Working paper › Preprint › Forskning

  26. 2017
  27. Udgivet

    Plasmids, viruses, and other circular elements in rat gut

    Jørgensen, T. S., Hansen, M. A., Xu, Z., Tabak, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2017, Cold Spring Harbor Laboratory Press, 30 s.

    Publikation: Working paper › Forskning

  28. 2012
  29. Udgivet

    Bevarelse af biodiversiteten i Danmark: En analyse af indsats og omkostninger

    Petersen, A. H., Strange, Niels, Anthon, S., Bjørner, T. B. & Rahbek, Carsten, 2012, De Økonomiske Råd, 120 s.

    Publikation: Working paper › Forskning

  30. 2008
  31. Udgivet

    Anbragte børn i Danmark: en deskriptiv analyse

    Ejrnæs, Mette, Ejrnæs, N. M. & Frederiksen, S. E., 2008, Institut for Sociologi, Socialt Arbejde og Organisation, Aalborg Universitet, 81 s.

    Publikation: Working paper › Forskning

  32. 2004
  33. Udgivet

    Outline of proposals for further behavioural welfare research on fur farmed animals, drawn up by the ethology group of the Subsection for Fur Animals under the Nordic Association of Agricultural Scientists

    Jeppesen, L. L., Hovland, A. L., Lidfors, L., Korhonen, H. & Gunnarsson, E., 2004, http://composit.dimea.se/filebank/files/20050322$100703$fil$01czhWL8YJKrrerNcgVJ.pdf, s. 16.

    Publikation: Working paper › Forskning