Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential
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Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. / Zhang, Gengyun; Liu, Xin; Quan, Zhiwu; Cheng, Shifeng; Xu, Xun; Pan, Shengkai; Xie, Min; Zeng, Peng; Yue, Zhen; Wang, Wenliang; Tao, Ye; Bian, Chao; Han, Changlei; Xia, Qiuju; Peng, Xiaohua; Cao, Rui; Yang, Xinhua; Zhan, Dongliang; Hu, Jingchu; Zhang, Yinxin; Li, Henan; Li, Hua; Li, Ning; Wang, Junyi; Wang, Chanchan; Wang, Renyi; Guo, Tao; Cai, Yanjie; Liu, Chengzhang; Xiang, Haitao; Shi, Qiuxiang; Huang, Ping; Chen, Qingchun; Li, Yingrui; Wang, Jun; Zhao, Zhihai; Wang, Jian.
I: Nature Biotechnology, Bind 30, Nr. 6, 2012, s. 549-554.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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TY - JOUR
T1 - Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential
AU - Zhang, Gengyun
AU - Liu, Xin
AU - Quan, Zhiwu
AU - Cheng, Shifeng
AU - Xu, Xun
AU - Pan, Shengkai
AU - Xie, Min
AU - Zeng, Peng
AU - Yue, Zhen
AU - Wang, Wenliang
AU - Tao, Ye
AU - Bian, Chao
AU - Han, Changlei
AU - Xia, Qiuju
AU - Peng, Xiaohua
AU - Cao, Rui
AU - Yang, Xinhua
AU - Zhan, Dongliang
AU - Hu, Jingchu
AU - Zhang, Yinxin
AU - Li, Henan
AU - Li, Hua
AU - Li, Ning
AU - Wang, Junyi
AU - Wang, Chanchan
AU - Wang, Renyi
AU - Guo, Tao
AU - Cai, Yanjie
AU - Liu, Chengzhang
AU - Xiang, Haitao
AU - Shi, Qiuxiang
AU - Huang, Ping
AU - Chen, Qingchun
AU - Li, Yingrui
AU - Wang, Jun
AU - Zhao, Zhihai
AU - Wang, Jian
PY - 2012
Y1 - 2012
N2 - Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a C(4) biofuel. It is a model system for other biofuel grasses, including switchgrass and pearl millet. We produced a draft genome (∼423 Mb) anchored onto nine chromosomes and annotated 38,801 genes. Key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum including two reshuffling events fusing rice chromosomes 7 and 9, 3 and 10 to foxtail millet chromosomes 2 and 9, respectively, that occurred after the divergence of foxtail millet and rice, and a single reshuffling event fusing rice chromosome 5 and 12 to foxtail millet chromosome 3 that occurred after the divergence of millet and sorghum. Rearrangements in the C(4) photosynthesis pathway were also identified.
AB - Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a C(4) biofuel. It is a model system for other biofuel grasses, including switchgrass and pearl millet. We produced a draft genome (∼423 Mb) anchored onto nine chromosomes and annotated 38,801 genes. Key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum including two reshuffling events fusing rice chromosomes 7 and 9, 3 and 10 to foxtail millet chromosomes 2 and 9, respectively, that occurred after the divergence of foxtail millet and rice, and a single reshuffling event fusing rice chromosome 5 and 12 to foxtail millet chromosome 3 that occurred after the divergence of millet and sorghum. Rearrangements in the C(4) photosynthesis pathway were also identified.
U2 - 10.1038/nbt.2195
DO - 10.1038/nbt.2195
M3 - Journal article
C2 - 22580950
VL - 30
SP - 549
EP - 554
JO - Nature Biotechnology
JF - Nature Biotechnology
SN - 1087-0156
IS - 6
ER -
ID: 46238778