Ecology and Evolution

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  1. 2022
  2. Published

    Candidemia among Hospitalized Pediatric Patients Caused by Several Clonal Lineages of Candida parapsilosis

    Hare, R. K., Arastehfar, A., Rosendahl, Søren, Charsizadeh, A., Daneshnia, F., Eshaghi, H., Mirhendi, H., Boekhout, T., Hagen, F. & Arendrup, Maiken Cavling, 2022, In: Journal of Fungi. 8, 2, 11 p., 183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    2022 BMC Ecology and Evolution image competition: the winning images

    Harman, J., Hipsley, Christy Anna, Jacobus, L. M., Liberles, D. A., Settele, J. & Traulsen, A., 2022, In: BMC Ecology and Evolution. 22, 6 p., 99.

    Research output: Contribution to journal › Editorial › Research › peer-review

  4. Published

    Nyt fra Svampeatlas

    Heilmann-Clausen, Jacob, Læssøe, Thomas, Frøslev, Tobias Guldberg, Petersen, J. H., Jeppesen, T. S. & Søchting, Ulrik, 2022, In: Svampe. 85, p. 19-27

    Research output: Contribution to journal › Journal article › Communication

  5. Published

    Circular DNA in the human germline and its association with recombination

    Henriksen, Rasmus Henrik Amund, Jenjaroenpun, P., Sjøstrøm, I. B., Jensen, Kristian HR, Prada Luengo, Inigo, Wongsurawat, T., Nookaew, I. & Regenberg, Birgitte, 2022, In: Molecular Cell. 82, 1, p. 209-217.e7

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Phylogenomic analyses of mud dragons (Kinorhyncha)

    Herranz, Maria, Stiller, Josefin, Worsaae, Katrine & Sørensen, Martin Vinther, 2022, In: Molecular Phylogenetics and Evolution. 168, 10 p., 107375.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Functional Diversity and Evolution of Bitter Taste Receptors in Egg-Laying Mammals

    Itoigawa, A., Hayakawa, T., Zhou, Y., Manning, A. D., KU, thw266, Grutzner, F. & Imai, H., 2022, In: Molecular Biology and Evolution. 39, 6, 9 p., msac107.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Estimating intrinsic growth rates of arthropods from partial life tables using predatory mites as examples

    Janssen, A., Fonseca, M. M., Marcossi, I., Kalile, M. O., Cardoso, A. C., Walerius, A. H., Hanel, A., Marques, V., Ferla, J. J., Farias, V., Carbajal, P. A. F., Pallini, A. & Nachman, Gøsta Støger, 2022, In: Experimental and Applied Acarology. 86, 3, p. 327-342 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  9. Published

    Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds

    Ji, Y., Feng, S., Wu, L., Fang, Q., Brüniche-Olsen, Anna, DeWoody, J. A., Cheng, Y., Zhang, D., Hao, Y., Song, G., Qu, Y., Suh, A., KU, thw266, Hackett, S. J. & Lei, F., 2022, In: Science Advances. 8, 35, 11 p., eabo0099.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Single-cell RNA sequencing technologies and applications: A brief overview

    Jovic, D., Liang, Xue, Zeng, H., Lin, L., Xu, F. & Luo, Y., 2022, In: Clinical and Translational Medicine. 12, 3, 20 p., e694.

    Research output: Contribution to journal › Review › Research › peer-review

  11. Published

    False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

    Kim, J., Lee, C., Ko, B. J., Yoo, D. A., Won, S., Phillippy, A. M., Fedrigo, O., KU, thw266, Howe, K., Wood, J., Durbin, R., Formenti, G., Brown, S., Cantin, L., Mello, C. V., Cho, S., Rhie, A., Kim, H. & Jarvis, E. D., 2022, In: Genome Biology. 23, 29 p., 204.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

    Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 p.

    Research output: Working paper › Preprint › Research

  13. Published

    Comparative Genomic and Metabolomic Analysis of Termitomyces Species Provides Insights into the Terpenome of the Fungal Cultivar and the Characteristic Odor of the Fungus Garden of Macrotermes natalensis Termites

    Kreuzenbeck, N. B., Seibel, E., Schwitalla, J. W., Fricke, J., Conlon, B. H., Schmidt, Suzanne, Hammerbacher, A., Köllner, T. G., Poulsen, Michael, Hoffmeister, D., Beemelmanns, C. & Pupo, M. T. (ed.), 2022, In: mSystems. 7, 1, 16 p., e01214-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Standards recommendations for the Earth BioGenome Project

    Lawniczak, M. K. N., Durbin, R., Flicek, P., Lindblad-Toh, K., Wei, X., Archibald, J. M., Baker, W. J., Belov, K., Blaxter, M. L., Bonet, T. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Crawford, A. J., Davey, R. P., Palma, F. D., Fang, Q., Haerty, W., Hall, N., Hoff, K. J. & 25 others, Howe, K., Jarvis, E. D., Johnson, W. E., Johnson, R. N., Kersey, P. J., Liu, X., Lopez, J. V., Myers, E. W., Pettersson, O. V., Phillippy, A. M., Poelchau, M. F., Pruitt, K. D., Rhie, A., Castilla-Rubio, J. C., Sahu, S. K., Salmon, N. A., Soltis, P. S., Swarbreck, D., Thibaud-Nissen, F., Wang, S., Wegrzyn, J. L., KU, thw266, Zhang, H., Lewin, H. A. & Richards, S., 2022, In: PNAS. 119, 4, 8 p., e2115639118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The Earth BioGenome Project 2020: Starting the clock

    Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., Conde, D. A. & 65 others, Corominas, M., Crandall, K. A., Crawford, A. J., DiPalma, F., Durbin, R., Ebenezer, T. E., Edwards, S. V., Fedrigo, O., Flicek, P., Formenti, G., Gibbs, R. A., Gilbert, M Thomas P, Goldstein, M. M., Graves, J. M., Greely, H. T., Grigoriev, I. V., Hackett, K. J., Hall, N., Haussler, D., Helgen, K. M., Hogg, C. J., Isobe, S., Jakobsen, K. S., Janke, A., Jarvis, E. D., Johnson, W. E., Jones, S. J. M., Karlsson, E. K., Kersey, P. J., Kim, J. H., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Leebens-Mack, J. H., Li, X., Lindblad-Toh, K., Liu, X., Lopez, J. V., Marques-Bonet, T., Mazard, S., Mazet, J. A. K., Mazzoni, C. J., Myers, E. W., O’Neill, R. J., Paez, S., Park, H., Robinson, G. E., Roquet, C., Ryder, O. A., Sabir, J. S. M., Shaffer, H. B., Shank, T. M., Sherkow, J. S., Soltis, P. S., Tang, B., Tedersoo, L., Uliano-Silva, M., Wang, K., Wei, X., Wetzer, R., Wilson, J. L., Xu, X., Yang, H., Yoder, A. D. & KU, thw266, 2022, In: PNAS. 119, 4, 7 p., e2115635118.

    Research output: Contribution to journal › Review › Research › peer-review

  16. Published

    Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation

    Li, F., Rane, R. V., Luria, V., Xiong, Z., Chen, J., Li, Z., Catullo, R. A., Griffin, P. C., Schiffer, M., Pearce, S., Lee, S. F., McElroy, K., Stocker, A., Shirriffs, J., Cockerell, F., Coppin, C., Sgrò, C. M., Karger, A., Cain, J. W., Weber, J. A. & 5 others, Santpere, G., Kirschner, M. W., Hoffmann, A. A., Oakeshott, J. G. & KU, thw266, 2022, In: Molecular Ecology Resources. 22, 4, p. 1559-1581 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Functional genomics analysis reveals the evolutionary adaptation and demographic history of pygmy lorises

    Li, M. L., Wang, S., Xu, P., Tian, H. Y., Bai, M., Zhang, Y. P., Shao, Y., Xiong, Z. J., Qi, X. G., Cooper, D. N., KU, thw266, Zhu, H. H. & Wu, D. D., 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 40, 10 p., e2123030119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A single-cell transcriptomic atlas tracking the neural basis of division of labour in an ant superorganism

    Li, Q., Wang, M., Zhang, P., Liu, Y., Guo, Q., Zhu, Y., Wen, T., Dai, X., Zhang, X., Nagel, M., Dethlefsen, B. H., Xie, N., Zhao, J., Jiang, W., Han, L., Wu, L., Zhong, W., Wang, Z., Wei, X., Dai, W. & 9 others, Liu, L., Xu, X., Lu, H., Yang, H., Wang, J., Boomsma, Jacobus J., Liu, C., KU, thw266 & Liu, W., 2022, In: Nature Ecology & Evolution. 6, 8, p. 1191-1204

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Draft genome assemblies of four manakins

    Li, X., Gao, R., Chen, G., Price, A. L., Øksnebjerg, Daniel Bilyeli, Hosner, Peter Andrew, Zhou, Y., KU, thw266 & Feng, S., 2022, In: Scientific Data. 9, 11 p., 564.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Origin and Deep Evolution of Human Endogenous Retroviruses in Pan-Primates

    Li, Y., KU, thw266 & Cui, J., 2022, In: Viruses. 14, 7, 14 p., 1370.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Transcription of the Alginate Operon in Pseudomonas aeruginosa Is Regulated by c-di-GMP

    Liang, Z., Rybtke, Morten Levin, Kragh, K. N., Johnson, O., Schicketanz, Muriel Leandra, Zhang, Yong, Andersen, Jens Bo & Tolker-Nielsen, Tim, 2022, In: Microbiology Spectrum. 10, 4, 13 p., e00675-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Probing the genomic limits of de-extinction in the Christmas Island rat

    Lin, J., Duchene, David, Carøe, C., Smith, O., Ciucani, M. M., Niemann, Jonas, Richmond, D., Greenwood, A. D., MacPhee, R., KU, thw266, Gopalakrishnan, Shyam & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 7, p. 1650-1656.e3

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs

    Lv, W., Pan, X., Han, P., Wang, Z., Feng, W., Xing, X., Wang, Q., Qu, K., Zeng, Y., Zhang, C., Xu, Z., Li, Y., Zheng, T., Lin, L., Liu, C., Liu, X., Li, H., Henriksen, R. A., Bolund, L., Lin, L. & 7 others, Jin, X., Yang, H., Zhang, X., Yin, T., Regenberg, Birgitte, He, F. & Luo, Y., 2022, In: Clinical and Translational Medicine. 12, 4, 16 p., e817.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Cross-species discrimination of vocal expression of emotional valence by Equidae and Suidae

    Maigrot, A., Hillmann, E. & Briefer, Elodie, 2022, In: BMC Biology. 20, 14 p., 106.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics

    Mao, Y. & KU, thw266, 2022, In: Nature Methods. 19, 6, p. 635-638 4 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  26. Published

    Independent evolution of intermediate bill widths in a seabird clade

    Masello, J. F., Ryan, P. G., Shepherd, L. D., Quillfeldt, P., Cherel, Y., Tennyson, A. J. D., Alderman, R., Calderón, L., Cole, T. L., Cuthbert, R. J., Dilley, B. J., Massaro, M., Miskelly, C. M., Navarro, J., Phillips, R. A., Weimerskirch, H. & Moodley, Y., 2022, In: Molecular Genetics and Genomics. 297, 1, p. 183-198 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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