Ecology and Evolution

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  1. 2022
  2. Published

    Grand Challenges in Coevolution

    Medina, M., Baker, D. M., Baltrus, D. A., Bennett, G. M., Cardini, U., Correa, A. M. S., Degnan, S. M., Christa, G., Kim, E., Li, J., Nash, David Richard, Marzinelli, E., Nishiguchi, M., Prada, C., Roth, M. S., Saha, M., Smith, C. I., Theis, K. R. & Zaneveld, J., 2022, In: Frontiers in Ecology and Evolution. 9, 11 p., 618251.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases

    Mohammadi, S., Özdemir, H. İ., Ozbek, P., Sumbul, F., Stiller, Josefin, Deng, Y., Crawford, A. J., Rowland, H., Storz, J., Andolfatto, P. & Dobler, S., 2022, In: Molecular Biology and Evolution. 39, 12, 13 p., msac258.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription: [Corrigendum]

    Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Neves, R. C., Jørgensen, Aslak, Schiøtt, M., Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 271, 8 p., 111245.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Extrachromosomal circular DNA in cancer: history, current knowledge, and methods

    Noer, Julie Boertmann, Hørsdal, O. K., Xiang, X., Luo, Y. & Regenberg, Birgitte, 2022, In: Trends in Genetics. 38, 7, p. 766-781 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    (2873) Proposal to conserve the name Ceratellopsis with a conserved type (Basidiomycota: Agaricales)

    Olariaga, I., Huhtinen, S., Læssøe, Thomas, Petersen, J. H., Hansen, K. & Parra, L. A., 2022, In: Taxon. 71, 2, p. 467-468 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  7. Published

    (2874–2877) Proposals to conserve the names Typhula with a conserved type, Macrotyphula against Sclerotium, and Phyllotopsidaceae against Sclerotiaceae, and to reject the name Sclerotium fulvum (Basidiomycota: Agaricales): Agaricales)

    Olariaga, I., Huhtinen, S., Læssøe, Thomas, Petersen, J. H., Hansen, K. & Parra, L. A., 2022, In: Taxon. 71, 2, p. 468-470 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  8. Published

    Massively targeted evaluation of therapeutic CRISPR off-targets in cells

    Pan, X., Qu, K., Yuan, H., Xiang, X., Anthon, C., Pashkova, L., Liang, X., Han, P., Corsi, G. I., Xu, F., Liu, P., Zhong, J., Zhou, Y., Ma, T., Jiang, H., Liu, J., Wang, J., Jessen, N., Bolund, L., Yang, H. & 5 others, Xu, X., Church, G. M., Gorodkin, Jan, Lin, L. & Luo, Y., 2022, In: Nature Communications. 13, 14 p., 4049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Arbuscular mycorrhizal fungal communities of pristine rainforests and adjacent sugarcane fields recruit from different species pools

    Pereira, C. M. R., López-García, Á., Maia, L. C., Frøslev, Tobias Guldberg, Kjøller, Rasmus & Rosendahl, Søren, 2022, In: Soil Biology and Biochemistry. 167, 9 p., 108585.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Goat kid recognition of their mothers' calls is not impacted by changes in fundamental frequency or formants

    Perroux, T. A., McElligott, A. G. & Briefer, Elodie, 2022, In: Journal of Zoology. 318, 4, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Social environment affects sensory gene expression in ant larvae

    Pulliainen, U., Morandin, C., Bos, N., Sundström, L. & Schultner, E., 2022, In: Insect Molecular Biology. 31, 1, p. 1-9 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Canalized gene expression during development mediates caste differentiation in ants

    Qiu, Bitao, Dai, X., Li, P., Larsen, Rasmus Stenbak, Li, Ruyan, Price, A. L., Ding, G., Texada, Michael James, Zhang, X., Zuo, D., Gao, Q., Jiang, W., Wen, T., Pontieri, L., Guo, C., Rewitz, Kim, Li, Q., Liu, W., Boomsma, Jacobus J. & KU, thw266, 2022, In: Nature Ecology and Evolution. 6, 11, p. 1753-1765

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Herpetofaunal diversity changes with climate: evidence from the Quaternary of McEachern’s Deathtrap Cave, southeastern Australia

    Ramm, T., Thorn, K. M., Hipsley, Christy Anna, Müller, J., Hocknull, S. & Melville, J., 2022, In: Journal of Vertebrate Paleontology. 41, 5, 23 p., e2009844.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    The Native Bees of Lolland (Denmark) Revisited after 100 Years: The Demise of the Specialists

    Rasmussen, C., Kjær Sydenham, M. A., Schmidt, H. T. & Madsen, Henning Bang, 2022, In: Insects. 13, 2, 17 p., 153.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Nutrient-limited subarctic caves harbour more diverse and complex bacterial communities than their surface soil

    Reboleira, Ana Sofia, Bodawatta, Kasun Harshana, Ravn, N. M. R., Lauritzen, S., Skoglund, R. Ø., Poulsen, Michael, Michelsen, Anders & Jønsson, Knud Andreas, 2022, In: Environmental Microbiomes. 17, 17 p., 41.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Impact of the COVID-19 Pandemic on Primate Research and Conservation

    Reuter, K. E., Andriantsaralaza, S., Hansen, Malene Friis, Lafleur, M., Jerusalinsky, L., Louis, E. E., Ratzimbazafy, J., Williamson, E. A. & Mittermeier, R. A., 2022, In: Animals. 12, 9, 18 p., 1214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A history of the MetaSUB consortium: Tracking urban microbes around the globe

    Ryon, K. A., Tierney, B. T., Frolova, A., Kahles, A., Desnues, C., Ouzounis, C., Gibas, C., Bezdan, D., Deng, Y., He, D., Dias-Neto, E., Elhaik, E., Afshin, E., Grills, G., Iraola, G., Suzuki, H., Werner, J., Udekwu, K., Schriml, L., Bhattacharyya, M. & 14 others, Oliveira, M., Zambrano, M. M., Hazrin-Chong, N. H., Osuolale, O., Łabaj, P. P., Tiasse, P., Rapuri, S., Borras, S., Pozdniakova, S., Shi, T., Sezerman, U., Rodo, X., Sezer, Z. H. & Mason, C. E., 2022, In: iScience. 25, 11, 12 p., 104993.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  18. Published

    Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum

    Sahraei, S. E., Sánchez-García, M., Montoliu-Nerin, M., Manyara, D., Bergin, C., Rosendahl, Søren & Rosling, A., 2022, In: Mycorrhiza. 32, 5-6, p. 361-371 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Vandløbenes CO2-overmætning og biodiversitet

    Sand-Jensen, Kaj, Martinsen, K. T., Kjær, Johan Emil, Sø, Jonas Stage, Baumane, M., Kragh, T., Båstrup-Spohr, Lars, Bruun, Hans Henrik & Riis, T., 2022, In: Vand & Jord. 2, p. 44-48

    Research output: Contribution to journal › Journal article › Communication

  20. Published

    The chemical ecology of the fungus-farming termite symbiosis

    Schmidt, Suzanne, Kildgaard, S., Guo, H., Beemelmanns, C. & Poulsen, Michael, 2022, In: Natural Product Reports. 39, 2, p. 231-248 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    High-speed chases along the seafloor put Bryde's whales at risk of entanglement

    Segre, P. S., drf168, drf168, Kahane-Rapport, S. R., Gough, W. T., Meÿer, M. A., Lombard, A. T., Goldbogen, J. A. & Penry, G. S., 2022, In: Conservation Science and Practice. 4, 5, 9 p., e12646.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Scaling of maneuvering performance in baleen whales: larger whales outperform expectations

    Segre, P. S., Gough, W. T., Roualdes, E. A., Cade, D. E., Czapanskiy, M. F., Fahlbusch, J., Kahane-Rapport, S. R., Oestreich, W. K., Bejder, L., Bierlich, K. C., Burrows, J. A., Calambokidis, J., Chenoweth, E. M., di Clemente, J., Durban, J. W., Fearnbach, H., Fish, F. E., Friedlaender, A. S., Hegelund, P., Johnston, D. W. & 13 others, Nowacek, D. P., Oudejans, M. G., Penry, G. S., Potvin, J., Simon, M., Stanworth, A., Straley, J. M., Szabo, A., Videsen, S. K. A., Visser, F., Weir, C. R., Wiley, D. N. & Goldbogen, J. A., 2022, In: Journal of Experimental Biology. 225, 5, 15 p., jeb243224.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Extensive inheritance of gut microbial communities in a superorganismal termite

    Sinotte, Veronica Marie, Renelies-Hamilton, J., Andreu-Sánchez, S., Vasseur-Cognet, M. & Poulsen, Michael, 30 Aug 2022, Research Square-Preprint, 34 p.

    Research output: Working paper › Preprint › Research

  24. Published

    Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates

    Stiller, Josefin, Short, G., Hamilton, H., Saarman, N., Longo, S., Wainwright, P., Rouse, G. W. & Simison, W. B., 2022, In: BMC Biology. 20, 1, 75.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)

    Tilic, E., Stiller, Josefin, Campos, E., Pleijel, F. & Rouse, G. W., 2022, In: Molecular Phylogenetics and Evolution. 166, 10 p., 107339.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Successful treatment of psoriasis with adalimumab induced no changes in the gut microbiota

    Todberg, T., Egeberg, Alexander, Zachariae, Claus, Sørensen, N., Pedersen, Oluf Borbye & Skov, Lone, 2022, In: Journal of the European Academy of Dermatology and Venereology. 36, 6, p. e464-e467 4 p.

    Research output: Contribution to journal › Comment/debate › Research

  27. Published

    A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

    Toh, H., Yang, C., Formenti, G., Raja, K., Yan, L., Tracey, A., Chow, W., Howe, K., Bergeron, L. A., Zhang, G., Haase, B., Mountcastle, J., Fedrigo, O., Fogg, J., Kirilenko, B., Munegowda, C., Hiller, M., Jain, A., Kihara, D., Rhie, A. & 9 others, Phillippy, A. M., Swanson, S. A., Jiang, P., Clegg, D. O., Jarvis, E. D., Thomson, J. A., Stewart, R., Chaisson, M. J. P. & Bukhman, Y. V., 2022, In: BMC Biology. 20, 21 p., 245.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Heat waves affect prey and predators differently via developmental plasticity: who may benefit most from global warming?

    Tscholl, T., Nachman, Gøsta Støger, Spangl, B. & Walzer, A., 2022, In: Pest Management Science. 78, 3, p. 1099-1108 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The drivers of avian-haemosporidian prevalence in tropical lowland forests of New Guinea in three dimensions

    Vinagre-Izquierdo, C., Bodawatta, Kasun Harshana, Chmel, K., Renelies-Hamilton, J., Paul, L., Munclinger, P., Poulsen, Michael & Jønsson, Knud Andreas, 2022, In: Ecology and Evolution. 12, 2, 14 p., e8497.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Trans- and Within-Generational Developmental Plasticity May Benefit the Prey but Not Its Predator during Heat Waves

    Walzer, A., Nachman, Gøsta Støger, Spangl, B., Stijak, M. & Tscholl, T., Aug 2022, In: Biology. 11, 8, 20 p., 1123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences

    Wanchai, V., Jenjaroenpun, P., Leangapichart, T., Arrey Tané, Gerard, Burnham, C. M., Tümmler, M. C., Delgado-Calle, J., Regenberg, Birgitte & Nookaew, I., 2022, In: Briefings in Bioinformatics. 23, 6, 11 p., bbac422.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

    Wang, F., Ding, P., Liang, X., Ding, X., Brandt, C. B., Sjöstedt, E., Zhu, J., Bolund, S., Zhang, L., de Rooij, L. P. M. H., Luo, L., Wei, Y., Zhao, W., Lv, Z., Haskó, J., Li, R., Qin, Q., Jia, Y., Wu, W., Yuan, Y. & 25 others, Pu, M., Wang, H., Wu, A., Xie, L., Liu, P., Chen, F., Herold, J., Kalucka, J., Karlsson, M., Zhang, X., Helmig, R. B., Fagerberg, L., Lindskog, C., Pontén, F., Uhlen, M., Bolund, L., Jessen, N., Jiang, H., Xu, X., Yang, H., Carmeliet, P., Mulder, J., Chen, D., Lin, L. & Luo, Y., 2022, In: Nature Communications. 13, 18 p., 3620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Understanding Yeast Phenotypes via the Evolution of Synthetic Genome

    Wang, Y., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 222 p.

    Research output: Book/Report › Ph.D. thesis › Research

  34. Published

    Transcriptomic signatures responding to PKM2 activator TEPP-46 in the hyperglycemic human renal proximal epithelial tubular cells

    Wang, Z., Yu, J., Hao, Dan, Liu, X. & Wang, X., 2022, In: Frontiers in Endocrinology. 13, 16 p., 965379.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Phylogeny and sex chromosome evolution of palaeognathae

    Wang, Z., Zhang, J., Xu, X., Witt, C., Deng, Y., Chen, G., Meng, G., Feng, S., Xu, L., Szekely, T., KU, thw266 & Zhou, Q., 2022, In: Journal of Genetics and Genomics. 49, 2, p. 109-119 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Does childhood exposure to biodiverse greenspace reduce the risk of developing asthma?

    Winnicki, M. H., Dunn, R. R., Winther-Jensen, M., Jess, T., Allin, K. H. & Bruun, Hans Henrik, 2022, In: Science of the Total Environment. 850, 11 p., 157853.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Initiation of the Primate Genome Project

    Wu, D., Qi, X., Yu, L., Li, M., Liu, Z., Yoder, A. D., Roos, C., Hayakawa, T., Rogers, J., Marques-Bonet, T., Su, B., Yao, Y., Zhang, Y. & KU, thw266, 2022, In: Zoological research. 43, 2, p. 147-149 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  38. Published

    Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola

    You, J., Lougheed, S. C., Zhao, Y., KU, thw266, Liu, W., Lu, F., Wang, Y., Zhang, W., Yang, J., Qiong, L. & Song, Z., 2022, In: Annals of Botany. 129, 2, p. 185-200 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Morphometrics, Distribution, and DNA Barcoding: An Integrative Identification Approach to the Genus Odontotermes (Termitidae: Blattodea) of Khyber Pakhtunkhwa, Pakistan

    Zaman, M., Khan, I. A., Schmidt, Suzanne, Murphy, Rob & Poulsen, Michael, 2022, In: Forests. 13, 5, 17 p., 674.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Unparalleled details of soft tissues in a Cretaceous ant

    Zhuang, Y., Xu, W., KU, thw266, Mai, H., Li, X., He, H., Ran, H. & Liu, Y., 2022, In: BMC Ecology and Evolution. 22, 1, 10 p., 146.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Phylogenomic analysis and metabolic role reconstruction of mutualistic Rhizobiales hindgut symbionts of Acromyrmex leaf-cutting ants

    Zhukova, M., Sapountzis, P., Schiott, M. & Boomsma, Jacobus J., 2022, In: FEMS Microbiology Ecology. 98, 9, 13 p., fiac084.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Four new genera and six new species of lyophylloid agarics (Agaricales, Basidiomycota) from three different continents

    van de Peppel, L. J. J., Aime, M. C., Læssøe, Thomas, Pedersen, O. S., Coimbra, V. R. M., Kuyper, T. W., Stubbe, D., Aanen, D. K. & Baroni, T. J., 2022, In: Mycological Progress. 21, 10, 14 p., 85.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. 2021
  44. Published

    Hairs distinguish castes and sexes: identifying the early ontogenetic building blocks of a fungus-farming superorganism (Hymenoptera: Formicidae)

    Adams, R. M. M., Larsen, Rasmus Stenbak, Stylianidi, N., Cheung, D., Qiu, Bitao, Murray, S. K., KU, thw266 & Boomsma, Jacobus J., 2021, In: Myrmecological News. 31, p. 201-216 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    COVID-19 drug practices risk antimicrobial resistance evolution

    MetaSUB Consortium, M. C., 2021, In: The Lancet Microbe. 2, 4, p. e135-e136

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  46. Published

    Immune challenges increase network centrality in a queenless ant

    Alciatore, G., Ugelvig, Line Vej, Frank, E., Bidaux, J., Gal, A., Schmitt, T., Kronauer, D. J. C. & Ulrich, Y., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1958, 9 p., 20211456.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles

    Andreu-Sánchez, S., Chen, W., Stiller, Josefin & KU, thw266, 2021, In: GigaScience. 10, 1, 11 p., giaa161.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Diversity and Evolution of Entomocorticium (Russulales, Peniophoraceae), a Genus of Bark Beetle Mutualists Derived from Free-Living, Wood Rotting Peniophora

    Araújo, J. P. M., Li, Y., Six, D., Rajchenberg, M., Smith, M. E., Johnson, A. J., Klepzig, K. D., Crous, P. W., A. Leal-Dutra, Caio, Skelton, J., Adams, S. N. & Hulcr, J., 2021, In: Journal of Fungi. 7, 12, 26 p., 1043.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Metabolomics unveils the influence of dietary phytochemicals on residual pesticide concentrations in honey bees

    Ardalani, H., Vidkjær, Nanna Hjort, Kryger, P., Fiehn, O. & Fomsgaard, I. S., 2021, In: Environment International. 152, 10 p., 106503.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Isolation, characterization, and genome assembly of Barnettozyma botsteinii sp. nov. and novel strains of Kurtzmaniella quercitrusa isolated from the intestinal tract of the termite Macrotermes bellicosus

    Arrey Tané, Gerard, Li, G., Murphy, Rob, Guimaraes, L., Alizadeh, S., Poulsen, Michael & Regenberg, Birgitte, 2021, In: G3: Genes, Genomes, Genetics. 11, 12, 13 p., jkab342.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Juvenile hormone pathway in honey bee larvae: A source of possible signal molecules for the reproductive behavior of Varroa destructor

    Aurori, C. M., Giurgiu, A. I., Conlon, B. H., Kastally, C., Dezmirean, D. S., Routtu, J. & Aurori, A., 2021, In: Ecology and Evolution. 11, 2, p. 1057-1068 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Detecting bird’s eggs in the diet of raccoon dog (Nyctereutes procyonoides)

    Bahlke, S. Ø., Nash, David Richard, Pedersen, Jes Søe, Hansen, Mette Sif, Chriél, M. & Pagh, S., 2021, In: Genetics and Biodiversity Journal. 5, 2, p. 127-139 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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