Ecology and Evolution

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  1. Published

    Cloacal swabs and alcohol bird specimens are good proxies for compositional analyses of gut microbial communities of Great tits (Parus major)

    Bodawatta, Kasun Harshana, Puzejova, K., Sam, K., Poulsen, Michael & Jønsson, Knud Andreas, 2020, In: BMC Animal Microbiome. 2, 13 p., 9.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    ClockstaRX: testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

    Research output: Working paper › Preprint › Research

  3. Published

    ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Clonal yeast biofilms can reap competitive advantages through cell differentiation without being obligatorily multicellular

    Regenberg, Birgitte, Hanghøj, Kristian Ebbesen, Andersen, K. S. & Boomsma, Jacobus J., 2016, In: Royal Society of London. Proceedings B. Biological Sciences. 283, 1842, 8 p., 20161303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Co-evolution of enzyme function in the attine ant-fungus symbiosis

    de Fine Licht, Henrik Hjarvard, Schiøtt, M. & Boomsma, Jacobus J., 2008. 1 p.

    Research output: Contribution to conference › Poster › Research › peer-review

  6. Published

    Coefficient shifts in geographical ecology: an empirical evaluation of spatial and non-spatial regression

    Bini, L. M., Diniz-Filho, J. A. F., Rangel, T. F. L. V. B., Akre, T. S. B., Albaladejo, R. G., Albuquerque, F. S., Aparicio, A., Araújo, M. B., Baselga, A., Beck, J., Bellocq, M. I., Böhning-Gaese, K., Borges, P. A. V., Castro-Parga, I., Chey, V. K., Chown, S. L., Marco, P., Dobkin, D. S., Ferrer-Castán, D., Field, R. & 26 others, Filloy, J., Fleishman, E., Gómez, J. F., Hortal, J., Iverson, J. B., Kerr, J. T., Kissling, W. D., Kitching, I. J., León-Cortés, J. L., Lobo, J. M., Montoya, D., Morales-Castilla, I., Moreno, J. C., Oberdorff, T., Olalla-Tárraga, M. Á., Pausas, J. G., Qian, H., Rahbek, Carsten, Rodríguez, M. Á., Rueda, M., Ruggiero, A., Sackmann, P., Sanders, N. J., Terribile, L. C., Vetaas, O. R. & Hawkins, B. A., 2009, In: Ecography. 32, 2, p. 193-204

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Coevolved crypts and exocrine glands support mutualistic bacteria in fungus-growing ants

    Currie, C. R., Poulsen, Michael, Mendenhall, J., Boomsma, Jacobus J. & Billen, J., 2006, In: Science. 311, 5757, p. 81-83 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Coexistence of bisexual and unisexual populations of Nysius groenlandicus in the Zackenberg Valley, Northeast Greenland.

    Bøcher, J. J. & Nachman, Gøsta Støger, 2011, In: Entomologia Experimentalis et Applicata. 140, 3, p. 196-206 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Coexistence of structured populations with size-based prey selection

    Hartvig, M. & Andersen, K. H., 2013, In: Theoretical Population Biology. 89, p. 24-33 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. E-pub ahead of print

    Coexisting with carnivores: insights into local attitudes toward African wild dogs (Lycaon pictus) in the Maasai Mara, Kenya

    Cornu, L., Broekhuis, F., Kavwele, C. M., Mogensen, N., Sakat, D. & Briefer, Elodie, 2023, (E-pub ahead of print) In: Human Dimensions of Wildlife.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  11. Published

    Cognitive appraisal of aversive stimulus differs between individuals with contrasting stress coping styles; evidences from selected rainbow trout (Oncorhynchus mykiss) strains

    Moltesen, M. M., Vindas, M. A., Winberg, S., Ebbesson, L., de Lourdes Ruiz-Gomez, M., Skov, P. V., Dabelsteen, Torben, Øverli, Ø. & Höglund, E., 2016, In: Behaviour. 153, 13-14, p. 1567-1587 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Collecting the neclected kingdom: Guidelines for the field mycologist with emphasis on the larger fungi: Chapter 12.

    Buyck, B., Læssøe, Thomas, Meyer, M. & Hoffstetter, V., 2010, In: Abc Taxa. 8, p. 308-330

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Colonization of an empty island: how does a plant with a plastic gender system respond?

    Philipp, M. & Adsersen, Henning Emil, 2014, In: Biogeosciences. 11, p. 6657-6665 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Colonization of new land by arbuscular mycorrhizal fungi

    Nielsen, Knud Nor, Kjøller, Rasmus, Bruun, Hans Henrik, Schnoor, T. K. & Rosendahl, Søren, 2016, In: Fungal Ecology. 20, p. 22-29 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Colony fusion and worker reproduction after queen loss in army ants

    Kronauer, D. J. C., Schöning, C., d'Ettorre, P. & Boomsma, Jacobus J., 2010, In: Proceedings of the Royal Society of London. Biological Sciences. 277, 1682, p. 755-63 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Colony stage and not facultative policing explains pattern of worker reproduction in the Saxon wasp

    Bonckaert, W., van Zweden, J. S., D'Ettorre, P., Billen, J. & Wenseleers, T., 2011, In: Molecular Ecology. 20, 16, p. 3455–3468 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Combining projected changes in species richness and composition reveals climate change impacts on coastal Mediterranean fish assemblages

    Albouy, C., Guilhaumon, F., Bastos Araujo, M., Mouillot, D. & Leprieur, F., 2012, In: GCB Bioenergy. 18, 10, p. 2995-3003 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Commentary: Haldanes and trends in phenotypic change in humans

    Byars, Sean Geoffrey, 2013, In: International Journal of Epidemiology. 42, 1, p. 295-297 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  19. Published

    Commonalities and complementarities among approaches to conservation monitoring and evaluation

    Mascia, M. B., Pailler, S., Thieme, M. L., Rowe, A., Bottrill, M. C., Danielsen, F., Geldmann, Jonas, Naidoo, R., Pullin, A. S. & Burgess, Neil David, 2014, In: Biological Conservation. 169, p. 258-267 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Communication between hosts and social parasites

    Nash, David Richard & Boomsma, Jacobus J., 2008, Sociobiology of communication: an interdisciplinary perspective. d'Ettorre, P. & Hughes, D. P. (eds.). Oxford, UK: Oxford University Press, p. 55-79

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  21. Published

    Communication in social networks of territorial animals. Networking at different levels in birds and other systems

    Matessi, G., Matos, R. J. S. C. & Dabelsteen, Torben, 2008, Sociobiology of Communication: An interdisciplinary perspective. D'Ettorre, P. & Hughes, D. P. (eds.). Oxford, England: Oxford University Press, p. 53-54 21 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  22. Published

    Communities of wood-inhabiting bryophytes and fungi on dead beech logs in Europe - reflecting substrate quality or shaped by climate and forest conditions?

    Heilmann-Clausen, Jacob, Aude, E., van Dort, K., Christensen, M., Piltaver, A., Veerkamp, M., Walleyn, R., Siller, I., Standovar, T. & Ódor, P., 2014, In: Journal of Biogeography. 41, 12, p. 2269-2282 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Communities under climate change

    Nogues, David Bravo & Rahbek, Carsten, 2011, In: Science. 334, 6059, p. 1070-1 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Community assembly in experimental grasslands: suitable environment or timely arrival?

    Ejrnæs, R., Bruun, Hans Henrik & Graae, B. J., 2006, In: Ekologia. 87(5), p. 1225-1233

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Community dynamics of arbuscular mycorrhizal fungi in high-input and intensively irrigated rice cultivation systems

    Wang, Y., Li, T., Li, Y., Björn, L. O., Rosendahl, Søren, Olsson, P. A., Li, S. & Fu, X., 2015, In: Applied and Environmental Microbiology. 81, 8, p. 2958-2965 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Community monitoring for REDD+: international promises and field realities

    Danielsen, F., Adrian, T., Brofeldt, S., van Noordwijk, M., Poulsen, M. K., Rahayu, S., Rutishauser, E., Theilade, I., Widayati, A., An, N. T., Bang, T. N., Budiman, A., Enghoff, M., Jensen, A. E., Kurniawan, Y., Li, Q., Mingxu, Z., Schmidt-Vogt, D., Prixa, S., Thoumtone, V. & 2 others, Warta, Z. & Burgess, Neil David, 2013, In: Ecology and Society. 18, 3, 30 p., 41.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Community-level vs species-specific approaches to model selection

    Madon, B., Warton, D. I. & Bastos Araujo, M., 2013, In: Ecography. 36, 12, p. 1291-1298 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Comparable early-stage decomposition but contrasting underlying drivers between surface and cave habitats along an elevational gradient

    Bodawatta, Kasun Harshana, Ravn, N., Oromí, P., Esquivel, J. L. M., Michelsen, Anders, Poulsen, Michael, Jønsson, Knud Andreas & Reboleira, Ana Sofia, 2023, In: Ecological Indicators. 154, 12 p., 110607.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity

    Zhang, G., Cowled, C., Shi, Z., Huang, Z., Bishop-Lilly, K. A., Fang, X., Wynne, J. W., Xiong, Z., Baker, M. L., Zhao, W., Tachedjian, M., Zhu, Y., Zhou, P., Jiang, X., Ng, J., Yang, L., Wu, L., Xiao, J., Feng, Y., Chen, Y. & 8 others, Sun, X., Zhang, Y., Marsh, G. A., Crameri, G., Broder, C. C., Frey, K. G., Wang, L. & Wang, J., 2013, In: Science (New York, N.Y.). 339, 6118

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Comparative Genomic and Metabolic Analysis of Streptomyces sp. RB110 Morphotypes Illuminates Genomic Rearrangements and Formation of a New 46-Membered Antimicrobial Macrolide

    Um, S., Guo, H., Thiengmag, S., Benndorf, R., Murphy, Rob, Rischer, M., Braga, D., Poulsen, Michael, de Beer, Z. W., Lackner, G. & Beemelmanns, C., 2021, In: ACS chemical biology. 16, 8, p. 1482-1492

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Comparative Genomic and Metabolomic Analysis of Termitomyces Species Provides Insights into the Terpenome of the Fungal Cultivar and the Characteristic Odor of the Fungus Garden of Macrotermes natalensis Termites

    Kreuzenbeck, N. B., Seibel, E., Schwitalla, J. W., Fricke, J., Conlon, B. H., Schmidt, Suzanne, Hammerbacher, A., Köllner, T. G., Poulsen, Michael, Hoffmeister, D., Beemelmanns, C. & Pupo, M. T. (ed.), 2022, In: mSystems. 7, 1, 16 p., e01214-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Comparative Genomics Reveals Prophylactic and Catabolic Capabilities of Actinobacteria within the Fungus-Farming Termite Symbiosis

    Murphy, Rob, Benndorf, R., de Beer, Z. W., Vollmers, J., Kaster, A., Beemelmanns, C. & Poulsen, Michael, Mar 2021, In: mSphere. 6, 2, 12 p., e01233-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies

    Stiller, Josefin & KU, thw266, 2019, In: Diversity. 11, 7, 19 p., 115.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Comparative analyses of the digestive tract microbiota of New Guinean passerine birds

    Bodawatta, Kasun Harshana, Sam, K., Jønsson, Knud Andreas & Poulsen, Michael, 2018, In: Frontiers in Microbiology. 9, 13 p., 1830.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Comparative bioacoustics: a roadmap for quantifying and comparing animal sounds across diverse taxa

    Odom, K. J., Araya-Salas, M., Morano, J. L., Ligon, R. A., Leighton, G. M., Taff, C. C., Dalziell, A. H., Billings, A. C., Germain, Ryan Ross, Pardo, M., de Andrade, L. G., Hedwig, D., Keen, S. C., Shiu, Y., Charif, R. A., Webster, M. S. & Rice, A. N., 2021, In: Biological Reviews. 96, 4, p. 1135-1159 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Comparative genomic data of the Avian Phylogenomics Project

    KU, thw266, Li, B., Li, C., Gilbert, M Thomas P, Jarvis, E. D., Wang, J. & Avian Genome Consortium, A. G. C., 2014, In: GigaScience. 3, 8 p., 26.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Comparative genomics reveals insights into avian genome evolution and adaptation

    Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 85 others, Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., Rodrigues da Fonseca, Rute Andreia, Alfaro Nuñez, L. A., Schubert, Mikkel, Orlando, L. A. A., Mourier, T., Howard, J. T., Ganapathy, G., Pfenning, A., Whitney, O., Rivas, M. V., Hara, E., Smith, J., Farré, M., Narayan, J., Slavov, G., Romanov, M. N., Borges, R., MacHado, J. P., Khan, I., Springer, M. S., Gatesy, J., Hoffmann, F. G., Opazo, J. C., Håstad, O., Sawyer, R. H., Kim, H., Kim, K. W., Kim, H. J., Cho, S., Li, N., Huang, Y., Bruford, M. W., Zhan, X., Dixon, A., Bertelsen, Mads Frost, Derryberry, E., Warren, W., Wilson, R. K., Li, S., Ray, D. A., Green, R. E., O'Brien, S. J., Griffin, D., Johnson, W. E., Haussler, D., Ryder, O. A., Willerslev, Eske, Graves, G. R., Alström, P., Fjeldså, Jon, Mindell, D. P., Edwards, S. V., Braun, E. L., Rahbek, Carsten, Burt, D. W., Houde, P., Zhang, Y., Yang, H., Wang, J., Jarvis, E. D., Gilbert, M Thomas P & Wang, J., 2014, In: Science. 346, 6215, p. 1311-1320 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Comparative genomics reveals the hybrid origin of a macaque group

    Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L., Marques-Bonet, T. & 10 others, Roos, C., Qi, X. G., Li, M., Liu, Z., Schierup, M. H., Cooper, D. N., Liu, J., Zheng, Y. T., KU, thw266 & Wu, D. D., 2023, In: Science Advances. 9, 22, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Comparative home range size and habitat selection in provisioned and non-provisioned long-tailed macaques (Macaca fascicularis) in Baluran National Park, East Java, Indonesia

    Hansen, Malene Friis, Ellegaard, S., Moeller, M. M., van Beest, F. M., Fuentes, A., Nawangsari, V. A., Groendahl, C., Frederiksen, M. L., Stelvig, M., Schmidt, N. M., Traeholt, C. & Dabelsteen, Torben, 2020, In: Contributions to Zoology. 89, 4, p. 393-411 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Comparative investigation of copper tolerance and identification of putative tolerance related genes in tardigrades

    Hygum, T. L., Fobian, D., Kamilari, M., Jørgensen, Aslak, Schiøtt, M., Grosell, M. & Møbjerg, Nadja, 2017, In: Frontiers in Physiology. 8, 10 p., 95.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

    Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola

    You, J., Lougheed, S. C., Zhao, Y., KU, thw266, Liu, W., Lu, F., Wang, Y., Zhang, W., Yang, J., Qiong, L. & Song, Z., 2022, In: Annals of Botany. 129, 2, p. 185-200 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Comparative study on pattern recognition receptors in non-teleost ray-finned fishes and their evolutionary significance in primitive vertebrates

    He, Y., Pan, H., KU, thw266 & He, S., 2019, In: Science China Life Sciences. 62, 4, p. 566-578

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants

    Morandin, C., Tin, M. M. Y., Abril, S., Gomez, C., Pontieri, L., Schiøtt, M., Sundstrom, L., Tsuji, K., Pedersen, Jes Søe, Helantera, H. & Mikheyev, A. S., 2016, In: Genome Biology (Online). 17, 19 p., 43 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Comparative transcriptomics suggest unique molecular adaptations within tardigrade lineages

    Kamilari, M., Jørgensen, Aslak, Schiøtt, M. & Møbjerg, Nadja, 2019, In: B M C Genomics. 20, 19 p., 607.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Comparing diversity data collected using a protocol designed for volunteers with results from a professional alternative

    Holt, B. G., Rioja-Nieto, R., MacNeil, M. A., Lupton, J. & Rahbek, Carsten, 2013, In: Methods in Ecology and Evolution. 4, 4, p. 383-392 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities

    Aylward, F. O., McDonald, B. R., Adams, S. M., Valenzuela, A., Schmidt, R. A., Goodwin, L. A., Woyke, T., Currie, C. R., Suen, G. & Poulsen, Michael, 2013, In: Applied and Environmental Microbiology. 79, 12, p. 3724-3733 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Comparison of Twelve Ant Species and Their Susceptibility to Fungal Infection

    Bos, N., Kankaanpää-Kukkonen, V., Freitak, D., Stucki, D. & Sundström, L., 2019, In: Insects. 10, 9, 14 p., 271.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Competition-based screening helps to secure the evolutionary stability of a defensive microbiome

    Worsley, S. F., Innocent, T. M., Holmes, N. A., Al-Bassam, M. M., Schiøtt, M., Wilkinson, B., Murrell, J. C., Boomsma, Jacobus J., Yu, D. W. & Hutchings, M. I., 2021, In: BMC Biology. 19, 20 p., 205.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Complementary symbiont contributions to plant decomposition in a fungus-farming termite

    Thomas-Poulsen, M., Hu, H., Li, C., Chen, Z., Xu, L., Otani, S., Nygaard, S., Nobre, T., Klaubauf, S., Schindler, P. M., Hauser, F., Pan, H., Yang, Z., Sonnenberg, A. S. M., de Beer, Z. W., Zhang, Y., Wingfield, M. J., Grimmelikhuijzen, C., de Vries, R. P., Korb, J. & 4 others, Aanen, D. K., Wang, J., Boomsma, Jacobus J. & KU, thw266, 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 40, 6 p., 14500-14505.

    Research output: Contribution to journal › Journal article › Research › peer-review

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