Ecology and Evolution

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  1. 2022
  2. Published

    A database of the morphology, ecology and literature of the world's limb‐reduced skinks

    Camaiti, M., Evans, A. R., Hipsley, Christy Anna, Hutchinson, M. N., Meiri, S., Anderson, R. O., Slavenko, A. & Chapple, D. G., 2022, In: Journal of Biogeography. 49, 7, p. 1397-1406 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A fungal symbiont converts provisioned cellulose into edible yield for its leafcutter ant farmers

    Conlon, B. H., O'Tuama, D., Michelsen, Anders, Crumière, A. J. J. & Shik, Jonathan Z., 2022, In: Biology Letters. 18, 4, 6 p., 20220022.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

    Toh, H., Yang, C., Formenti, G., Raja, K., Yan, L., Tracey, A., Chow, W., Howe, K., Bergeron, L. A., Zhang, G., Haase, B., Mountcastle, J., Fedrigo, O., Fogg, J., Kirilenko, B., Munegowda, C., Hiller, M., Jain, A., Kihara, D., Rhie, A. & 9 others, Phillippy, A. M., Swanson, S. A., Jiang, P., Clegg, D. O., Jarvis, E. D., Thomson, J. A., Stewart, R., Chaisson, M. J. P. & Bukhman, Y. V., 2022, In: BMC Biology. 20, 21 p., 245.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A high-quality genome assembly and annotation of the dark-eyed junco Junco hyemalis, a recently diversified songbird

    Friis, G., Vizueta Moraga, Joel, Ketterson, E. D. & Milá, B., 2022, In: G3: Genes, Genomes, Genetics. 12, 6, 6 p., jkac083.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    A history of the MetaSUB consortium: Tracking urban microbes around the globe

    Ryon, K. A., Tierney, B. T., Frolova, A., Kahles, A., Desnues, C., Ouzounis, C., Gibas, C., Bezdan, D., Deng, Y., He, D., Dias-Neto, E., Elhaik, E., Afshin, E., Grills, G., Iraola, G., Suzuki, H., Werner, J., Udekwu, K., Schriml, L., Bhattacharyya, M. & 14 others, Oliveira, M., Zambrano, M. M., Hazrin-Chong, N. H., Osuolale, O., Łabaj, P. P., Tiasse, P., Rapuri, S., Borras, S., Pozdniakova, S., Shi, T., Sezerman, U., Rodo, X., Sezer, Z. H. & Mason, C. E., 2022, In: iScience. 25, 11, 12 p., 104993.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  7. Published

    A single-cell transcriptomic atlas tracking the neural basis of division of labour in an ant superorganism

    Li, Q., Wang, M., Zhang, P., Liu, Y., Guo, Q., Zhu, Y., Wen, T., Dai, X., Zhang, X., Nagel, M., Dethlefsen, B. H., Xie, N., Zhao, J., Jiang, W., Han, L., Wu, L., Zhong, W., Wang, Z., Wei, X., Dai, W. & 9 others, Liu, L., Xu, X., Lu, H., Yang, H., Wang, J., Boomsma, Jacobus J., Liu, C., KU, thw266 & Liu, W., 2022, In: Nature Ecology & Evolution. 6, 8, p. 1191-1204

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A unifying model for extrachromosomal circular DNA load in eukaryotic cells

    Arrey Tané, Gerard, Keating, S. T. & Regenberg, Birgitte, 2022, In: Seminars in Cell and Developmental Biology. 128, p. 40-50 11 p.

    Research output: Contribution to journal › Review › Research › peer-review

  9. Published

    Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors

    Fiddaman, S. R., Vinkler, M., Spiro, S. G., Levy, H., Emerling, C. A., Boyd, A. C., Dimopoulos, E. A., Vianna, J. A., Cole, T. L., Pan, H., Fang, M., KU, thw266, Hart, T., Frantz, L. A. F. & Smith, A. L., 2022, In: Molecular Biology and Evolution. 39, 1, 17 p., msab354.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Age, empathy, familiarity, domestication and call features enhance human perception of animal emotion expressions

    Greenall, J. S., Cornu, L., Maigrot, A. L., de la Torre, Mónica Padilla & Briefer, Elodie, 2022, In: Royal Society Open Science. 9, 12, 16 p., 221138.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Ancient proteins resolve controversy over the identity of Genyornis eggshell

    Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Arbuscular mycorrhizal fungal communities of pristine rainforests and adjacent sugarcane fields recruit from different species pools

    Pereira, C. M. R., López-García, Á., Maia, L. C., Frøslev, Tobias Guldberg, Kjøller, Rasmus & Rosendahl, Søren, 2022, In: Soil Biology and Biochemistry. 167, 9 p., 108585.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Avian gut microbiomes taking flight

    Bodawatta, Kasun Harshana, Hird, S. M., Grond, K., Poulsen, Michael & Jønsson, Knud Andreas, 2022, In: Trends in Microbiology. 30, 3, p. 268-280 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences

    Wanchai, V., Jenjaroenpun, P., Leangapichart, T., Arrey Tané, Gerard, Burnham, C. M., Tümmler, M. C., Delgado-Calle, J., Regenberg, Birgitte & Nookaew, I., 2022, In: Briefings in Bioinformatics. 23, 6, 11 p., bbac422.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Canalized gene expression during development mediates caste differentiation in ants

    Qiu, Bitao, Dai, X., Li, P., Larsen, Rasmus Stenbak, Li, Ruyan, Price, A. L., Ding, G., Texada, Michael James, Zhang, X., Zuo, D., Gao, Q., Jiang, W., Wen, T., Pontieri, L., Guo, C., Rewitz, Kim, Li, Q., Liu, W., Boomsma, Jacobus J. & KU, thw266, 2022, In: Nature Ecology and Evolution. 6, 11, p. 1753-1765

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Candidemia among Hospitalized Pediatric Patients Caused by Several Clonal Lineages of Candida parapsilosis

    Hare, R. K., Arastehfar, A., Rosendahl, Søren, Charsizadeh, A., Daneshnia, F., Eshaghi, H., Mirhendi, H., Boekhout, T., Hagen, F. & Arendrup, Maiken Cavling, 2022, In: Journal of Fungi. 8, 2, 11 p., 183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Changes in the foliar fungal community between oak leaf flushes along a latitudinal gradient in Europe

    Gaytán, Á., Abdelfattah, A., Faticov, M., Moreira, X., Castagneyrol, B., Van Halder, I., De Frenne, P., Meeussen, C., Timmermans, B. G. H., Ten Hoopen, J. P. J. G., Rasmussen, P. U., Bos, N., Jaatinen, R., Pulkkinen, P., Söderlund, S., Gotthard, K., Pawlowski, K. & Tack, A. J. M., 2022, In: Journal of Biogeography. 49, 12, 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs

    Lv, W., Pan, X., Han, P., Wang, Z., Feng, W., Xing, X., Wang, Q., Qu, K., Zeng, Y., Zhang, C., Xu, Z., Li, Y., Zheng, T., Lin, L., Liu, C., Liu, X., Li, H., Henriksen, R. A., Bolund, L., Lin, L. & 7 others, Jin, X., Yang, H., Zhang, X., Yin, T., Regenberg, Birgitte, He, F. & Luo, Y., 2022, In: Clinical and Translational Medicine. 12, 4, 16 p., e817.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Circular DNA in the human germline and its association with recombination

    Henriksen, Rasmus Henrik Amund, Jenjaroenpun, P., Sjøstrøm, I. B., Jensen, Kristian HR, Prada Luengo, Inigo, Wongsurawat, T., Nookaew, I. & Regenberg, Birgitte, 2022, In: Molecular Cell. 82, 1, p. 209-217.e7

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Classification of pig calls produced from birth to slaughter according to their emotional valence and context of production: [Inkl. correction]

    Briefer, Elodie, Sypherd, C. C., Linhart, P., Leliveld, L. M. C., de la Torre, M. P., Read, E. R., Guérin, C., Deiss, V., Monestier, C., Rasmussen, J. H., Špinka, M., Düpjan, S., Boissy, A., Janczak, A. M., Hillmann, E. & Tallet, C., 2022, In: Scientific Reports. 12, 10 p., 3409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Comparative Genomic and Metabolomic Analysis of Termitomyces Species Provides Insights into the Terpenome of the Fungal Cultivar and the Characteristic Odor of the Fungus Garden of Macrotermes natalensis Termites

    Kreuzenbeck, N. B., Seibel, E., Schwitalla, J. W., Fricke, J., Conlon, B. H., Schmidt, Suzanne, Hammerbacher, A., Köllner, T. G., Poulsen, Michael, Hoffmeister, D., Beemelmanns, C. & Pupo, M. T. (ed.), 2022, In: mSystems. 7, 1, 16 p., e01214-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola

    You, J., Lougheed, S. C., Zhao, Y., KU, thw266, Liu, W., Lu, F., Wang, Y., Zhang, W., Yang, J., Qiong, L. & Song, Z., 2022, In: Annals of Botany. 129, 2, p. 185-200 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

    Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 p.

    Research output: Working paper › Preprint › Research

  24. Published

    Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird

    Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Convergent genomic signals of tail length reduction in multiple macaque lineages

    DENG, Y., 2022, Section for Ecology and Evolution, Department of Biology, University of Copenhagen. 164 p.

    Research output: Book/Report › Ph.D. thesis › Research

  26. Published

    Cross-species discrimination of vocal expression of emotional valence by Equidae and Suidae

    Maigrot, A., Hillmann, E. & Briefer, Elodie, 2022, In: BMC Biology. 20, 14 p., 106.

    Research output: Contribution to journal › Journal article › Research › peer-review

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