Ecology and Evolution

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  1. 2022
  2. Published

    Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird

    Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Convergent genomic signals of tail length reduction in multiple macaque lineages

    DENG, Y., 2022, Section for Ecology and Evolution, Department of Biology, University of Copenhagen. 164 p.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Cross-species discrimination of vocal expression of emotional valence by Equidae and Suidae

    Maigrot, A., Hillmann, E. & Briefer, Elodie, 2022, In: BMC Biology. 20, 14 p., 106.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    De novo transcriptome sequencing of the northern fowl mite, Ornithonyssus sylviarum, shed light on parasitiform poultry mites evolution and its chemoreceptor repertoires

    Bhowmick, B., Chen, H., Lozano-Fernandez, J., Vizueta Moraga, Joel, Ignell, R. & Han, Q., 2022, In: Parasitology Research. 121, 2, p. 521-535 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Does childhood exposure to biodiverse greenspace reduce the risk of developing asthma?

    Winnicki, M. H., Dunn, R. R., Winther-Jensen, M., Jess, T., Allin, K. H. & Bruun, Hans Henrik, 2022, In: Science of the Total Environment. 850, 11 p., 157853.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Domains and Major Transitions of Social Evolution

    Boomsma, Jacobus J., 2022, Oxford University Press. 296 p.

    Research output: Book/Report › Book › Research › peer-review

  8. Published

    Draft genome assemblies of four manakins

    Li, X., Gao, R., Chen, G., Price, A. L., Øksnebjerg, Daniel Bilyeli, Hosner, Peter Andrew, Zhou, Y., KU, thw266 & Feng, S., 2022, In: Scientific Data. 9, 11 p., 564.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Ecological adaptation and birdsong: how body and bill sizes affect passerine sound frequencies

    Friis, J. I., Sabino, J., Santos, P., Dabelsteen, Torben & Cardoso, G. C., 2022, In: Behavioral Ecology. 33, 4, p. 798-806 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

    Wang, F., Ding, P., Liang, X., Ding, X., Brandt, C. B., Sjöstedt, E., Zhu, J., Bolund, S., Zhang, L., de Rooij, L. P. M. H., Luo, L., Wei, Y., Zhao, W., Lv, Z., Haskó, J., Li, R., Qin, Q., Jia, Y., Wu, W., Yuan, Y. & 25 others, Pu, M., Wang, H., Wu, A., Xie, L., Liu, P., Chen, F., Herold, J., Kalucka, J., Karlsson, M., Zhang, X., Helmig, R. B., Fagerberg, L., Lindskog, C., Pontén, F., Uhlen, M., Bolund, L., Jessen, N., Jiang, H., Xu, X., Yang, H., Carmeliet, P., Mulder, J., Chen, D., Lin, L. & Luo, Y., 2022, In: Nature Communications. 13, 18 p., 3620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases

    Mohammadi, S., Özdemir, H. İ., Ozbek, P., Sumbul, F., Stiller, Josefin, Deng, Y., Crawford, A. J., Rowland, H., Storz, J., Andolfatto, P. & Dobler, S., 2022, In: Molecular Biology and Evolution. 39, 12, 13 p., msac258.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Estimating intrinsic growth rates of arthropods from partial life tables using predatory mites as examples

    Janssen, A., Fonseca, M. M., Marcossi, I., Kalile, M. O., Cardoso, A. C., Walerius, A. H., Hanel, A., Marques, V., Ferla, J. J., Farias, V., Carbajal, P. A. F., Pallini, A. & Nachman, Gøsta Støger, 2022, In: Experimental and Applied Acarology. 86, 3, p. 327-342 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  13. Published

    Extrachromosomal circular DNA in cancer: history, current knowledge, and methods

    Noer, Julie Boertmann, Hørsdal, O. K., Xiang, X., Luo, Y. & Regenberg, Birgitte, 2022, In: Trends in Genetics. 38, 7, p. 766-781 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription: [Corrigendum]

    Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Neves, R. C., Jørgensen, Aslak, Schiøtt, M., Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 271, 8 p., 111245.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Fagligt grundlag for naturløfter for Friland oksekød

    Ejrnæs, R. & Bruun, Hans Henrik, 2022, Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi. 17 p. (Fagligt notat fra DCE – Nationalt Center for Miljø og Energi, Vol. 21).

    Research output: Book/Report › Report › Commissioned

  16. Published

    False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

    Kim, J., Lee, C., Ko, B. J., Yoo, D. A., Won, S., Phillippy, A. M., Fedrigo, O., KU, thw266, Howe, K., Wood, J., Durbin, R., Formenti, G., Brown, S., Cantin, L., Mello, C. V., Cho, S., Rhie, A., Kim, H. & Jarvis, E. D., 2022, In: Genome Biology. 23, 29 p., 204.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Foreword

    Gawne, R. & Boomsma, Jacobus J., 2022, The Individual in the Animal Kingdom. MIT Press, 32 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  18. Published

    Four new genera and six new species of lyophylloid agarics (Agaricales, Basidiomycota) from three different continents

    van de Peppel, L. J. J., Aime, M. C., Læssøe, Thomas, Pedersen, O. S., Coimbra, V. R. M., Kuyper, T. W., Stubbe, D., Aanen, D. K. & Baroni, T. J., 2022, In: Mycological Progress. 21, 10, 14 p., 85.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Functional Diversity and Evolution of Bitter Taste Receptors in Egg-Laying Mammals

    Itoigawa, A., Hayakawa, T., Zhou, Y., Manning, A. D., KU, thw266, Grutzner, F. & Imai, H., 2022, In: Molecular Biology and Evolution. 39, 6, 9 p., msac107.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Functional genomics analysis reveals the evolutionary adaptation and demographic history of pygmy lorises

    Li, M. L., Wang, S., Xu, P., Tian, H. Y., Bai, M., Zhang, Y. P., Shao, Y., Xiong, Z. J., Qi, X. G., Cooper, D. N., KU, thw266, Zhu, H. H. & Wu, D. D., 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 40, 10 p., e2123030119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Genomic insights into the secondary aquatic transition of penguins

    Cole, T. L., Zhou, C., Fang, M., Pan, H., Ksepka, D. T., Fiddaman, S. R., Emerling, C. A., Thomas, D. B., Bi, X., Fang, Q., Ellegaard, M. R., Feng, S., Smith, A. L., Heath, T. A., Tennyson, A. J. D., Borboroglu, P. G., Wood, J. R., Hadden, P. W., Grosser, S., Bost, C. A. & 20 others, Cherel, Y., Mattern, T., Hart, T., Sinding, Mikkel Holger Strander, Shepherd, L. D., Phillips, R. A., Quillfeldt, P., Masello, J. F., Bouzat, J. L., Ryan, P. G., Thompson, D. R., Ellenberg, U., Dann, P., Miller, G., Dee Boersma, P., Zhao, R., Gilbert, M Thomas P, Yang, H., Zhang, D. & KU, thw266, 2022, In: Nature Communications. 13, 13 p., 3912.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Goat kid recognition of their mothers' calls is not impacted by changes in fundamental frequency or formants

    Perroux, T. A., McElligott, A. G. & Briefer, Elodie, 2022, In: Journal of Zoology. 318, 4, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Grand Challenges in Coevolution

    Medina, M., Baker, D. M., Baltrus, D. A., Bennett, G. M., Cardini, U., Correa, A. M. S., Degnan, S. M., Christa, G., Kim, E., Li, J., Nash, David Richard, Marzinelli, E., Nishiguchi, M., Prada, C., Roth, M. S., Saha, M., Smith, C. I., Theis, K. R. & Zaneveld, J., 2022, In: Frontiers in Ecology and Evolution. 9, 11 p., 618251.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Heat waves affect prey and predators differently via developmental plasticity: who may benefit most from global warming?

    Tscholl, T., Nachman, Gøsta Støger, Spangl, B. & Walzer, A., 2022, In: Pest Management Science. 78, 3, p. 1099-1108 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Herpetofaunal diversity changes with climate: evidence from the Quaternary of McEachern’s Deathtrap Cave, southeastern Australia

    Ramm, T., Thorn, K. M., Hipsley, Christy Anna, Müller, J., Hocknull, S. & Melville, J., 2022, In: Journal of Vertebrate Paleontology. 41, 5, 23 p., e2009844.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    High exposure of global tree diversity to human pressure

    Guo, W-Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., de Frutos, A., Dias, A. S., Giroldo, A. B. & 37 others, Guo, K., Gutiérrez, A. G., Hattingh, W., He, T., Hietz, P., Hough-Snee, N., Jansen, S., Kattge, J., Klein, T., Komac, B., Kraft, N. J. B., Kramer, K., Lavorel, S., Lusk, C. H., Martin, A. R., Mencuccini, M., Michaletz, S. T., Minden, V., Mori, A. S., Niinemets, Ü., Onoda, Y., Peñuelas, J., Pillar, V. D., Pisek, J., Robroek, B. J. M., Schamp, B., Slot, M., Sosinski, Ê. E., Soudzilovskaia, N. A., Thiffault, N., van Bodegom, P., van der Plas, F., Wright, I. J., Xu, W., Zheng, J., Enquist, B. J. & Svenning, J., 2022, In: PNAS. 119, 25, 11 p., e2026733119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    High-speed chases along the seafloor put Bryde's whales at risk of entanglement

    Segre, P. S., drf168, drf168, Kahane-Rapport, S. R., Gough, W. T., Meÿer, M. A., Lombard, A. T., Goldbogen, J. A. & Penry, G. S., 2022, In: Conservation Science and Practice. 4, 5, 9 p., e12646.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Immersive virtual reality in STEM: is IVR an effective learning medium and does adding self-explanation after a lesson improve learning outcomes?

    Elme, L., Jørgensen, M. L. M., Dandanell, Gert, Mottelson, A. & Makransky, Guido, 2022, In: Educational Technology Research and Development. 70, 5, p. 1601-1626 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Immune modulatory effects of progesterone on oxLDL-induced trained immunity in monocytes

    Groh, L. A., Verel, D. E., van der Heijden, C. D. C. C., Matzaraki, V., Moorlag, S. J. C. F. M., de Bree, L. C., Koeken, V. A. C. M., Mourits, V. P., Keating, S. T., van Puffelen, J. H., Joosten, L. A. B., Netea, M. G. & Riksen, N. P., 2022, In: Journal of Leukocyte Biology. 112, 2, p. 279-288 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Impact of the COVID-19 Pandemic on Primate Research and Conservation

    Reuter, K. E., Andriantsaralaza, S., Hansen, Malene Friis, Lafleur, M., Jerusalinsky, L., Louis, E. E., Ratzimbazafy, J., Williamson, E. A. & Mittermeier, R. A., 2022, In: Animals. 12, 9, 18 p., 1214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Incomplete lineage sorting and phenotypic evolution in marsupials

    Feng, S., Bai, M., Rivas-González, I., Li, C., Liu, S., Tong, Y., Yang, H., Chen, G., Xie, D., Sears, K. E., Franco, L. M., Gaitan-Espitia, J. D., Nespolo, R. F., Johnson, W. E., Yang, H., Brandies, P. A., Hogg, C. J., Belov, K., Renfree, M. B., Helgen, K. M. & 3 others, Boomsma, Jacobus J., Schierup, M. H. & KU, thw266, 2022, In: Cell. 185, 10, p. 1646-1660.e18

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Independent evolution of intermediate bill widths in a seabird clade

    Masello, J. F., Ryan, P. G., Shepherd, L. D., Quillfeldt, P., Cherel, Y., Tennyson, A. J. D., Alderman, R., Calderón, L., Cole, T. L., Cuthbert, R. J., Dilley, B. J., Massaro, M., Miskelly, C. M., Navarro, J., Phillips, R. A., Weimerskirch, H. & Moodley, Y., 2022, In: Molecular Genetics and Genomics. 297, 1, p. 183-198 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Initiation of the Primate Genome Project

    Wu, D., Qi, X., Yu, L., Li, M., Liu, Z., Yoder, A. D., Roos, C., Hayakawa, T., Rogers, J., Marques-Bonet, T., Su, B., Yao, Y., Zhang, Y. & KU, thw266, 2022, In: Zoological research. 43, 2, p. 147-149 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  34. Published

    Insights into the Metabolomic Capacity of Podaxis and Isolation of Podaxisterols A-D, Ergosterol Derivatives Carrying Nitrosyl Cyanide-Derived Modifications

    Guo, H., Daniel, J. M., Seibel, E., Burkhardt, I., Conlon, B. H., Görls, H., Vassão, D. G., Dickschat, J. S., Poulsen, Michael & Beemelmanns, C., 2022, In: Journal of Natural Products. 85, 9, p. 2159-2167

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Kortlægning af lavbundsjord til naturgenopretning

    Fløjgaard, C., Johansen, O. M., Andersen, D. K., Brunbjerg, A. K., Bruun, Hans Henrik, Groom, G. & Ejrnæs, R., 2022, In: Vand & Jord. 29, 2, p. 58-61 4 p.

    Research output: Contribution to journal › Journal article › Research

  36. Published

    Lifetime Commitment between Social Insect Families and Their Fungal Cultivars Complicates Comparisons with Human Farming

    Boomsma, Jacobus J., 2022, The Convergent Evolution of Agriculture in Humans and Insects. Schultz, T. R., Gawne, R. & Peregrine, P. N. (eds.). MIT Press, 13 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  37. Published

    Male ant reproductive investment in a seasonal wet tropical forest: Consequences of future climate change

    Donoso, D. A., Basset, Y., Shik, Jonathan Z., Forrister, D. L., Uquillas, A., Salazar-Méndez, Y., Arizala, S., Polanco, P., Beckett, S., Diego Dominguez, G. & Barrios, H., 2022, In: PLoS ONE. 17, 3 , 13 p., e0266222.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Massively targeted evaluation of therapeutic CRISPR off-targets in cells

    Pan, X., Qu, K., Yuan, H., Xiang, X., Anthon, C., Pashkova, L., Liang, X., Han, P., Corsi, G. I., Xu, F., Liu, P., Zhong, J., Zhou, Y., Ma, T., Jiang, H., Liu, J., Wang, J., Jessen, N., Bolund, L., Yang, H. & 5 others, Xu, X., Church, G. M., Gorodkin, Jan, Lin, L. & Luo, Y., 2022, In: Nature Communications. 13, 14 p., 4049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Monetary Value of Live Trade in a Commonly Traded Primate, the Long-Tailed Macaque, Based on Global Trade Statistics

    Hansen, Malene Friis, Gill, M., Briefer, Elodie, R. K. Nielsen, D. & Nijman, V., 2022, In: Frontiers in Conservation Science. 3, 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Morphometrics, Distribution, and DNA Barcoding: An Integrative Identification Approach to the Genus Odontotermes (Termitidae: Blattodea) of Khyber Pakhtunkhwa, Pakistan

    Zaman, M., Khan, I. A., Schmidt, Suzanne, Murphy, Rob & Poulsen, Michael, 2022, In: Forests. 13, 5, 17 p., 674.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Nibble, cut, stomp and burn: Biodiversity effects of disturbances in fen grassland

    Fløjgaard, C., Brunbjerg, A. K., Andersen, D. K., Dalby, L., Lehmann, L. J., Bruun, Hans Henrik & Ejrnæs, R., 2022, In: Applied Vegetation Science. 25, 2, 13 p., e12666.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Nutrient-limited subarctic caves harbour more diverse and complex bacterial communities than their surface soil

    Reboleira, Ana Sofia, Bodawatta, Kasun Harshana, Ravn, N. M. R., Lauritzen, S., Skoglund, R. Ø., Poulsen, Michael, Michelsen, Anders & Jønsson, Knud Andreas, 2022, In: Environmental Microbiomes. 17, 17 p., 41.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Nutritional challenges of feeding a mutualist: Testing for a nutrient–toxin tradeoff in fungus-farming leafcutter ants

    Crumière, A. J. J., Mallett, S., Michelsen, Anders, Rinnan, Riikka & Shik, Jonathan Z., 2022, In: Ecology. 103, 6, 12 p., e3684.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Nyt fra Svampeatlas

    Heilmann-Clausen, Jacob, Læssøe, Thomas, Frøslev, Tobias Guldberg, Petersen, J. H., Jeppesen, T. S. & Søchting, Ulrik, 2022, In: Svampe. 85, p. 19-27

    Research output: Contribution to journal › Journal article › Communication

  45. Published

    Ontogenetic allometry underlies trophic diversity in sea turtles (Chelonioidea)

    Chatterji, R. M., Hipsley, Christy Anna, Sherratt, E., Hutchinson, M. N. & Jones, M. E. H., 2022, In: Evolutionary Ecology. 36, 4, p. 511-540 30 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Origin and Deep Evolution of Human Endogenous Retroviruses in Pan-Primates

    Li, Y., KU, thw266 & Cui, J., 2022, In: Viruses. 14, 7, 14 p., 1370.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Orthogonal protocols for DNA extraction from filamentous fungi

    Conlon, B. H., Schmidt, Suzanne, Poulsen, Michael & Shik, Jonathan Z., 2022, In: STAR Protocols. 3, 1, 10 p., 101126.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds

    Ji, Y., Feng, S., Wu, L., Fang, Q., Brüniche-Olsen, Anna, DeWoody, J. A., Cheng, Y., Zhang, D., Hao, Y., Song, G., Qu, Y., Suh, A., KU, thw266, Hackett, S. J. & Lei, F., 2022, In: Science Advances. 8, 35, 11 p., eabo0099.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Phylogenomic analyses of mud dragons (Kinorhyncha)

    Herranz, Maria, Stiller, Josefin, Worsaae, Katrine & Sørensen, Martin Vinther, 2022, In: Molecular Phylogenetics and Evolution. 168, 10 p., 107375.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation

    Li, F., Rane, R. V., Luria, V., Xiong, Z., Chen, J., Li, Z., Catullo, R. A., Griffin, P. C., Schiffer, M., Pearce, S., Lee, S. F., McElroy, K., Stocker, A., Shirriffs, J., Cockerell, F., Coppin, C., Sgrò, C. M., Karger, A., Cain, J. W., Weber, J. A. & 5 others, Santpere, G., Kirschner, M. W., Hoffmann, A. A., Oakeshott, J. G. & KU, thw266, 2022, In: Molecular Ecology Resources. 22, 4, p. 1559-1581 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Phylogenomic analysis and metabolic role reconstruction of mutualistic Rhizobiales hindgut symbionts of Acromyrmex leaf-cutting ants

    Zhukova, M., Sapountzis, P., Schiott, M. & Boomsma, Jacobus J., 2022, In: FEMS Microbiology Ecology. 98, 9, 13 p., fiac084.

    Research output: Contribution to journal › Journal article › Research › peer-review

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