Department of Biology

 

 
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  1. Published

    Helminths of small rodents in Denmark

    Tenora, F., Andreassen, J. & Hindsbo, O., 1991, In: Helminthologia. Vol. 28, p. 151-154

    Research output: Contribution to journal › Journal article › Research

  2. Published

    Spatial genetic patterns in African wild dogs reveal signs of effective dispersal across southern Africa

    Tensen, L., Jansen van Vuuren, B., Groom, R., Bertola, Laura, de Iongh, H., Rasmussen, G., Du Plessis, C., Davies-Mostert, H., van der Merwe, D., Fabiano, E., Lages, F., Rocha, F., Monterroso, P. & Godinho, R., 2022, In: Frontiers in Ecology and Evolution. 10, 12 p., 992389.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Mitogenomic Characterization of South African Leopards and the Effect of Past Climatic Events

    Tensen, Laura Nicole, Emami-Khoyi, A., Khan, Anubhab, Camacho, G., Swanepoel, L. & Fischer, K., 2024, In: Journal of Zoological Systematics and Evolutionary Research. 2024, 14 p., 2174469.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implicatons for experimantal design

    Terenius, O., Papanicolaou, A., Garbutt, J. S., Albrechtsen, M. T., Grimmelikhuijzen, Cornelis (Cok), Hauser, Frank & Lundmark, K. O. M., 2011, In: Journal of Insect Physiology. 57, 2, p. 231-245 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A hidden Markov model approach for determining expression from genomic tiling micro arrays

    Terkelsen, K. M., Gardner, P. P., Arctander, P. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 239

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Fast phylogenetic DNA barcoding

    Terkelsen, K. M., Boomsma, Wouter, Willerslev, Eske & Nielsen, Rasmus, 2008, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 363, 1512, p. 3997-4002 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Automatic generation of gene finders for eukaryotic species

    Terkelsen, K. M. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 263

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Statistical assignment of DNA sequences using Bayesian phylogenetics

    Terkelsen, K. M., Boomsma, Wouter, Huelsenbeck, J. P., Willerslev, Eske & Nielsen, Rasmus, 2008, In: Systematic Biology. 57, 5, p. 750-757 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration

    Terkelsen, T., Russo, F., Gromov, P., Haakensen, V. D., Brunak, Søren, Gromova, I., Krogh, Anders & Papaleo, E., 2020, In: Breast Cancer Research. 22, 1, 36 p., 73.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data

    Terkelsen, T., Krogh, Anders & Papaleo, E., 2020, In: PLOS Computational Biology. 16, 3, 20 p., e1007665.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    High-throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype-specific serologically relevant biomarkers

    Terkelsen, T., Pernemalm, M., Gromov, P., Borresen-Dale, A., Krogh, Anders, Haakensen, V. D., Lethio, J., Papaleo, E. & Gromova, I., 2021, In: Molecular Oncology. 15, 2, p. 429-461 33 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Bioinformatic Analysis of Breast Tumor Interstitial Fluids: Insights into a Pan-molecular Secretome

    Terkelsen, Thilde Bagger, 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    Changes in community structure and biomass of seagrass communities along gradients of siltation in SE Asia

    Terrados, J., Duarte, C. M., Borum, Jens, Agawin, N. S. R., Bach, S. S., Thampanya, U., Nielsen, Lars Kamp, Kenworthy, W. J., Geertz-Hansen, O. & Vermaat, J., 1998, In: Estuarine, Coastal and Shelf Science. 46, p. 757-768

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Are seagrass growth and survival constrained by the reducing conditions of the sediment?

    Terrados, J., Duarte, C. M., Nielsen, Lars Kamp, Agawin, N. S. R., Cacia, E., Lacap, D., Fortes, M. D., Borum, Jens, Lubanski, M. & Greve, T. M., 1999, In: Aquatic Botany. 65, p. 175-197

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Nutrient limitation of the tropical seagrass Enhalus acoroides (L.) Royle in Cape Boliano, NW Philippines

    Terrados, J., Agawin, N. S. R., Duarte, C. M., Fortes, M. D., Nielsen, Lars Kamp & Borum, Jens, 1999, In: Aquatic Botany. 65, p. 123-139

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Nutrient and mass allocation of South-east Asian seagrasses

    Terrados, J., Borum, Jens, Duarte, C. M., Fortes, M. D., Nielsen, Lars Kamp, Agawin, N. S. R. & Kenworthy, W. J., 1999, In: Aquatic Botany. 63, p. 203-217

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Molecular traces of alternative social organization in a termite genome

    Terrapon, N., Li, C., Robertson, H. M., Ji, L., Meng, X., Booth, W., Chen, Z., Childers, C. P., Glastad, K. M., Gokhale, K., Gowin, J., Gronenberg, W., Hermansen, R. A., Hu, H., Hunt, B. G., Huylmans, A. K., Khalil, S. M. S., Mitchell, R. D., Munoz-Torres, M. C., Mustard, J. A. & 23 others, Pan, H., Reese, J. T., Scharf, M. E., Sun, F., Vogel, H., Xiao, J., Yang, W., Yang, Z., Yang, Z., Zhou, J., Zhu, J., Brent, C. S., Elsik, C. G., Goodisman, M. A. D., Liberles, D. A., Roe, R. M., Vargo, E. L., Vilcinskas, A., Wang, J., Bornberg-Bauer, E., Korb, J., KU, thw266 & Liebig, J., 2014, In: Nature Communications. 5, 12 p., 3636.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Areas of climate stability of species ranges in the Brazilian Cerrado: disentangling uncertainties through time

    Terribile, L. C., Lima-Ribeiro, M. S., Bastos Araujo, M., Bizao, N., Collevatti, R. G., Dobrovolski, R., Franco, A. A., Guilhaumon, F., Lima, J. D. S., Murakami, D. M., Nabout, J. C., de Oliveira, G., de Oliveira, L. K., Rabelo, S. G., Rangel, T. F., Simon, L. M., Soares, T. N., de Campos Telles, M. P. & Felizola Diniz-Filho, J. A., 2012, In: Natureza & Conservacao. 10, 2, p. 152-159 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A comparison of some techniques used in individuality studies for their use as conservation tools

    Terry, A. M. R., McGregor, P. K. & Peake, T. M., 2001, In: Bioacoustics - the International Journal of Animal Sound and its Recording. 11, p. 169-188

    Research output: Contribution to journal › Journal article › Research

  20. Published

    Finding faces in the crowd: neural networks used to count and monitor populations of calling birds

    Terry, A. M. R. & McGregor, P. K., 2001, In: Adv. In Ethol.. 36, p. 274

    Research output: Contribution to journal › Journal article › Research

  21. Published

    The role of vocal individuality in conservation

    Terry, A. M. R., Peake, T. M. & McGregor, P. K., 2005, In: Frontiers in Zoology. 2, 10, p. 16

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Communication networks in a virtual world

    Terry, A. M. R. & Lachlan, R., 2005, Animal Communication Networks. McGregor, P. K. (ed.). Cornwall College, Newquay: Cambridge University Press, p. 604-627

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  23. Published

    Possible signs of recovery of the nearly extirpated Spitsbergen bowhead whales: calves observed in east Greenland

    Tervo, O. M., Louis, Marie Georgette Yolande J, Sinding, Mikkel Holger Strander, Heide-Jørgensen, M. P. & Hansen, R. G., 2023, In: Polar Research. 42, 4 p., 8809.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Effect of insulin on natriuretic peptide gene expression in porcine heart

    Terzic, D., Zois, N. E., Hunter, I., Christoffersen, Christina, Plomgaard, Peter Stendahl, Olsen, Lisbeth Høier, Jørgensen, Stine Ringholm, Pilegaard, Henriette & Goetze, Jens P. , 2020, In: Peptides. 131, 10 p., 170370.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles

    Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Wang, Y., Crehuet, R. & Lindorff-Larsen, Kresten, 2021, In: PLOS Computational Biology. 17, 1, 18 p., e1008551.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Lipid shape and packing are key for optimal design of pH-sensitive mRNA lipid nanoparticles

    Tesei, Giulio, Hsiao, Y. W., Dabkowska, A., Grönberg, G., Yanez Arteta, M., Ulkoski, D., Bray, D. J., Trulsson, M., Ulander, J., Lund, M. & Lindfors, L., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 2, 11 p., e2311700120.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Improved predictions of phase behaviour of intrinsically disordered proteins by tuning the interaction range

    Tesei, Giulio & Lindorff-Larsen, Kresten, 2023, In: Open Research Europe. 2, 94, 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Conformational ensembles of the human intrinsically disordered proteome

    Tesei, Giulio, Trolle, A. I., Jonsson, Nicolas, Betz, J., Knudsen, F. E., Pesce, Francesco, Johansson, Kristoffer Enøe & Lindorff-Larsen, Kresten, 2024, In: Nature. 626, p. 897-904 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Accurate model of liquid-liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties

    Tesei, Giulio, Schulze, T. K., Crehuet, R. & Lindorff-Larsen, Kresten, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 44, 10 p., e2111696118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants

    Teseo, S., van Zweden, J. S., Pontieri, L., Kooij, P. W., Sørensen, Søren Johannes, Wenseleers, T., Poulsen, Michael, Boomsma, Jacobus J. & Sapountzis, P., 2019, In: Animal Behaviour. 150, p. 239-254

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Plastic leachates impair growth and oxygen production in Prochlorococcus, the ocean's most abundant photosynthetic bacteria

    Tetu, S. G., Sarker, I., Schrameyer, V., Pickford, R., Elbourne, L. D. H., Moore, L. R. & Paulsen, I. T., 2019, In: Communications Biology. 2, 9 p., 184.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    SignalP 6.0 predicts all five types of signal peptides using protein language models

    Teufel, Felix Georg, Almagro Armenteros, J. J., Johansen, A. R., Gíslason, M. H., Pihl, S. I., Tsirigos, Konstantinos, Winther, Ole, Brunak, Søren, von Heijne, G. & Nielsen, H., 2022, In: Nature Biotechnology. 40, p. 1023-1025

    Research output: Contribution to journal › Comment/debate › Research

  33. Published

    DeepPeptide predicts cleaved peptides in proteins using conditional random fields

    Teufel, Felix Georg, Refsgaard, J. C., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Bioinformatics (Oxford, England). 39, 10, 6 p., btad616.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Deorphanizing Peptides Using Structure Prediction

    Teufel, Felix Georg, Refsgaard, J. C., Kasimova, M. A., Deibler, K., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Journal of Chemical Information and Modeling. 63, 9, 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    GraphPart: homology partitioning for biological sequence analysis

    Teufel, Felix Georg, Gíslason, M. H., Almagro Armenteros, J. J., Johansen, A. R., Winther, Ole & Nielsen, H., 2023, In: NAR Genomics and Bioinformatics. 5, 4, 9 p., lqad088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A fat-tissue sensor couples growth to oxygen availability by remotely controlling insulin secretion

    Texada, Michael James, Jørgensen, A. F., Christensen, Christian Fokdal, Koyama, Takashi, Malita, Alina, Smith, D. K., Marple, D. F. M., Danielsen, E. T., Petersen, S. K., Hansen, J. L., Halberg, Kenneth Veland & Rewitz, Kim, 2019, In: Nature Communications. 10, p. 1-16 1955.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Autophagy-Mediated Cholesterol Trafficking Controls Steroid Production

    Texada, Michael James, Malita, Alina, Christensen, C. F., Dall, K. B., Faergeman, N. J., Nagy, S., Halberg, Kenneth Veland & Rewitz, Kim, 2019, In: Developmental Cell. 48, 5, p. 659-671, e1-e4

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Autophagy regulates steroid production by mediating cholesterol trafficking in endocrine cells

    Texada, Michael James, Malita, Alina & Rewitz, Kim, 2019, In: Autophagy. 15, 8, p. 1478-1480

    Research output: Contribution to journal › Editorial › Research › peer-review

  39. Published

    Insulin signaling couples growth and early maturation to cholesterol intake in Drosophila

    Texada, Michael James, Lassen, Mette, Pedersen, L. H., Koyama, Takashi, Malita, Alina & Rewitz, Kim, 2022, In: Current Biology. 32, 7, p. 1548-1562.e6

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Regulation of Body Size and Growth Control

    Texada, Michael James, Koyama, Takashi & Rewitz, Kim, 2020, In: Genetics. 216, 2, p. 269-313 45 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Benthic carbon cycling in Young Sound, Northeast Greenland

    Thamdrup, B., Glud, R. N. & Hansen, J. W., 2007, Carbon cycling in Arctic marine ecosystems: Case study Young Sound.: Meddr. Grønland, Bioscience. Rysgaard, S. & Glud, R. N. (eds.). Meddelelser om Grønland, Bioscience, Vol. 58. p. 138-157

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  42. Published

    Attenuated purinergic receptor function in patients with type 2 diabetes

    Thaning, P., Bune, L. T., Hellsten, Ylva, Pilegaard, Henriette, Saltin, B. & Rosenmeier, J. B., 2010, In: Diabetes. 59, 1, p. 182-189 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Drying of Springs in the Himalayan Region of Nepal: Perspectives of Local Government Leaders on Causes, Consequences, and Conservation Efforts

    Thapa, B., Bhattarai, C., Dahal, N., Tiwari, S. & Jacobsen, Dean, 2023, In: Mountain Research and Development. 43, 4, p. R9-R15 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Complex pattern formation of marine gradient bacteria explained by a simple computer model

    Thar, R. & Fenchel, Tom, 2005, In: FEMS Microbiology Letters. 246, p. 75-59

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Survey of Motile Microaerophilic Bacterial Morphotypes in the Oxygen Gradient above a Marine Sulfidic Sediment

    Thar, R. & Fenchel, Tom, 2005, In: Applied and Environmental Microbiology. 71(7), p. 3682-3691

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Bacteria are not too small for spatial sensing of chemical gradients: An experimental evidence

    Thar, R. & Kühl, Michael, 2003, In: Proceedings of the National Academy of Science of the United States of America. 100, 10, p. 5748-5753

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Propagation of electromagnetic radiation in mitochondria?

    Thar, R. & Kühl, Michael, 2004, In: Journal of Theoretical Biology. 230, p. 261-270

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Fiber-optic fluorometer for microscale mapping of photosynthetic pigments in microbial communities

    Thar, R. M., Kühl, Michael & Holst, G., 2001, In: Applied and Environmental Microbiology. 67, 6, p. 2823-2828

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    True Chemotaxis in Oxygen Gradients of the Sulfur-Oxidizing Bacterium Thiovulum majus

    Thar, R. M. & Fenchel, Tom, 2001, In: Applied and Environmental Microbiology. 67(7), p. 3299-3303

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Conspicuous veils formed by vibrioid bacteria on sulfidic marine sediment

    Thar, R. M. & Kühl, Michael, 2002, In: Applied and Environmental Microbiology. 68, 12, p. 6310-6320

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    A new system for three-dimensional tracking of motile microorganisms

    Thar, R. M., Blackburn, N. & Kühl, Michael, 2000, In: Applied and Environmental Microbiology. 66, p. 2238-2242

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Motility of Marichromatium gracile in Response to Light, Oxygen, and Sulfide

    Thar, R. M. & Kühl, Michael, 2001, In: Applied and Environmental Microbiology. 67, 12, p. 5410-5419

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Suppression of parasite-specific response in Plasmodium falciparum malaria. A longitudinal study of blood mononuclear cell proliferation and subset composition

    Theander, Thor Grundtvig, Bygbjerg, Ib Christian, Andersen, B. J., Jepsen, S., Kharazmi, A. & Ødum, Niels, 1986, In: Scandinavian Journal of Immunology. 24, 1, p. 73-81 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Inhibition of human lymphocyte proliferation and cleavage of interleukin-2 by Pseudomonas aeruginosa proteases

    Theander, Thor Grundtvig, Kharazmi, A., Pedersen, Bente Klarlund, Christensen, L. D., Tvede, N., Poulsen, Lars K., Ødum, Niels, Svenson, M. & Bendtzen, K., 1988, In: Infection and Immunity. 56, 7, p. 1673-7 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Bacterial carbon biomass calculated from biovolumes

    Theil-Nielsen, J. & Søndergaard, M., 1998, In: Archiv fuer Hydrobiologie. Supplement Volumes, Monographic Studies. 141.2, p. 195-207

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Transcription factor-driven coordination of cell cycle exit and lineage-specification in vivo during granulocytic differentiation: In memoriam Professor Niels Borregaard

    Theilgaard-Mønch, Kim, Pundhir, Sachin, Reckzeh, K., Su, Jinyu, Tapia, Marta Cecylia, Furtwängler, Benjamin, Jendholm, J., Jakobsen, J. S., Hasemann, M. S., Knudsen, K. J., Cowland, J. B., Fossum, A., Schoof, E., Schuster, Mikkel Bruhn & Porse, Bo Torben, 2022, In: Nature Communications. 13, 1, 17 p., 3595.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Genetic variation in six species of sacoglossan opisthobranchs

    Theisen, B. F. & Jensen, K. R., 1991, In: Journal of Molluscan Studies. 57(2), p. 267-75

    Research output: Contribution to journal › Journal article › Research

  58. Published

    Origin of clonal diversity in triploid parthenohenetic trichoniscus Pusillus pusillus (Isopoda, Crustecea) based upon allozyme and nucleotide sequence data

    Theisen, B. F., Christensen, B. & Arctander, P., 1995, In: Journal of Evolutionary Biology. 8, p. 71-80

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Morphological and physiological studies on the olfactory organ of the striped eel catfish, PLOTOSUS LINEATUS

    Theisen, B., Zeiske, E., Silver, W., Marui, T. & Caprio, J., 1991, In: Marine Biology. Vol 110, p. 127-135

    Research output: Contribution to journal › Journal article › Research

  60. Published

    αα-hub coregulator structure and flexibility determine transcription factor binding and selection in regulatory interactomes

    Theisen, Frederik Friis, Salladini, Edoardo, Davidsen, R., Rasmussen, C. J., Staby, L., Kragelund, Birthe Brandt & Skriver, Karen, 2022, In: Journal of Biological Chemistry. 298, 6, 16 p., 101963.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    The Behaviour of Short Linear Motifs in the DREB2A Transcription Factor and the Effect of Molecular Context

    Theisen, Frederik Friis, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 160 p.

    Research output: Book/Report › Ph.D. thesis › Research

  62. Published

    Molecular switching in transcription through splicing and proline-isomerization regulates stress responses in plants

    Theisen, Frederik Friis, Prestel, Andreas, Elkjær, Steffie Martina H, Leurs, Y. H. A., Morffy, N., Strader, L. C., O'Shea, Charlotte, Teilum, Kaare, Kragelund, Birthe Brandt & Skriver, Karen, 2024, In: Nature Communications. 15, 1, 13 p., 592.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Quantification of Conformational Entropy Unravels Effect of Disordered Flanking Region in Coupled Folding and Binding

    Theisen, Frederik Friis, Staby, L., Tidemand, Frederik Grønbæk, O'Shea, Charlotte, Prestel, Andreas, Willemoës, Martin, Kragelund, Birthe Brandt & Skriver, Karen, 2021, In: Journal of the American Chemical Society. 143, 36, p. 14540-14550 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    How genomics can help biodiversity conservation

    The European Reference Genome Atlas Consortium, T. E. R. G. A. C., 2023, In: Trends in Genetics. 39, 7, 15 p.

    Research output: Contribution to journal › Review › Research › peer-review

  65. Published

    Phylogeny of Himantormia - an Antarctic genus in the Parmeliaceae (lichenized ascomycetes).

    Thell, A., Søchting, Ulrik, Kärnefelt, I., Elix, J. E. & Sancho, L. G., 2007, In: Bibliotheca Lichenologica. 95, p. 531-541 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Xanthoparmelia lineola sensu lato in Australia and North America

    Thell, A., Elix, J. A. & Søchting, Ulrik, 2009, In: Bibliotheca Lichenologica. 99, p. 393-404

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Declining genetic diversity of European honeybees along the twentieth century

    Themudo, G. E., Rey de la Iglesia, Alba, Tascón, L. R., Jensen, Annette Bruun, Rodrigues da Fonseca, Rute Andreia & Campos, P. F., 29 Jun 2020, In: Scientific Reports. 10, 12 p., 10520.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Large effective population size and temporal genetic stability in Atlantic cod (Gadus morhua) in the southern Gulf of St. Lawrence

    Therkildsen, N. O., Nielsen, E. E., Swain, D. P. & Pedersen, Jes Søe, Oct 2010, In: Canadian Journal of Fisheries and Aquatic Sciences. 67, 10, p. 1585–1595

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Lidar-derived variables as a proxy for fungal species richness and composition in temperate Northern Europe

    Thers, H., Brunbjerg, A. K., Læssøe, Thomas, Ejrnæs, R., Bøcher, P. K. & Svenning, J., Oct 2017, In: Remote Sensing of Environment. 200, p. 102-113 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Investigation of transcriptional output and regulation in plants using Cap Analysis of Gene Expression (CAGE)

    Thieffry, A., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 128 p.

    Research output: Book/Report › Ph.D. thesis › Research

  71. Published

    PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave

    Thieffry, A., López Márquez, Diego, Lange, Jette Bornholdt, Gholami Malekroudi, M., Bressendorff, Simon, Barghetti, A., Sandelin, Albin Gustav & Brodersen, Peter, 2022, In: The Plant Cell. 34, 7, 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Characterization of Arabidopsis thaliana Promoter Bidirectionality and Antisense RNAs by Inactivation of Nuclear RNA Decay Pathways

    Thieffry, A., Vigh, Maria Louisa, Lange, Jette Bornholdt, Ivanov, M., Brodersen, Peter & Sandelin, Albin Gustav, 2020, In: The Plant Cell. 32, 6, p. 1845-1867 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Genetic variation of inbreeding depression among floral and fitness traits in Silene nutans

    Thiele, J., Hansen, T. M., Siegismund, Hans Redlef & Hauser, T. P., 2010, In: Heredity. 104, 1, p. 52-60 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Range size patterns in European freshwater trematodes

    Thieltges, D., Hof, C., Borregaard, Michael Krabbe, Dehling, M., Brändle, M., Brandl, R. & Poulin, R., 2011, In: Ecography. 34, 6, p. 982-989 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Host diversity and latitude drive the trematode diversity patterns in the European freshwater fauna

    Thieltges, D. W., Hof, C., Dehling, D. M., Brändle, M., Brandl, R. & Poulin, R., 2011, In: Global Ecology and Biogeography. 20, 5, p. 675-682 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Reconstruction of annual growth in relation to summer temperatures and translocation of nutrients in the aquatic moss Drepanocladus trifarius from West Greenland

    Thiemer, K., Christiansen, D. M., Petersen, N. S., Mortensen, S. M. & Christoffersen, Kirsten Seestern, 2018, In: Polar Biology. 41, 11, p. 2311-2321

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Sulphide tolerance of the marine nematode Oncholaimus campylocercoides - a result of internal sulphur formation?

    Thiermann, F., Vismann, Bent & Giere, O., 2000, In: Marine Ecology - Progress Series. 193, p. 251-259

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    The γ-hydroxybutyric acid (GHB) analogue NCS-382 is a substrate for both monocarboxylate transporters subtypes 1 and 4

    Thiesen, L., Belew, Zeinu Mussa, Griem-Krey, Nane, Pedersen, Stine Helene Falsig, Crocoll, C., Nour-Eldin, Hussam Hassan & Wellendorph, Petrine, 15 Feb 2020, In: European Journal of Pharmaceutical Sciences. 143, p. 1-9 105203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Escherichia coli belonging to ST131 rarely transfers blactx-m-15 to fecal Escherichia coli

    Thingholm, K. R., Hertz, F. B., Løbner-Olesen, Anders, Frimodt-Møller, N. & Nielsen, K. L., 2019, In: Infection and Drug Resistance. 12, p. 2429-2435

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Ecology impacts the decrease of Spirochaetes and Prevotella in the fecal gut microbiota of urban humans

    Thingholm, L. B., Bang, C., Rühlemann, M. C., Starke, A., Sicks, F., Kaspari, V., Jandowsky, A., Froelich, K., Ismer, G., Bernhard, A., Bombis, C., Struve, B., Rausch, P. & Franke, A., 2021, In: BMC Microbiology. 21, 20 p., 276.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Preliminary distribution maps of bryophytes in Denmark, vol. 3 (musci j-z) in: Söderström, L. Preliminary distribution maps of bryophytes in northwestern Europe vol. 3 (musci j-z)

    Thingsgaard, K. & Damsholt, K., 1998, Trondheim, Norge: Mossornas Vänner. 69 p.

    Research output: Book/Report › Book › Research

  82. Published

    Ability of a "minimum" microbial food web model to reproduce response patterns observed in mesocosms manipulated with N and P, glucose, and Si

    Thingstad, T. F., Havskum, H., Zweifel, U. L., Berdalet, E., Sala, M. M., Peters, F., Alcaraz, M., Scharek, R., Perez, M., Jacquet, S., Flaten, G. A. F., Dolan, J. R., Marrasé, C., Rassoulzadegan, F., Hagstrøm, Å. & Vaulot, D., 2007, In: Journal of Marine Systems 64. 64, p. 15-34

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Control of bacterial production in cold waters. A theoretical analysis of mechanisms relating bacterial production and zooplankton biomass in Disco Bay, Western Greenland

    Thingstad, T. F., Nielsen, T. G., Hansen, A. S. & Levinsen, H., 2002, In: Marine Ecology - Progress Series. 228, p. 15-24

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Quantification of fungal activity in arbuscular mycorrhizal symbiosis by polyacrylamide gel electrophoresis and densitometry of malate dehydrogenase

    Thingstrup, I. & Rosendahl, Søren, 1994, In: Soil. Biol. Biochem.. 26, p. 1483-1489

    Research output: Contribution to journal › Journal article › Research

  85. Published

    Assessment of fungicide side effects on vesicular-arbuscular mycorrhiza

    Thingstrup, I., Ravnskov, S. & Rosendahl, Søren, 1992, Proceedings of the International Symposium on Environmental Aspects of Pesticide Microbiology. Sverige, p. 37-41

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  86. Published

    Detection of the arbuscular mycorrhizal fungus Scutellospora heterogama within roots using polyclonal antibodies

    Thingstrup, I., Dodd, J. C., Rozycka, M., Jeffries, P. & Rosendahl, Søren, 1995, In: Mycological Research. 99, p. 1225-1232

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Hyperosmotic stress induces Rho/Rho kinase/LIM kinase-mediated cofilin phosphorylation in tubular cells: key role in the osmotically triggered F-actin response

    Thirone, A. C. P., Speight, P., Zulys, M., Rotstein, O. D., Szaszi, K., Pedersen, Stine Helene Falsig & Kapus, A., 2009, In: American Journal of Physiology: Cell Physiology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Population dynamics of the fast-growing sub-populations of Pseudomonas and total bacteria, and their protozoan grazers, revealed by fenpropimorph treatment

    Thirup, L., Ekelund, Flemming, Johnsen, K. E. & Jacobsen, C. S., 2000, In: Soil Biology & Biochemistry. 32, 11-12, p. 1615-1623

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    CAGEfightR: Cap Analysis of Gene Expression (CAGE) in R/Bioconductor

    Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, Apr 2018

    Research output: Other contribution › Research

  90. Published

    Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

    Thodberg, Malte, Thieffry, A., Lange, Jette Bornholdt, Boyd, M., Holmberg, Christian, Azad, A., Workman, C. T., Chen, Y., Ekwall, K., Nielsen, Olaf & Sandelin, Albin Gustav, 28 Feb 2019, In: Nucleic Acids Research. 47, 4, p. 1671-1691 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Organism- and disease-specific atlases of transcription start sites using Cap Analysis of Gene Expression (CAGE)

    Thodberg, Malte, 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  92. Published

    A step-by-step guide to analyzing CAGE data using R/Bioconductor

    Thodberg, Malte & Sandelin, Albin Gustav, 18 Jun 2019, In: F1000Research. 8, 49 p., 886.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    CAGEfightR: analysis of 5'-end data using R/Bioconductor

    Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, 2019, In: BMC Bioinformatics. 20, 13 p., 487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Effect of acidification on an Arctic phytoplankton community from Disko Bay, West Greenland

    Thoisen, C., Riisgaard, K., Lundholm, Nina, Nielsen, T. G. & Hansen, Per Juel, 2015, In: Marine Ecology - Progress Series. 520, p. 21-34 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome

    Thomas, H. J. D., Myers-Smith, I. H., Bjorkman, A. D., Elmendorf, S. C., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Kattge, J., Goetz, S. J., Guay, K. C., Alatalo, J. M., Anadon-Rosell, A. & 69 others, Angers-Blondin, S., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Collier, L. S., Cooper, E. J., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Johnstone, J. F., Kaarlejärvi, E., Kulonen, A., Lamarque, L. J., Lévesque, E., Little, C. J., Michelsen, Anders, Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Semenchuk, P. R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Tape, K. D., te Beest, M., Tomaselli, M., Trant, A., Treier, U. A., Venn, S., Vowles, T., Weijers, S., Zamin, T., Atkin, O. K., Bahn, M., Blonder, B., Campetella, G., Cerabolini, B. E. L., Chapin, F. S., Dainese, M., de Vries, F. T., Díaz, S., Green, W., Jackson, R. B., Manning, P., Niinemets, Ü., Ozinga, W. A., Peñuelas, J., Reich, P. B., Schamp, B., Sheremetev, S. & van Bodegom, P. M., 2019, In: Global Ecology and Biogeography. 28, 2, p. 78-95

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Global plant trait relationships extend to the climatic extremes of the tundra biome

    Thomas, H. J. D., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Kattge, J., Diaz, S., Vellend, M., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Henry, G. H. R., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Beck, P. S. A. & 85 others, Georges, D., Goetz, S. J., Guay, K. C., Rüger, N., Soudzilovskaia, N. A., Spasojevic, M. J., Alatalo, J. M., Alexander, H. D., Anadon-Rosell, A., Angers-Blondin, S., te Beest, M., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K. S., Collier, L. S., Cooper, E. J., Elberling, Bo, Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Johnstone, J. F., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Kaarlejarvi, E., Kulonen, A., Lamarque, L. J., Lantz, T. C., Lévesque, E., Little, C. J., Michelsen, Anders, Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Shetti, R., Speed, J. D. M., Suding, K. N., Tape, K. D., Tomaselli, M., Trant, A. J., Treier, U. A., Tremblay, M., Venn, S. E., Vowles, T., Weijers, S., Wookey, P. A., Zamin, T. J., Bahn, M., Blonder, B., van Bodegom, P. M., Bond-Lamberty, B., Campetella, G., Cerabolini, B. E. L., Chapin, F. S., Craine, J. M., Dainese, M., Green, W. A., Jansen, S., Kleyer, M., Manning, P., Niinemets, Onoda, Y., Ozinga, W. A., Peñuelas, J., Poschlod, P., Reich, P. B., Sandel, B., Schamp, B. S., Sheremetiev, S. N. & de Vries, F. T., 2020, In: Nature Communications. 11, 1, 12 p., 1351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Towards an integrated understanding of the consequences of fungus domestication on the fungus-growing termite gut microbiota

    Poulsen, Michael, 2015, In: Environmental Microbiology. 17, 8, p. 2562-2572 11 p.

    Research output: Contribution to journal › Review › Research › peer-review

  98. Published

    The role of symbiont genetic distance and potential adaptability in host preference towards Pseudonocardia symbionts in Acromyrmex leaf-cutting ants

    Poulsen, Michael, Maynard, J., Roland, D. L. & Currie, C. R., 2011, In: Journal of Insect Science. 11, 1, p. 1-12

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Complementary symbiont contributions to plant decomposition in a fungus-farming termite

    Thomas-Poulsen, M., Hu, H., Li, C., Chen, Z., Xu, L., Otani, S., Nygaard, S., Nobre, T., Klaubauf, S., Schindler, P. M., Hauser, F., Pan, H., Yang, Z., Sonnenberg, A. S. M., de Beer, Z. W., Zhang, Y., Wingfield, M. J., Grimmelikhuijzen, C., de Vries, R. P., Korb, J. & 4 others, Aanen, D. K., Wang, J., Boomsma, Jacobus J. & KU, thw266, 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 40, 6 p., 14500-14505.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Integrating coarse-grained molecular dynamics simulations with small-angle X-ray scattering data to characterize multidomain proteins and their assemblies

    Thomasen, Emil, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.

    Research output: Book/Report › Ph.D. thesis › Research

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