Department of Biology

 

 
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  1. Published

    Systematic clustering of transcription start site landscapes

    Zhao, X., Valen, E., Parker, B. J. & Sandelin, Albin Gustav, 2011, In: P L o S One. 6, 8, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Fine roots and extramatrical mycelia regulate the composition of soil organic carbon and nitrogen in a subtropical montane forest

    Zhao, X., Tian, Q., Michelsen, Anders, Chen, L., Yue, P., Feng, Z., Lin, Q., Zhao, R. & Liu, F., 2024, In: Forest Ecology and Management. 554, 8 p., 121661.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The effects of mycorrhizal associations on fine root decomposition in temperate and (sub)tropical forests

    Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Zhao, R., Yuan, X., Chen, L., Zuo, J. & Liu, F., 2023, In: Plant and Soil. 487, 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The effect of experimental warming on fine root functional traits of woody plants: Data synthesis

    Zhao, X., Tian, Q., Michelsen, Anders, Lu, M., Ren, B., Huang, L. & Zhao, R., 2023, In: Science of the Total Environment. 894, 9 p., 165003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. E-pub ahead of print

    Home-field advantage of litter decomposition differs among leaves, absorptive roots, and transport roots

    Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Yuan, X., Chen, L., Lu, M., Jiang, Q., Zhao, R. & Liu, F., 2024, (E-pub ahead of print) In: Plant and Soil.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations

    Zhao, X., Qu, Kunli, Curci, B., Yang, H., Bolund, L., Lin, L. & Luo, Y., 2023, In: Biomolecules. 13, 5, 15 p., 870.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Exploration of Intratumor Heterogeneity and Tumoral Microenvironment in Non-small Cell Lung Cancer

    Zhao, X., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 137 p.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Exome sequencing and linkage analysis identified Tenascin-C (TNC) as a novel causative gene in nonsyndromic hearing loss

    Zhao, Y., Zhao, F., Zong, L., Zhang, P., Guan, L., Zhang, J., Wang, D., Wang, J., Chai, W., Lan, L., Li, Q., Han, B., Yang, L., Jin, X., Yang, W., Hu, X., Wang, X., Li, N., Li, Y., Petit, C. & 4 others, Wang, J., Yang, H., Wang, J. & Wang, Q., 2013, In: P L o S One. 8, 7, 8 p., e69549.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Evolution of multiple cell clones over a 29-year period of a CLL patient

    Zhao, Z., Goldin, L., Liu, S., Wu, L., Zhou, W., Lou, H., Yu, Q., Tsang, S. X., Jiang, M., Li, F., McMaster, M., Li, Y., Lin, X., Wang, Z., Xu, L., Marti, G., Li, G., Wu, K., Yeager, M., Yang, H. & 6 others, Xu, X., Chanock, S. J., Li, B., Hou, Y., Caporaso, N. & Dean, M., 2016, In: Nature Communications. 7, 10 p., 13765.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Three novel structural variations at the major histocompatibility complex and IL12B predispose to psoriasis

    Zhen, Q., Zhang, Y., Yu, Y., Yang, H., Zhang, T., Li, X., Mo, X., Li, B., Wu, J., Liang, Y., Ge, H., Xu, Q., Chen, W., Qian, W., Xu, H., Chen, G., Bai, B., Zhang, J., Lu, Y., Chen, S. & 31 others, Zhang, H., Zhang, Y., Chen, X., Li, X., Jin, X., Lin, X., Yong, L., Fang, M., Zhao, J., Lu, Y., Wu, S., Jiang, D., Shi, J., Cao, H., Qiu, Y., Li, S., Kang, X., Shen, J., Ma, H., Sun, S., Fan, Y., Chen, W., Bai, M., Jiang, Q., Li, W., Lv, C., Li, S., Chen, M., Li, F., Li, Y. & Sun, L., 2022, In: British Journal of Dermatology. 186, 2, p. 307-317 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Effective noninvasive zygosity determination by maternal plasma target region sequencing

    Zheng, J., Xu, C., Guo, J., Wei, Y., Ge, H., Li, X., Zhang, C., Jiang, H., Pan, L., Tang, W., Xie, W., Zhang, H., Zhao, Y., Jiang, F., Chen, S., Wang, W., Xu, X., Chen, F., Huang, H. & Jiang, H., 2013, In: P L o S One. 8, 6, 6 p., e65050.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Expression of genes and enzymes involved in ovarian steroidogenesis in relation to human follicular development

    Zheng, M., tcg964, tcg964, Rasmussen, F. R., Cadenas, J., Christensen, Søren Tvorup & Mamsen, L. S., 2023, In: Frontiers in Endocrinology. 14, 17 p., 1268248.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Development of a Simvastatin Selection Marker for a Hyperthermophilic Acidophile, Sulfolobus islandicus

    Zheng, T., Huang, Q., Zhang, C., Ni, J., She, Q. & Shen, Y., 2012, In: Applied and Environmental Microbiology. 78, 2, p. 568-574 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Systematical analysis reveals a strong cancer relevance of CREB1-regulated genes

    Zheng, T., Huang, J., Xiang, X., Li, S., Yu, J., Qu, K., Xu, Z., Han, P., Dong, Z., Liu, Y., Xu, F., Yang, H., Jäättelä, M., Luo, Y. & Liu, B., 2021, In: Cancer Cell International. 21, 16 p., 530.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes

    Zheng, X., Zhao, Q., Wu, H., Li, W., Wang, H., Meyer, C. A., Qin, Q. A., Xu, H., Zang, C., Jiang, P., Li, F., Hou, Y., He, J., Wang, J., Wang, J., Zhang, P., Zhang, Y. & Liu, X. S., 2014, In: Genome Biology (Online Edition). 15, 8, 13 p., 419.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Sequencing, annotation and comparative analysis of nine BACs of giant panda (Ailuropoda melanoleuca)

    Zheng, Y., Cai, J., Li, J., Li, B., Lin, R., Tian, F., Wang, X. & Wang, J., 2010, In: Science China Life Sciences. 53, 1, p. 107-111 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Engineering of phi29 DNA polymerase with elevated thermostability and replication activity

    Zheng, Y., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.

    Research output: Book/Report › Ph.D. thesis › Research

  18. Published

    The origin of domestication genes in goats

    Zheng, Z., Wang, X., Li, M., Li, Y., Yang, Z., Wang, X., Pan, X., Gong, M., Zhang, Y., Guo, Y., Wang, Y., Liu, J., Cai, Y., Chen, Q., Okpeku, M., Colli, L., Cai, D., Wang, K., Huang, S., Sonstegard, T. S. & 16 others, Esmailizadeh, A., Zhang, W., Zhang, T., Xu, Y., Xu, N., Yang, Y., Han, J., Chen, L., Lesur, J., Daly, K. G., Bradley, D. G., Heller, Rasmus, KU, thw266, Wang, W., Chen, Y. & Jiang, Y., 2020, In: Science Advances. 6, 21, eaaz5216.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

    Zhong, H., Ren, H., Lu, Y., Fang, C., Hou, G., Yang, Z., Chen, B., Yang, F., Zhao, Y., Shi, Z., Zhou, B., Wu, J., Zou, H., Zi, J., Chen, J., Bao, X., Hu, Y., Gao, Y., Zhang, J., Xu, X. & 10 others, Hou, Y., Yang, H., Wang, J., Liu, S., Jia, H., Madsen, L., Brix, S., Kristiansen, Karsten, Liu, F. & Li, J., 2019, In: EBioMedicine. 47, p. 373-383 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Characterization of respiratory microbial dysbiosis in hospitalized COVID-19 patients

    Zhong, H., Wang, Y., Shi, Z., Zhang, L., Ren, H., He, W., Zhang, Z., Zhu, A., Zhao, J., Xiao, F., Yang, F., Liang, T., Ye, F., Zhong, B., Ruan, S., Gan, M., Zhu, J., Li, F., Li, F., Wang, D. & 13 others, Li, J., Ren, P., Zhu, S., Yang, H., Wang, J., Kristiansen, Karsten, Tun, H. M., Chen, W., Zhong, N., Xu, X., Li, Y., Li, J. & Zhao, J., 2021, In: Cell Discovery. 7, 14 p., 23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children

    Zhong, H., Penders, J., Shi, Z., Ren, H., Cai, K., Fang, Chao, Ding, Q., Thijs, C., Blaak, E. E., Stehouwer, C. D. A., Xu, X., Yang, H., Wang, J., Wang, J., Jonkers, D. M. A. E., Masclee, A. A. M., Brix, S., Li, J., Arts, I. C. W. & Kristiansen, Karsten, 2019, In: Microbiome. 7, p. 1-14 2.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Lipidomic profiling reveals distinct differences in plasma lipid composition in healthy, prediabetic, and type 2 diabetic individuals

    Zhong, H., Fang, C., Fan, Y., Lu, Y., Wen, B., Ren, H., Hou, G., Yang, F., Xie, H., Jie, Z., Peng, Y., Ye, Z., Wu, J., Zi, J., Zhao, G., Chen, J., Bao, X., Hu, Y., Gao, Y., Zhang, J. & 7 others, Yang, H., Wang, J., Madsen, L., Kristiansen, Karsten, Ni, C., Li, J. & Liu, S., Jul 2017, In: GigaScience. 6, 7, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Multi-omics association studies on type 2 diabetes

    Zhong, H., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 171 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Deep sequencing of the MHC region in the Chinese population contributes to studies of complex disease

    Zhou, F., Cao, H., Zuo, X., Zhang, T., Zhang, X., Liu, X., Xu, R., Chen, G., Zhang, Y., Zheng, X., Jin, X., Gao, J., Mei, J., Sheng, Y., Li, Q., Liang, B., Shen, J., Shen, C., Jiang, H., Zhu, C. & 53 others, Fan, X., Xu, F., Yue, M., Yin, X., Ye, C., Zhang, C., Liu, X., Yu, L., Wu, J., Chen, M., Zhuang, X., Tang, L., Shao, H., Wu, L., Li, J., Xu, Y., Zhang, Y., Zhao, S., Wang, Y., Li, G., Xu, H., Zeng, L., Wang, J., Bai, M., Chen, Y., Chen, W., Kang, T., Wu, Y., Xu, X., Zhu, Z., Cui, Y., Wang, Z., Yang, C., Wang, P., Xiang, L., Chen, X., Zhang, A., Gao, X., Zhang, F., Xu, J., Zheng, M., Zheng, J., Zhang, J., Yu, X., Li, Y., Yang, S., Yang, H., Wang, J., Liu, J., Hammarstrom, L., Sun, L., Wang, J. & Zhang, X., 2016, In: Nature Genetics. 48, 7, 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Performance characterization of PCR-free whole genome sequencing for clinical diagnosis

    Zhou, G., Zhou, M., Zeng, F., Zhang, N., Sun, Y., Qiao, Z., Guo, X., Zhou, S., Yun, G., Xie, J., Wang, X., Liu, F., Fan, C., Wang, Y., Fang, Z., Tian, Z., Dai, W., Sun, J., Peng, Z. & Song, L., 2022, In: Medicine. 101, 10, 8 p., e28972.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Metabolic Inactivity and Re-awakening of a Nitrate Reduction Dependent Iron(II)-Oxidizing Bacterium Bacillus ferrooxidans

    Zhou, G., Yang, X. R., Rønn, Regin, Su, J., Cui, L., Zheng, B. & Zhu, Y., 2019, In: Frontiers in Microbiology. 10, 10 p., 1494.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Neoadjuvant chemotherapy alters peripheral and tumour-infiltrating immune cells in breast cancer revealed by single-cell RNA sequencing

    Zhou, H., Li, G., Yin, J., Wang, T., Hu, H., Li, T., Zhou, Q., Hu, J., Wang, L., Dong, S., Wei, C., Zhang, C., Lu, Y., Zhou, W., Huang, C., Yang, H., Zhou, D., Wang, L. & Wu, K., 2021, In: Clinical and Translational Medicine. 11, 12, 6 p., e621.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  28. Published

    A comprehensive evaluation of hydrological processes in a second-generation dynamic vegetation model

    Zhou, H., Tang, Jing, Olin, S. & Miller, P. A., 2024, In: Hydrological Processes. 38, 4, 17 p., e15152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Physical and bacterial controls on inorganic nutrients and dissolved organic carbon during a sea ice growth and decay experiment

    Zhou, J., Delille, B., Kaartokallio, H., Kattner, G., Kuosa, H., Tison, J. -., Autio, R., Dieckmann, G. S., Evers, K., Jørgensen, L., Kennedy, H., Kotovitch, M., Luhtanen, A. -., Stedmon, C. A. & Thomas, D. N., 2014, In: Marine Chemistry. 166, p. 59-69 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Whole Genome Sequencing in the Evaluation of Fetal Structural Anomalies: A Parallel Test with Chromosomal Microarray Plus Whole Exome Sequencing

    Zhou, J., Yang, Z., Sun, J., Liu, L., Zhou, X., Liu, F., Xing, Y., Cui, S., Xiong, S., Liu, X., Yang, Y., Wei, X., Zou, G., Wang, Z., Wei, X., Wang, Y., Zhang, Y., Yan, S., Wu, F., Zeng, F. & 4 others, Wang, J., Duan, T., Peng, Z. & Sun, L., 2021, In: Genes. 12, 3, 14 p., 376.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Identification and application of bioactive components in meat hydrolysates that induce gastrointestinal signalling and release of incretins

    Zhou, J., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Myosin heavy chain isoforms of human muscle after short-term spaceflight.

    Zhou, M., Klitgaard, H., Saltin, B., Roy, R. R., Edgerton, V. R. & Gollnick, P. D., 1995, In: Journal of Applied Physiology. 78(5), p. 1740-1744

    Research output: Contribution to journal › Journal article › Research

  33. Published

    Complex evolutionary trajectories of sex chromosomes across bird taxa

    Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, 8 p., 1246338.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Single-cell RNA-seq reveals distinct dynamic behavior of sex chromosomes during early human embryogenesis

    Zhou, Q., Wang, T., Leng, L., Zheng, W., Huang, J., Fang, F., Yang, L., Chen, F., Lin, G., Wang, W. & Kristiansen, Karsten, 2019, In: Molecular Reproduction and Development. 86, 7, p. 871-882

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Maternal and paternal contribution to the development of human preimplantation embryos

    Zhou, Q., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/Report › Ph.D. thesis › Research

  36. Published

    Dss1 interaction with Brh2 as a regulatory mechanism for recombinational repair.

    Zhou, Q., Kojic, M., Cao, Z., Lisby, Michael, Mazloum, N. A. & Holloman, W. K., 2007, In: Molecular and Cellular Biology. 27, 7, p. 2512-26 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations

    Zhou, X., Sun, F., Xu, S., Fan, G., Zhu, K., Liu, X., Chen, Y., Shi, C., Yang, Y., Huang, Z., Chen, J., Hou, H., Guo, X., Chen, W., Chen, Y., Wang, X., Lv, T., Yang, D., Zhou, J., Huang, B. & 17 others, Wang, Z., Zhao, W., Tian, R., Xiong, Z., Xu, J., Liang, X., Chen, B., Liu, W., Wang, J., Pan, S., Fang, X., Li, M., Wei, F., Xu, X., Zhou, K., Wang, J. & Yang, G., 2013, In: Nature Communications. 4, 6 p., 2708.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Platypus and echidna genomes reveal mammalian biology and evolution

    Zhou, Y., Shearwin-Whyatt, L., Li, J., Song, Z., Hayakawa, T., Stevens, D., Fenelon, J. C., Peel, E., Cheng, Y., Pajpach, F., Bradley, N., Suzuki, H., Nikaido, M., Damas, J., Daish, T., Perry, T., Zhu, Z., Geng, Y., Rhie, A., Sims, Y. & 22 others, Wood, J., Haase, B., Mountcastle, J., Fedrigo, O., Li, Q., Yang, H., Wang, J., Johnston, S. D., Phillippy, A. M., Howe, K., Jarvis, E. D., Ryder, O. A., Kaessmann, H., Donnelly, P., Korlach, J., Lewin, H. A., Graves, J., Belov, K., Renfree, M. B., Grutzner, F., Zhou, Q. & KU, thw266, 2021, In: Nature. 592, 7856, p. 756-762

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Eighty million years of rapid evolution of the primate Y chromosome

    Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N., Qi, X. & 3 others, Wu, D. D., Schierup, M. H. & KU, thw266, 2023, In: Nature Ecology and Evolution. 7, 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Monotreme Genomes Provide Insights into the Evolution of Early Mammal and Monotreme Sex Chromosomes System

    Zhou, Y., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community

    Zhou, Y., Pope, P. B., Li, S., Wen, B., Tan, F., Cheng, S., Chen, J., Yang, J., Liu, F., Lei, X., Su, Q., Zhou, C., Zhao, J., Dong, X., Jin, T., Zhou, X., Yang, S., Zhang, G., Yang, H., Wang, J. & 3 others, Yang, R., Eijsink, V. G. H. & Wang, J., 2014, In: Scientific Reports. 4, 6 p., 5288.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds

    Zhu, C., Miller, M., Lusskin, N., Bergk Pinto, B., Maccario, Lorrie, Häggblom, M., Vogel, T., Larose, C. & Bromberg, Y., 2020, In: MicrobiologyOpen. 9, 9, e1100.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival

    Zhu, C., Sun, B., Liu, T., Zheng, H., Gu, W., He, W., Sun, F., Wang, Y., Yang, M., Bei, W., Peng, Xu, She, Q., Xie, L. & Chen, L., 5 Jun 2017, In: BMC Genomics. 18, 19 p., 436.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice

    Zhu, F., Guo, R., Wang, W., Ju, Y., Wang, Q., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Liu, B., Guo, L., He, X., Chen, Y., Chen, C. & 10 others, Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, L., Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Molecular Psychiatry. 25, 11, p. 2905-2918 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Metagenome-wide association of gut microbiome features for schizophrenia

    Zhu, F., Ju, Y., Wang, W., Wang, Q., Guo, R., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Feng, J., Guo, L., He, X., Chen, Y., Chen, C. & 10 others, Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, L., Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Nature Communications. 11, 10 p., 1612.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    An Expanded Gene Catalog of Mouse Gut Metagenomes

    Zhu, J., Ren, H., Zhong, H., Li, Xiaoping, Zou, Y., Han, Mo, Li, M., Madsen, L., Kristiansen, Karsten & Xiao, L., 2021, In: mSphere. 6, 1, 12 p., e-01119-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa

    Zhu, J., Tian, L., Chen, P., Han, M., Song, L., Tong, X., Sun, X., Yang, F., Lin, Z., Liu, X., Liu, C., Wang, X., Lin, Y., Cai, K., Hou, Y., Xu, X., Yang, H., Wang, J., Kristiansen, K., Xiao, L. & 3 others, Zhang, T., Jia, H. & Jie, Zhuye, 2022, In: Genomics, Proteomics and Bioinformatics. 20, 2, p. 246-259

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A putative ABC transporter is involved in negative regulation of biofilm formation by Listeria monocytogenes.

    Zhu, X., Long, F., Chen, Y., Knoechel, Susanne, She, Q. & Shi, X., 2008, In: Applied and Environmental Microbiology. 74, 24, p. 7675-7683

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation

    Zhu, X., Liu, W., Lametsch, Rene, Aarestrup, F. M., Shi, C., She, Q., Shi, X. & Knoechel, Susanne, 2011, In: Foodborne Pathogens and Disease. 8, 4, p. 495-501 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions

    Zhu, X., Wirén, M., Sinha, I., Rasmussen, N. N., Linder, T., Holmberg, Steen, Ekwall, K. & Gustafsson, C. M., 2006, In: Molecular Cell. 22, 2, p. 169-78 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period

    Zhu, Z., Noel, S. J., Difford, G. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 8 Nov 2017, In: PLoS ONE. 12, 11, 24 p., e0187858.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows

    Zhu, Z., Kristensen, L., Difford, G. F., Poulsen, M., Noel, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 2018, In: Journal of Dairy Science. 101, 11, p. 9847-9862

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Comparative Proteomics and Secretomics Revealed Virulence and Antibiotic Resistance-Associated Factors in Vibrio parahaemolyticus Recovered From Commonly Consumed Aquatic Products

    Zhu, Z., Yang, L., Yu, P., Wang, Y., Peng, Xu & Chen, L., 2020, In: Frontiers in Microbiology. 11, 31 p., 1453.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Case report of a Li-Fraumeni syndrome-like phenotype with a de novo mutation in CHEK2

    Zhuang, X., Li, Y., Cao, H., Wang, T., Chen, J., Liu, J., Lin, L., Ye, R., Li, X., Liu, S., Li, W., Lv, Y., Zhang, J., He, C., Xu, X., Wang, Z., Huang, C., Liu, X. & Wang, L., 2016, In: Medicine (Baltimore). 95, 29, 6 p., 29.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Unparalleled details of soft tissues in a Cretaceous ant

    Zhuang, Y., Xu, W., KU, thw266, Mai, H., Li, X., He, H., Ran, H. & Liu, Y., 2022, In: BMC Ecology and Evolution. 22, 1, 10 p., 146.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Diversity and transmission of gut bacteria in Atta and Acromyrmex leaf-cutting ants during development

    Zhukova, M., Sapountzis, P., Schiøtt, M. & Boomsma, Jacobus J., 10 Oct 2017, In: Frontiers in Microbiology. 8, 14 p., 1942.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Phylogenomic analysis and metabolic role reconstruction of mutualistic Rhizobiales hindgut symbionts of Acromyrmex leaf-cutting ants

    Zhukova, M., Sapountzis, P., Schiott, M. & Boomsma, Jacobus J., 2022, In: FEMS Microbiology Ecology. 98, 9, 13 p., fiac084.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Caloplaca tornoënsis and Caloplaca spitsbergensis (lichenes). The two lichen species from the Taimyr Peninsula new to Russia

    Zhurbenko, M. P. & Søchting, Ulrik, 1993, In: Botanisk Journal. 78 (2), p. 118-120

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    MicroRNAs and potential target interactions in psoriasis

    Zibert, J. R., Løvendorf, M. B., Litman, Thomas, Olsen, Jørgen, Kaczkowski, B. & Skov, Lone, 2010, In: Journal of Dermatological Science. 58, 3, p. 177-185 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Hyperspectral Luminescence Imaging in Combination with Signal Deconvolution Enables Reliable Multi-Indicator-Based Chemical Sensing

    Zieger, S. E., Moßhammer, Maria, Kühl, Michael & Koren, K., 2021, In: ACS Sensors. 6, 1, p. 183-191

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Dichondra Repens (Convolvulaceae), a new alien species in the flora of Turkey

    Zielinski, J. & Tan, K., 2000, In: The Karaca Arboretum Magazine. 5, p. 119-124

    Research output: Contribution to journal › Journal article › Research

  62. Published

    Notes on the taxonomy of Genista januensis and G. lydia (Fabaceae)

    Zielinski, J., Tan, K. & Tomaszewski, D., 2004, In: Annales Botanici Fennici. 41(6), p. 453-457

    Research output: Contribution to journal › Journal article › Research

  63. Published

    Taxonomic status of the roses (Rosa) described by S.G. Dimitrov from Bulgaria

    Zielinski, J., Petrova, A. & Tan, K., 2004, In: Annales Botanici Fennici. 41, 6, p. 449-451

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Clematis austroanatolica (Ranunculaceae), an unusual new species from southern Anatolia, Turkey

    Zielinski, J. & Tan, K., 2011, In: Phytotaxa. 24, p. 28-32 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Leapfrogging into new territory: how Mascarene ridged frogs diversified across Africa and Madagascar to maintain their ecological niche

    Zimkus, B. M., Lawson, L. P., Barej, M. F., Barratt, C. D., Channing, A., Dash, K. M., Dehling, J. M., Du Preez, L., Gehring, P., Greenbaum, E., Gvoždík, V., Harvey, J., Kielgast, J., Kusamba, C., Nagy, Z. T., Pabijan, M., Penner, J., Rödel, M., Vences, M. & Lötters, S., Jan 2017, In: Molecular Phylogenetics and Evolution. 106, p. 254-269 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Circulating leptin and thyroid dysfunction.

    Zimmermann-Belsing, T., Brabant, G., Holst, Jens Juul & Feldt-Rasmussen, Ulla, 2003, In: European Journal of Endocrinology. 149, 4, p. 257-71 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    New floristic records in the Balkans 22: reports 160-168

    Zografidis, A., Tan, K. & Vold, G., 2013, In: Phytologia Balcanica. 19, 2, p. 298-303 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Linking the microbial community processes to the contamination by priority organic substances: in situ observations on coastal sediments of the Adriatic Sea (Italy)

    Zoppini, A., Ademollo, N., Amalfitano, S., Dellisanti, Walter, Lungarini, S., Miserocchi, S., Patrolecco, L. & Langone, L., 2015, Proceedings PERSEUS Scientific Conference “Integrated Marine Research in the Mediterranean and the Black Sea”. Brussels. p. 7-9 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  69. Published

    Microbial processes and organic priority substances in marine coastal sediments (Adriatic Sea, Italy)

    Zoppini, A., Ademollo, N., Amalfitano, S., Dellisanti, Walter, Lungarini, S., Miserocchi, S., Patrolecco, L. & Langone, L., 2015, EGU General Assembly Conference Abstracts. p. 10443 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  70. Published

    Effect of caloric restriction on BMI, gut microbiota, and blood amino acid levels in non-obese adults

    Zou, H., Wang, D., Ren, H., Cai, K., Chen, P., Fang, Chao, Shi, Z., Zhang, P., Wang, J., Yang, H. & Zhong, H., 2020, In: Nutrients. 12, 3, 15 p., 631.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Fecal microbiota transplantation results in bacterial strain displacement in patients with inflammatory bowel diseases

    Zou, M., Jie, Z., Cui, B., Wang, H., Feng, Q., Zou, Y., Zhang, X., Yang, H., Wang, J., Zhang, F. & Jia, H., 2020, In: FEBS Open Bio. 10, 1, p. 41-55

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Free Energy Profile and Kinetics of Coupled Folding and Binding of the Intrinsically Disordered Protein p53 with MDM2

    Zou, R., Zhou, Y., Wang, Y., Kuang, G., Ågren, H., Wu, J. & Tu, Y., 2020, In: Journal of Chemical Information and Modeling. 60, 3, p. 1551-1558 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov

    Zou, Y., Xue, W., Lin, X., Lv, M., Luo, G., Dai, Y., Sun, H., Liu, S., Sun, C., Hu, T. & Xiao, L., 2021, In: Systematic and Applied Microbiology. 44, 3, 8 p., 126201.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

    Zou, Y., Xue, W., Luo, G., Deng, Z., Qin, P., Guo, R., Sun, H., Xia, Y., Liang, S., Dai, Y., Wan, D., Jiang, R., Su, L., Feng, Q., Jie, Z., Guo, T., Xia, Z., Liu, C., Yu, J., Lin, Y. & 11 others, Tang, S., Huo, G., Xu, X., Hou, Y., Liu, X., Wang, J., Yang, H., Kristiansen, Karsten, Li, J., Jia, H. & Xiao, L., 2019, In: Nature Biotechnology. 37, 2, p. 179-185

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Taxonomic Description and Genome Sequence of Christensenella intestinihominis sp. nov., a Novel Cholesterol-Lowering Bacterium Isolated From Human Gut

    Zou, Y., Xue, W., Lin, X., Hu, T., Liu, S., Sun, C., Luo, G., Lv, M., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Frontiers in Microbiology. 12, 13 p., 632361.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Characterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces

    Zou, Y., Lin, X., Xue, W., Tuo, L., Chen, M., Chen, X., Sun, C., Li, F., Liu, S., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Scientific Reports. 11, 13 p., 11340.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Characteristics of Growth and Development of Different Jerusalem Artichoke Cultivars

    Zubr, J. & Pedersen, H. S., 1993, In: Studies in Plant Science. 3, p. 9

    Research output: Contribution to journal › Journal article › Research

  78. Published

    The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes

    Zuo, Zhangli Thomsen, Roux, M. E., Sæmundsson, H. P., Müller, M., Bosch, S. M. & Petersen, Morten, 2021, In: FEBS Letters. 595, 2, p. 253-263 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    PAT mRNA decapping factors are required for proper development in Arabidopsis

    Zuo, Zhangli Thomsen, Roux, M. E., Dagdas, Y. F., Rodriguez, Eleazar & Petersen, Morten, 2024, In: FEBS Letters. 598, 9, p. 1008-1021 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    mRNA Decapping Factors LSM1 and PAT Paralogs Are Involved in Turnip Mosaic Virus Viral Infection

    Zuo, Zhangli Thomsen, Roux, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Molecular plant-microbe interactions : MPMI. 35, 2, p. 125-130 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Functional study of PAT mRNA decapping factors in Arabidopsis

    Zuo, Zhangli Thomsen, 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  82. Published

    The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development

    Zuo, Zhangli Thomsen, Roux, M. E., Chevalier, J. R., Dagdas, Y. F., Yamashino, T., Højgaard, S. D., Knight, E., Østergaard, L., Rodriguez, Eleazar & Petersen, Morten, 2023, In: Life Science Alliance. 6, 9, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers

    Zupancic, J., Raghupathi, P. K., Houf, K., Burmølle, Mette, Sørensen, Søren Johannes & Gunde-Cimerman, N., 2018, In: Frontiers in Microbiology. 9, 13 p., 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    A dual-reporter system for investigating and optimizing protein translation and folding in E. coli

    Zutz, A., Hamborg, L., Pedersen, L. E., Kassem, M. M., Papaleo, E., Koza, A., Herrgård, M. J., Ingemann Jensen, S., Teilum, Kaare, Lindorff-Larsen, Kresten & Nielsen, A. T., 2021, In: Nature Communications. 12, 15 p., 6093.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Symbiotic Plant Biomass Decomposition in Fungus-Growing Termites

    da Costa, R. R., Hu, H., Li, H. & Poulsen, Michael, 2019, In: Insects. 10, 4, 15 p., 87.

    Research output: Contribution to journal › Review › Research › peer-review

  86. Published

    Can interaction specificity in the fungus-farming termite symbiosis be explained by nutritional requirements of the fungal crop?

    da Costa, R. R., Vreeburg, S. M. E., Shik, Jonathan Z., Aanen, D. K. & Poulsen, Michael, 2019, In: Fungal Ecology. 38, p. 54-61

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

    Rodrigues da Fonseca, Rute Andreia, Urena, I., Afonso, S., Pires, A. E., Jørsboe, E., Chikhi, L. & Ginja, C., 2019, In: BMC Genomics. 20, p. 1-13 334.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia

    Rodrigues da Fonseca, Rute Andreia, Campos, P. F., Rey de la Iglesia, Alba, Barroso, G. V., Bergeron, Lucie Adrienne, Nande, M., Tuya, F., Abidli, S., Pérez, M., Riveiro, I., Carrera, P., Jurado-Ruzafa, A., Santamaría, M. T. G., Faria, R., Machado, A. M., Fonseca, M. M., Froufe, E. & Castro, L. F. C., 2024, In: Genes. 15, 2, 15 p., 170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices

    da Piedade, I., Tang, M. E. & Elemento, O., 2009, In: BMC Bioinformatics. 10, 388, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Computational approches to discover and characterize core elements and trascription factr binding sites in eukaryotes

    da Piedade, I., 2009, Museum Tusculanum. 130 p.

    Research output: Book/Report › Ph.D. thesis › Research

  92. Published

    pCramoll and rCramoll as new preventive agents against the oxidative dysfunction induced by hydrogen peroxide

    da Silva, L. C. N., Pereira Alves, N. M., Accioly Brelaz de Castro, M. C., Maciel Higino, T. M., Albuquerque da Cunha, C. R., Alves Pereira, V. R., Nogueira da Paz, N. V., Breitenbach Barroso Coelho, L. C., dos Santos Correia, M. T. & Bressan Queiroz de Figueiredo, R. C., 2015, In: Oxidative Medicine and Cellular Longevity. 2015, 9 p., 520872.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Computational Studies of Drug Resistance: Investigating Binding Affinities and Structural Ensembles of Proteins

    da Silva Martins, J. M., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  94. Published

    Glucagon-like peptide-1, but not glucose-dependent insulinotropic peptide, inhibits glucagon secretion via somatostatin (receptor subtype 2) in the perfused rat pancreas

    de, H. J., Rasmussen, C., Coy, D. H. & Holst, Jens Juul, 2008, In: Diabetologia. 51, 12, p. 2263-2270 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    A microsensor study of light enhanced Ca2+ uptake and photosynthesis in the reef-building hermatypic coral Favia sp.

    de Beer, D., Kühl, Michael, Stambler, N. & Vaki, L., 2000, In: Marine Ecology Progress Series. 194, p. 75-85 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Interfacial processes and activities in biofilms and microbial mats.

    de Beer, D. & Kühl, Michael, 2001, The Benthic Boundary Layer: Transport Processes and Biogeochemistry. Boudreau, B. P. & Jørgensen, B. B. (eds.). Oxford: Oxford University Press, p. 374-394

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  97. Published

    Reversal of resistance by GF120918 in cell lines expressing the ABC half-transporter, MXR

    de Bruin, M., Miyake, K., Litman, Thomas, Robey, R. & Bates, S. E., 15 Nov 1999, In: Cancer Letters. 146, 2, p. 117-26 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Has substrate-dependent co-evolution of enzyme function occured in the attine ant-fungus symbiosis

    de Fine Licht, Henrik Hjarvard, Schiøtt, M. & Boomsma, Jacobus J., 2007. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  99. Published

    Conflict and cooperation between fungi and termites in Macrotermes natalensis

    de Fine Licht, Henrik Hjarvard, Boomsma, Jacobus J. & Aanen, D. K., 2006. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  100. Published

    Presumptive horizontal symbiont transmission in the fungus-growing termite Macrotermes natalensis

    de Fine Licht, Henrik Hjarvard, Boomsma, Jacobus J. & Aanen, D. K., 2006, In: Molecular Ecology. 15, 11, p. 3131-3138

    Research output: Contribution to journal › Journal article › Research › peer-review

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