Department of Biology

 

 
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  1. Published

    demoniche – an R-package for simulating spatially-explicit population dynamics

    Nenzén, H. K., Swab, R. M., Keith, D. A. & Bastos Araujo, M., 2012, In: Ecography. 35, 7, p. 577-580 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    fastNGSadmix: admixture proportions and principal component analysis of a single NGS sample

    Jørsboe, E., Hanghøj, Kristian Ebbesen & Albrechtsen, Anders, 1 Oct 2017, In: Bioinformatics. 33, 19, p. 3148-3150 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    gamma c-signaling cytokines induce a regulatory T cell phenotype in malignant CD4(+) T lymphocytes

    Kasprzycka, M., Zhang, Q., Witkiewicz, A., Marzec, Michal Tomasz, Potoczek, M., Liu, X., Wang, H. Y., Milone, M., Basu, S., Mauger, J., Choi, J. K., Abrams, J. T., Hou, J. S., Rook, A. H., Vonderheid, E., Woetmann, A., Ødum, Niels & Wasik, M. A., 15 Aug 2008, In: Journal of Immunology. 181, 4, p. 2506-2512

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    hP1.B, a human P-domain peptide homologous with rat intestinal trefoil factor, is expressed also in the ulcer-associated cell lineage and the uterus

    Hauser, Frank, Poulsom, R., Chinery, R., Rogers, L. A., Hanby, A. M., Wright, N. A. & Hoffmann, W., 1 Aug 1993, In: Proceedings of the National Academy of Sciences of the United States of America. 90, 15, p. 6961-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    hyperTRIBER: a flexible R package for the analysis of differential RNA editing

    Rennie, Sarah, Magnusson, D. H. & Andersson, Robin, 2021, 12 p.

    Research output: Working paper › Preprint

  6. Published

    lactate transport studied in sarcolemmal giant vesicles from rats: effect og training

    Pilegaard, Henriette, Juel, C. & Wibrand, F., 1993, In: Am. J. Physiol.. 264, 2, p. E156-E160

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site

    Parker, M. T., Soanes, B. K., Kusakina, J., Larrieu, A., Knop, K., Joy, N., Breidenbach, F., Sherwood, Anna, Barton, G. J., Fica, S. M., Davies, B. H. & Simpson, G. G., 2022, In: eLife. 11, 34 p., 78808.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    m6A-dependent biogenesis of circular RNAs in male germ cells

    Tang, C., Xie, Y., Yu, T., Liu, N., Wang, Z., Woolsey, R. J., Tang, Y., Zhang, X., Qin, W., Zhang, Y., Song, G., Zheng, W., Wang, J., Chen, W., Wei, X., Xie, Z., Klukovich, R., Zheng, H., Quilici, D. R. & Yan, W., 2020, In: Cell Research. 30, p. 211-228 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    mCysLT1 receptor mediated activation of various K+ channels by co-expression in Xenopus laevis oocytes

    Wulff, T., Hougaard, C., Klærke, D. A. & Hoffmann, E. K., 2004, In: Acta Physiologica (Print Edition). A45-A163, p. A139

    Research output: Contribution to journal › Conference article › Research › peer-review

  10. Published

    mRNA Decapping Factors LSM1 and PAT Paralogs Are Involved in Turnip Mosaic Virus Viral Infection

    Zuo, Zhangli Thomsen, Roux, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Molecular plant-microbe interactions : MPMI. 35, 2, p. 125-130 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    mRNA decay of most arabidopsis miRNA targets requires slicer activity of AGO1

    Arribas Hernandez, Laura, Kielpinski, L. J. & Brodersen, Peter, 2016, In: Plant Physiology. 171, 4, p. 2620-2632 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    mRNA pseudoknot structures can act as ribosomal roadblocks

    Hansen, J. T., Oddershede, L. B. & Sørensen, Michael Askvad, 2012, In: Nucleic Acids Research. 40, 1, p. 303-313 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    mTOR complex 2 phosphorylates IMP1 cotranslationally to promote IGF2 production and the proliferation of mouse embryonic fibroblasts.

    Dai, N., Christiansen, Jan, Nielsen, F. & Avruch, J., 2013, In: Genes & Development. 27, 3, p. 301-312 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    mTOR ensures increased release and reduced uptake of the organic osmolyte taurine under hypoosmotic conditions in mouse fibroblasts

    Lambert, Ian Henry, Jensen, J. V. & Pedersen, Per Amstrup, 2014, In: American Journal of Physiology: Cell Physiology. 306, 11, p. C1028-C1040 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences

    Menzel, K. P., Stadler, P. F. & Gorodkin, Jan, 2011, In: Bioinformatics. 27, 3, p. 317-325 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    miR-449 inhibits cell proliferation and is down-regulated in gastric cancer

    Bou Kheir, T., Futoma-Kazmierczak, E., Jacobsen, A., Krogh, Anders, Bardram, L., Hother, C., Grønbæk, Kirsten, Federspiel, B., Lund, Anders H. & Friis-Hansen, Lennart Jan, 2011, In: Molecular Cancer. 10, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer

    Pan, Y., Robertson, G., Pedersen, L., Lim, E., Hernandez-Herrera, A., Rowat, A. C., Patil, S. L., Chan, C. K., Wen, Y., Zhang, X., Basu-Roy, U., Mansukhani, A., Chu, A., Sipahimalani, P., Bowlby, R., Brooks, D., Thiessen, N., Coarfa, C., Ma, Y., Moore, R. A. & 8 others, Schein, J. E., Mungall, A. J., Liu, J., Pecot, C. V., Sood, A. K., Jones, S. J. M., Marra, M. A. & Gunaratne, P. H., 2016, In: OncoTarget. 7, 18, p. 25930-25948 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    miRMaid: a unified programming interface for microRNA data resources

    Jacobsen, A., Krogh, Anders, Kauppinen, S. & Lindow, M., 2010, In: BMC Bioinformatics. 11, Suppl 1, p. 29

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    microRNA-101 is a potent inhibitor of autophagy

    Frankel, Lisa, Wen, J., Lees, M., Høyer-Hansen, M., Farkas, T., Krogh, Anders, Jäättelä, M. & Lund, Anders H., 2011, In: E M B O Journal. 30, p. 4628-4641 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    microRNA-143 down-regulates Hexokinase 2 in colon cancer cells

    Gregersen, Lea Haarup, Jacobsen, A., Frankel, Lisa, Wen, J., Krogh, Anders & Lund, Anders H., 2012, In: B M C Cancer. 12, 232, 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-κB by targeting CARD10 and COPS8 in gastric cancer

    Crone, S. G., Jacobsen, A., Federspiel, B., Bardram, L., Krogh, Anders, Lund, Anders H. & Friis-Hansen, Lennart Jan, 2012, In: Molecular Cancer. 11, 71, p. 71 31 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    ncRNAs and polyphenols: new therapeutic strategies for hypertension

    Shirazi-Tehrani, E., Chamasemani, A., Firouzabadi, N. & Mousaei, M., 2022, In: RNA Biology. 19, 1, p. 575-587 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks [version 2; peer review: 2 approved]

    Pai, S., Weber, P., Isserlin, R., Kaka, H., Hui, S., Shah, M. A., Giudice, L., Giugno, R., Nøhr, A. K., Baumbach, J. & Bader, G. D., 2021, In: F1000Research. 9, 42 p., 1239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    p21-ras effector domain mutants constructed by "cassette" mutagenesis.

    Stone, J. C., Vass, W. C., Willumsen, Berthe Marie & Lowy, D. R., 1988, In: Molecular and Cellular Biology. 8, 8, p. 3565-9 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    p53 regulates expression of uncoupling protein 1 through binding and repression of PPARγ coactivator-1α

    Hallenborg, P., Fjære, E., Liaset, B., Petersen, R. K., Murano, I., Sonne, Si Brask, Falkerslev, M., Winther, Sally, Jensen, Benjamin Anderschou Holbech, Ma, Tao, Hansen, Jacob B., Cinti, S., Blagoev, B., Madsen, L. & Kristiansen, Karsten, 2016, In: American Journal of Physiology: Endocrinology and Metabolism. 310, 2, p. E116-128 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    pCramoll and rCramoll as new preventive agents against the oxidative dysfunction induced by hydrogen peroxide

    da Silva, L. C. N., Pereira Alves, N. M., Accioly Brelaz de Castro, M. C., Maciel Higino, T. M., Albuquerque da Cunha, C. R., Alves Pereira, V. R., Nogueira da Paz, N. V., Breitenbach Barroso Coelho, L. C., dos Santos Correia, M. T. & Bressan Queiroz de Figueiredo, R. C., 2015, In: Oxidative Medicine and Cellular Longevity. 2015, 9 p., 520872.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    pH Regulatory Transporters in Pancreatic Ductal Adenocarcinoma

    Kong, S. C., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  28. Published

    pH dependence of amyloid-β-Cu(II) binding and oligomerization kinetics

    Pedersen, J. T., Borg, C. B., Teilum, Kaare & Hemmingsen, Lars Bo Stegeager, 2014, In: Journal of Biological Inorganic Chemistry. 19, Suppl 2, p. S755 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  29. Published

    pH regulation in sensitive and multidrug resistant Ehrlich ascites tumor cells

    Litman, Thomas, Pedersen, S. F., Kramhøft, B., Skovsgaard, T. & Hoffmann, E. K., 1998, In: Cellular Physiology and Biochemistry. 8, 3, p. 138-50 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    pH regulation in sensitive and multidrug resistant Ehrlich ascites tumor cells

    Litman, Thomas, Pedersen, Stine Helene Falsig, Kramhøft, B., Skovsgaard, T. & Hoffmann, E. K., 1998, In: Cell. Physiol. Biochem.. 8, p. 138-150

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    pH-Regulatory Proteins as Potential Targets in Breast Cancer

    Andersen, Anne Poder, 2016, Department of Biology, Faculty of Science, University of Copenhagen. 187 p.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    pH-dependent effects of 2,4-dinitrophenol (DNP) on proliferation, endocytosis, fine structure and DNP resistance in Tetrahymena

    Nilsson, J. R., 1995, In: Journal of Eukaryotic Microbiology. Vol 42, p. 248-255

    Research output: Contribution to journal › Journal article › Research

  33. Published

    pH-dependent processing of yeast procarboxypeptidase Y by proteinase A in vivo and in vitro

    Sørensen, S. O., van den Hazel, H. B., Kielland-Brandt, M. & Winther, Jakob R., 1994, In: European Journal of Biochemistry. 220, 1, p. 19-27 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    pH-sensitive K+ channel TREK-1 is a novel target in pancreatic cancer

    Sauter, D. R. P., Sørensen, Christiane Elisabeth, Rapedius, M., Brüggemann, A. & Novak, Ivana, 2016, In: B B A - Molecular Basis of Disease. 1862, 10, p. 1994-2003 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    pHi regulation in Ehrlich mouse ascites tumor cells: Role of sodium-dependent and sodium-independent chloride-bicarbonate exchange

    Kramhøft, B., Hoffmann, E. K. & Simonsen, L. O., 1994, In: J. Membrane Biology. 138, p. 121-132

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    pXOOY: A dual-function vector for expression of membrane proteins in Saccharomyces cerevisiae and Xenopus laevis oocytes

    Vold, Victoria Amstrup, Glanville, S., Klærke, Dan Arne & Pedersen, Per Amstrup, 2023, In: PLoS ONE. 18, 2, 16 p., e0281868.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data

    Morin, S., Linnet, T. E., Lescanne, M., Schanda, P., Thompson, G. S., Tollinger, M., Teilum, Kaare, Gagne, S., Marion, D., Griesinger, C., Blackledge, M. & d’Auvergne, E. J., 2014, In: Bioinformatics. 30, 15, p. 2219-2220 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments

    Wen, B., Xu, S., Sheynkman, G. M., Feng, Q., Lin, L., Wang, Q., Xu, X., Wang, J. & Liu, S., 2014, In: Bioinformatics. 30, 21, p. 3136-3138 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    scVAE: variational auto-encoders for single-cell gene expression data

    Grønbech, Christopher Heje, Vording, M. F., Timshel, P., Sønderby, C. K., Pers, Tune H & Winther, Ole, 2020, In: Bioinformatics. 36, 16, p. 4415-4422 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

    Vitting-Seerup, K., Porse, Bo Torben, Sandelin, Albin Gustav & Waage, J., 2014, In: B M C Bioinformatics. 15, p. 1-7 7 p., 81.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    tRNAs Are Stable After All: Pitfalls in Quantification of tRNA from Starved Escherichia coli Cultures Exposed by Validation of RNA Purification Methods

    Prossliner, T., Agrawal, S., Heidemann, Ditte Fogh, Sorensen, M. A. A. & Svenningsen, Sine Lo, 2023, In: mBio. 14, 1, 18 p., e02805-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    the Relationsship between the Behavioural Response of Lactating Sows to Humans and the Mortality of their Piglets

    Pedersen, V., 1997, In: Proceedings of the 31st. international congress of the ISAE, 13-16 August.. p. 1

    Research output: Contribution to journal › Journal article › Research

  43. Published

    vcfpp: a C++ API for rapid processing of the variant call format

    Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    xP1 and xP4. P-domain peptides expressed in Xenopus laevis stomach mucosa

    Hauser, Frank & Hoffmann, W., 5 Nov 1991, In: The Journal of Biological Chemistry. 266, 31, p. 21306-9 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    xP2, a new member of the P-domain peptide family of potential growth factors, is synthesized in Xenopus laevis skin

    Hauser, Frank, Roeben, C. & Hoffmann, W., 15 Jul 1992, In: The Journal of Biological Chemistry. 267, 20, p. 14451-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

      Agarica - Mykologisk tisskrift utgitt av Norgers sopp- og nyttevekstforbund

    Læssøe, Thomas, 2007, In: Svampe. 56, p. 19-19 1 p.

    Research output: Contribution to journal › Literature review › Research

  47. Published

     An integrative study on neurogenesis, myogenesis, and gene expression in polychaete annelids

    Brinkmann, N., 2009, Biologisk Institut: Museum Tusculanum.

    Research output: Book/Report › Ph.D. thesis › Research

  48. Published

     An interdisciplinary approach for studying greenhouse gases at the landscape scale

    Sitaula, B., Warner, W., Bakken, L., Hargreaves, K., Klemedtsson, L., Sitaula, J., Christensen, Søren & Priemé, Anders, 1995, In: Norwegian Journal of Agricultural Sciences. 9, 3-4, p. 189-209 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

     Comparative neuromuscular development in the flatworm-like phyla Acoela and Platyhelminthes

    Semmler, H., 2009, Biologisk Institut: Museum Tusculanum.

    Research output: Book/Report › Ph.D. thesis › Research

  50. Published

     Distribution and composition of microbial populations in landfill leachate contaminated aquifer (Grindsted, Denmark)

    Ludvigsen, L., Albrechtsen, H., Ringelberg, D., Ekelund, Flemming & Christensen, T., 1999, In: Microbial Ecology. 37, 3, p. 197-207

    Research output: Contribution to journal › Journal article › Research › peer-review

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