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  1. Published

    The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients

    Holden, M. T. G., Seth-Smith, H. M. B., Crossman, L. C., Sebaihia, M., Bentley, S. D., Cerdeño-Tárraga, A. M., Thomson, N. R., Bason, N., Quail, M. A., Sharp, S., Cherevach, I., Churcher, C., Goodhead, I., Hauser, H., Holroyd, N., Mungall, K., Scott, P., Walker, D., White, B., Rose, H. & 12 others, Iversen, P., Mil-Homens, D., Rocha, E. P. C., Fialho, A. M., Baldwin, A., Dowson, C., Barrell, B. G., Govan, J. R., Vandamme, P., Hart, C. A., Mahenthiralingam, E. & Parkhill, J., 2009, In: Journal of Bacteriology. 191, 1, p. 261-77 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C

    Brügger, K., Chen, L., Stark, M., Zibat, A., Redder, P., Ruepp, A., Awayez, M., She, Q., Garrett, Roger Antony & Klenk, H., 2007, In: Archaea. 2, 2, p. 127-35 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The genome of a Late Pleistocene human from a Clovis burial site in western Montana

    Rasmussen, M., Anzick, S. L., Waters, M. R., Skoglund, P., DeGiorgio, M., Stafford jr., T., Rasmussen, S., Moltke, I., Albrechtsen, A., Doyle, S. M., Poznik, G. D., Gudmundsdottir, V., Yadav, R., Malaspinas, A. S., White, S. S., Allentoft, M. E., Cornejo, O. E., Tambets, K., Eriksson, A., Heintzman, P. D. & 22 others, Karmin, M., Korneliussen, Thorfinn Sand, Meltzer, D. J., Pierre, T. L., Stenderup, Jesper Tandberg, Saag, L., Warmuth, V. M., Lopes, M. C., Malhi, R. S., Brunak, S., Sicheritz-Pontén, T., Barnes, I., Collins, M., Orlando, L. A. A., Balloux, F., Manica, A., Gupta, R., Metspalu, M., Bustamante, C. D., Jakobsson, M., Nielsen, R. & Willerslev, Eske, 2014, In: Nature. 506, 7487, p. 225-229 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The genome of a Mongolian individual reveals the genetic imprints of Mongolians on modern human populations

    Bai, H., Guo, X., Zhang, D., Narisu, N., Bu, J., Jirimutu, J., Liang, F., Zhao, X., Xing, Y., Wang, D., Li, T., Zhang, Y., Guan, B., Yang, X., Yang, Z., Shuangshan, S., Su, Z., Wu, H., Li, W., Chen, M. & 18 others, Zhu, S., Bayinnamula, B., Chang, Y., Gao, Y., Lan, T., Suyalatu, S., Huang, H., Su, Y., Chen, Y., Li, W., Yang, X., Feng, Q., Wang, J., Yang, H., Wang, J., Wu, Q., Yin, Y. & Zhou, H., 2014, In: Genome Biology and Evolution. 6, 12, p. 3122-3136 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads

    Wang, Z., Hobson, N., Galindo, L., Zhu, S., Shi, D., McDill, J., Yang, L., Hawkins, S., Neutelings, G., Datla, R., Lambert, G., Galbraith, D. W., Grassa, C. J., Geraldes, A., Cronk, Q. C., Cullis, C., Dash, P. K., Kumar, P. A., Cloutier, S., Sharpe, A. G. & 3 others, Wong, G. K., Wang, J. & Deyholos, M. K., 2012, In: Plant Journal. 72, 3, p. 461-473 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    The genome of the clonal raider ant Cerapachys biroi

    Oxley, P. R., Ji, L., Fetter-Pruneda, I., McKenzie, S. K., Li, C., Hu, H., KU, thw266 & Kronauer, D. J. C., 2014, In: Current Biology. 24, 4, p. 451-458 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The genome of the cucumber, Cucumis sativus L

    Huang, S., Li, R., Zhang, Z., Li, L., Gu, X., Fan, W., Lucas, W. J., Wang, X., Xie, B., Ni, P., Ren, Y., Zhu, H., Li, J., Lin, K., Jin, W., Fei, Z., Li, G., Staub, J., Kilian, A., van der Vossen, E. A. G. & 76 others, Wu, Y., Guo, J., He, J., Jia, Z., Ren, Y., Tian, G., Lu, Y., Ruan, J., Qian, W., Wang, M., Huang, Q., Li, B., Xuan, Z., Cao, J., Asan, Wu, Z., Zhang, J., Cai, Q., Bai, Y., Zhao, B., Han, Y., Li, Y., Li, X., Wang, S., Shi, Q., Liu, S., Cho, W. K., Kim, J., Xu, Y., Heller-Uszynska, K., Miao, H., Cheng, Z., Zhang, S., Wu, J., Yang, Y., Kang, H., Li, M., Liang, H., Ren, X., Shi, Z., Wen, M., Jian, M., Yang, H., Zhang, G., Yang, Z., Chen, R., Liu, S., Li, J., Ma, L., Liu, H., Zhou, Y., Zhao, J., Fang, X., Li, G., Fang, L., Li, Y., Liu, D., Zheng, H., Zhang, Y., Qin, N., Li, Z., Yang, G., Yang, S., Bolund, L., Kristiansen, Karsten, Zheng, H., Li, S., Zhang, X., Yang, H., Wang, J., Sun, R., Zhang, B., Jiang, S., Wang, J., Du, Y. & Li, S., 2009, In: Nature Genetics. 41, 12, p. 1275-81 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The genome of the fire ant Solenopsis invicta

    Wurm, Y., Wang, J., Riba-Grognuz, O., Corona, M., Nygaard, S., Hunt, B. G., Ingram, K. K., Falquet, L., Nipitwattanaphon, M., Gotzek, D., Dijkstra, M. B., Oettler, J., Comtesse, F., Shih, C-J., Wu, W-J., Yang, C-C., Thomas, J., Beaudoing, E., Pradervand, S., Flegel, V. & 18 others, Cook, E. D., Fabbretti, R., Stockinger, H., Long, L., Farmerie, W. G., Oakey, J., Boomsma, Jacobus J., Pamilo, P., Yi, S. V., Heinze, J., Goodisman, M. A. D., Farinelli, L., Harshman, K., Hulo, N., Cerutti, L., Xenarios, I., Shoemaker, D. & Keller, L., 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 14, p. 5679-84 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate

    Pan, H., Yu, H., Ravi, V., Li, C., Lee, A. P., Lian, M. M., Tay, B., Brenner, S., Wang, J., Yang, H., KU, thw266 & Venkatesh, B., 2016, In: GigaScience. 5, 12 p., 36.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming

    Nygaard, S., Zhang, G., Schiøtt, M., Li, C., Wurm, Y., Hu, H., Zhou, J., Ji, L., Qiu, F., Rasmussen, M., Pan, H., Hauser, Frank, Krogh, Anders, Grimmelikhuijzen, Cornelis (Cok), Wang, J. & Boomsma, Jacobus J., 2011, In: Genome Research. 21, 8, p. 1339-1348 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    The genome of the mesopolyploid crop species Brassica rapa

    Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., Bai, Y., Mun, J-H., Bancroft, I., Cheng, F., Huang, S., Li, X., Hua, W., Wang, J., Wang, X., Freeling, M., Pires, J. C., Paterson, A., Chalhoub, B., Wang, B. & 79 others, Hayward, A., Sharpe, A., Park, B., Weisshaar, B., Liu, B., Li, B., Liu, B., Tong, C., Song, C., Duran, C., Peng, C., Geng, C., Koh, C., Lin, C., Edwards, D., Mu, D., Shen, D., Soumpourou, E., Li, F., Fraser, F., Conant, G., Lassalle, G., King, G., Bonnema, G., Tang, H., Wang, H., Belcram, H., Zhou, H., Hirakawa, H., Abe, H., Guo, H., Wang, H., Jin, H., Parkin, I., Batley, J., Kim, J., Just, J., Li, J., Xu, J., Deng, J., Kim, J. H., Li, J., Yu, J., Meng, J., Wang, J., Min, J., Poulain, J., Hatakeyama, K., Wu, K., Wang, L., Fang, L., Trick, M., Links, M., Zhao, M., Jin, M., Ramchiary, N., Drou, N., Berkman, P., Cai, Q., Huang, Q., Li, R., Tabata, S., Cheng, S., Zhang, S., Zhang, S., Huang, S., Sato, S., Sun, S., Kwon, S., Choi, S., Lee, T., Fan, W., Zhao, X., Tan, X., Xu, X., Wang, Y., Qiu, Y., Yin, Y. & Li, Y., 2011, In: Nature Genetics. 43, 10, p. 1035-1039 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  12. Published

    The genome of the model beetle and pest Tribolium castaneum.

    Richards, S., Principal investigators, Gibbs, R. A., Weinstock, G. M., White paper, Brown, S. J., Denell, R., Beeman, R. W., Gibbs, R., Analysis leaders, Beeman, R. W., Brown, S. J., Bucher, G., Friedrich, M., Grimmelikhuijzen, C. J. P., Klingler, M., Lorenzen, M., Richards, S., Roth, S., Schröder, R. & 56 others, Tautz, D., Zdobnov, E. M., DNA sequence and global analysis: DNA sequencing, D. S. A. G. A. D. S., Muzny, D., Gibbs, R. A., Weinstock, G. M., Attaway, T., Bell, S., Buhay, C. J., Chandrabose, M. N., Chavez, D., Clerk-Blankenburg, K. P., Cree, A., Dao, M., Davis, C., Chacko, J., Dinh, H., Dugan-Rocha, S., Fowler, G., Garner, T. T., Garnes, J., Gnirke, A., Hawes, A., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., EST sequencing, E. S., genome assembly, G. A., G+C content, G. C., repetitive DNA, transposons and telomeres, R. D. T. A. T., gene prediction and consensus gene set, G. P. A. C. G. S., global gene content analysis, G. G. C. A., Developmental processes and signalling pathways, D. P. A. S. P., Pest biology, senses, Medea and RNAi: ligand gated ion channels, P. B. S. M. A. R. L. G. I. C., oxidative phosphorylation, O. P., P450 genes, P. G., chitin and cuticular proteins, C. A. C. P., digestive proteinases, D. P., immunity, I., neurohormones and GPCRs, N. A. G., Grimmelikhuijzen, Cornelis (Cok), Hauser, Frank, Cazzamali, G., Williamson, M., Tribolium Genome Sequencing Consortium, T. G. S. C., Project leader, P. L., neuropeptide processing enzymes, N. P. E., opsins, O., odorant receptors and gustatory receptors, O. R. A. G. R., odorant binding and chemosensory proteins, O. B. A. C. P., Medea, M. & systemic RNAi, S. R., 2008, In: Nature. 452, 7190, p. 949-955 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    The genome of the pear (Pyrus bretschneideri Rehd.)

    Wu, J., Wang, Z., Shi, Z., Zhang, S., Ming, R., Zhu, S., Khan, M. A., Tao, S., Korban, S. S., Wang, H., Chen, N. J., Nishio, T., Xu, X., Cong, L., Qi, K., Huang, X., Wang, Y., Zhao, X., Wu, J., Deng, C. & 40 others, Gou, C., Zhou, W., Yin, H., Qin, G., Sha, Y., Tao, Y., Chen, H., Yang, Y., Song, Y., Zhan, D., Wang, J., Li, L., Dai, M., Gu, C., Wang, Y., Shi, D., Wang, X., Zhang, H., Zeng, L., Zheng, D., Wang, C., Chen, M., Wang, G., Xie, L., Sovero, V., Sha, S., Huang, W., Zhang, S., Zhang, M., Sun, J., Xu, L., Li, Y., Liu, X., Li, Q., Shen, J., Wang, J., Paull, R., Bennetzen, J., Wang, J. & Zhang, S., 2013, In: Genome Research. 23, 2, p. 396-408 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    The genome of the simian and human malaria parasite Plasmodium knowlesi

    Pain, A., Böhme, U., Berry, A. E., Mungall, K., Finn, R. D., Jackson, A. P., Mourier, T., Mistry, J., Pasini, E. M., Aslett, M. A., Balasubrammaniam, S., Borgwardt, K., Brooks, K., Carret, C., Carver, T. J., Cherevach, I., Chillingworth, T., Clark, T. G., Galinski, M. R., Hall, N. & 34 others, Harper, D., Harris, D., Hauser, H., Ivens, A., Janssen, C. S., Keane, T., Larke, N., Lapp, S., Marti, M., Moule, S., Meyer, I. M., Ormond, D., Peters, N., Sanders, M., Sanders, S., Sargeant, T. J., Simmonds, M., Smith, F., Squares, R., Thurston, S., Tivey, A. R., Walker, D., White, B., Zuiderwijk, E., Churcher, C., Quail, M. A., Cowman, A. F., Turner, C. M. R., Rajandream, M. A., Kocken, C. H. M., Thomas, A. W., Newbold, C. I., Barrell, B. G. & Berriman, M., 2008, In: Nature. 455, 7214, p. 799-803 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The genome of the social amoeba Dictyostelium discoideum.

    Eichinger, L., Pachebat, J. A., Glöckner, G., Rajandream, M-A., Sucgang, R., Berriman, M., Song, J., Olsen, R., Szafranski, K., Xu, Q., Tunggal, B., Kummerfeld, S., Madera, M., Konfortov, B. A., Rivero, F., Bankier, A. T., Lehmann, R., Hamlin, N., Davies, R., Gaudet, P. & 77 others, Fey, P., Pilcher, K., Chen, G., Saunders, D., Sodergren, E., Davis, P., Kerhornou, A., Nie, X., Hall, N., Anjard, C., Hemphill, L., Bason, N., Farbrother, P., Desany, B., Just, E., Morio, T., Rost, R., Churcher, C., Cooper, J., Haydock, S., van Driessche, N., Cronin, A., Goodhead, I., Muzny, D., Mourier, T., Pain, A., Lu, M., Harper, D., Lindsay, R., Hauser, H., James, K., Quiles, M., Madan Babu, M., Saito, T., Buchrieser, C., Wardroper, A., Felder, M., Thangavelu, M., Johnson, D., Knights, A., Loulseged, H., Mungall, K., Oliver, K., Price, C., Quail, M. A., Urushihara, H., Hernandez, J., Rabbinowitsch, E., Steffen, D., Sanders, M., Ma, J., Kohara, Y., Sharp, S., Simmonds, M., Spiegler, S., Tivey, A., Sugano, S., White, B., Walker, D., Woodward, J., Winckler, T., Tanaka, Y., Shaulsky, G., Schleicher, M., Weinstock, G., Rosenthal, A., Cox, E. C., Chisholm, R. L., Gibbs, R., Loomis, W. F., Platzer, M., Kay, R. R., Williams, J., Dear, P. H., Noegel, A. A., Barrell, B. & Kuspa, A., 2005, In: Nature. 435, 7038, p. 43-57 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors

    Leisner, Jørgen, Hansen, M. A., Larsen, M. H., Hansen, L., Ingmer, Hanne & Sørensen, Søren Johannes, 2012, In: International Journal of Food Microbiology. 152, 3, p. 107-115 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The genomes of two key bumblebee species with primitive eusocial organization

    Sadd, B. M., Barribeau, S. M., Bloch, G., de Graaf, D. C., Dearden, P., Elsik, C. G., Gadau, J., Grimmelikhuijzen, C., Hasselmann, M., Lozier, J. D., Robertson, H. M., Smagghe, G., Stolle, E., Van Vaerenbergh, M., Waterhouse, R. M., Bornberg-Bauer, E., Klasberg, S., Bennett, A. K., Câmara, F., Guigó, R. & 124 others, Hoff, K., Mariotti, M., Munoz-Torres, M., Murphy, T., Santesmasses, D., Amdam, G. V., Beckers, M., Beye, M., Biewer, M., Bitondi, M. M., Blaxter, M. L., Bourke, A. F., Brown, M. J., Buechel, S. D., Cameron, R., Cappelle, K., Carolan, J. C., Christiaens, O., Ciborowski, K. L., Clarke, D. F., Colgan, T. J., Collins, D. H., Cridge, A. G., Dalmay, T., Dreier, S., du Plessis, L., Duncan, E., Erler, S., Evans, J., Falcon, T., Flores, K., Freitas, F. C., Fuchikawa, T., Gempe, T., Hartfelder, K., Hauser, Frank, Helbing, S., Humann, F. C., Irvine, F., Jermiin, L. S., Johnson, C. E., Johnson, R. M., Jones, A. K., Kadowaki, T., Kidner, J. H., Koch, V., Köhler, A., Kraus, F. B., Lattorff, H. M. G., Leask, M., Lockett, G. A., Mallon, E. B., Antonio, D. S. M., Marxer, M., Meeus, I., Moritz, R. F., Nair, A., Näpflin, K., Nissen, I., Niu, J., Nunes, F. M., Oakeshott, J. G., Osborne, A., Otte, M., Pinheiro, D. G., Rossié, N., Rueppell, O., Santos, C. G., Schmid-Hempel, R., Schmitt, B. D., Schulte, C., Simões, Z. L., Soares, M. P., Swevers, L., Winnebeck, E. C., Wolschin, F., Yu, N., Zdobnov, E. M., Aqrawi, P. K., Blankenburg, K. P., Coyle, M., Francisco, L., Hernandez, A. G., Holder, M., Hudson, M. E., Jackson, L., Jayaseelan, J., Joshi, V., Kovar, C., Lee, S. L., Mata, R., Mathew, T., Newsham, I. F., Ngo, R., Okwuonu, G., Pham, C., Pu, L., Saada, N., Santibanez, J., Simmons, D., Thornton, R., Venkat, A., Walden, K. K., Wu, Y., Debyser, G., Devreese, B., Asher, C., Blommaert, J., Chipman, A. D., Chittka, L., Fouks, B., Liu, J., O'Neill, M. P., Sumner, S., Puiu, D., Qu, J., Salzberg, S. L., Scherer, S. E., Muzny, D. M., Richards, S., Robinson, G. E., Gibbs, R. A., Schmid-Hempel, P. & Worley, K. C., 2015, In: Genome Biology (Online Edition). 16, 31 p., 76.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    The genomic and phenotypic diversity of Schizosaccharomyces pombe

    Jeffares, D. C., Rallis, C., Rieux, A., Speed, D., Převorovský, M., Mourier, T., Marsellach, F. X., Iqbal, Z., Lau, W., Cheng, T. M. K., Pracana, R., Mülleder, M., Lawson, J. L. D., Chessel, A., Bala, S., Hellenthal, G., O'Fallon, B., Keane, T., Simpson, J. T., Bischof, L. & 22 others, Tomiczek, B., Bitton, D. A., Sideri, T., Codlin, S., Hellberg, J. E. E. U., van Trigt, L., Jeffery, L., Li, J., Atkinson, S., Thodberg, Malte, Febrer, M., McLay, K., Drou, N., Brown, W., Hayles, J., Salas, R. E. C., Ralser, M., Maniatis, N., Balding, D. J., Balloux, F., Durbin, R. & Bähler, J., 2015, In: Nature Genetics. 47, 3, p. 235-241 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The genomic basis of the plant island syndrome in Darwin’s giant daisies

    Cerca, J., Petersen, B., Lazaro-Guevara, J. M., Rivera-Colón, A., Birkeland, S., Vizueta, J., Li, S., Li, Q., Loureiro, J., Kosawang, C., Díaz, P. J., Rivas-Torres, G., Fernández-Mazuecos, M., Vargas, P., McCauley, R. A., Petersen, G., Santos-Bay, L., Wales, N., Catchen, J. M., Machado, D. & 9 others, Nowak, M. D., Suh, A., Sinha, N. R., Nielsen, Lene Rostgaard, Seberg, Ole, Gilbert, M Thomas P, Leebens-Mack, J. H., Rieseberg, L. H. & Martin, M. D., 2022, In: Nature Communications. 13, 13 p., 3729.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    The genomic impact of 100 million years of social evolution in seven ant species

    Gadau, J., Helmkampf, M., Nygaard, S., Roux, J., Simola, D. F., Smith, C. R., Suen, G., Wurm, Y. & Smith, C. D., 2012, In: Trends in Genetics. 28, 1, p. 14-21 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    The genomic landscape of reference genomes of cultivated human gut bacteria

    Lin, X., Hu, T., Chen, J., Liang, H., Zhou, J., Wu, Z., Ye, C., Jin, X., Xu, X., Zhang, W., Jing, X., Yang, T., Wang, J., Yang, H., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2023, In: Nature Communications. 14, 1, 11 p., 1663.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The genomic sequence of the chinese hamster ovary (CHO)-K1 cell line

    Xu, X., Nagarajan, H., Lewis, N. E., Pan, S., Cai, Z., Liu, X., Chen, W., Xie, M., Wang, W., Hammond, S., Andersen, M. R., Neff, N., Passarelli, B., Koh, W., Fan, H. C., Wang, J., Gui, Y., Lee, K. H., Betenbaugh, M., Quake, S. R. & 3 others, Famili, I., Palsson, B. O. & Wang, J., 2011, In: Nature Biotechnology. 29, 8, p. 735-741 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The genus Corymborkis Thou. (Orchidaceae) a taxonomic revision

    Rasmussen, Finn N., 1977, In: Botanisk Tidsskrift. 71, p. 161-192 32 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The genus Gymnospermium (Berberidaceae) in the Balkans

    Tan, K., Shuka, L., Siljak-Yakovlev, S., Malo, S. & Pustahija, F., 2011, In: Phytotaxa. 25, p. 1-17 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The genus Nemania s.l. (Xylariaceae) in Norway

    Granmo, A., Læssøe, Thomas & Schumacher, T., 1999, In: Sommerfeltia. 27, p. 1-96

    Research output: Contribution to journal › Journal article › Research › peer-review

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