Department of Biology

 

 
  1. 2023
  2. Published

    The genetic background of hydrocephalus in a population-based cohort: implication of ciliary involvement

    Munch, Tina Nørgaard, Hedley, P. L., Hagen, C. M., Baekvad-Hansen, M., Geller, F., Bybjerg-Grauholm, J., Nordentoft, Merete, Borglum, A. D., Werge, Thomas, Melbye, M., Hougaard, D. M., Larsen, Lars Allan, Christensen, Søren Tvorup & Christiansen, M., 2023, In: Brain Communications. 5, 1, 14 p., fcad004.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Impact of Microbial Symbionts on Fungus-Farming Termites and Their Derived Ecosystem Functions

    Murphy, Rob, Sinotte, Veronica Marie, Schmidt, Suzanne, Li, Guangshuo, Hamilton Renalias, J., Koné, N. A. & Poulsen, Michael, 2023, Assessing the Microbiological Health of Ecosystems. Hurst, C. J. (ed.). Wiley, p. 185-203

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  4. Published

    RibDif2: expanding amplicon analysis to full genomes

    Murphy, Rob & Strube, M. L., 2023, In: Bioinformatics Advances. 3, 1, 5 p., vbad111.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Modeling the radiative, thermal and chemical microenvironment of 3D scanned corals

    Murthy, Swathi, Picioreanu, C. & Kühl, Michael, 2023, In: Frontiers in Marine Science. 10, 17 p., 1160208.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Molecular Characterization and Morpho-Taxonomy of Gambierdiscus caribaeus Vandersea, Litaker, M.A.Faust, Kibler, W.C.Holland & P.A.Tester (Dinophyceae) from Mauritius Island, South-West Indian Ocean

    Mussai, P., Larsen, Jacob & Jeewon, R., 2023, In: Cryptogamie, Algologie. 44, 1, p. 1-11 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Ribosomal DNA Sequence-Based Taxonomy and Antimicrobial Activity of Prorocentrum spp. (Dinophyceae) from Mauritius Coastal Waters, South-West Indian Ocean

    Mussai, P., Larsen, Jacob, Alrefaei, A. F. & Jeewon, R., 2023, In: Marine Drugs. 21, 4, 16 p., 216.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Flood-tolerant rice for enhanced production and livelihood of smallholder farmers of Africa

    Mwakyusa, L., Dixit, S., Herzog, Max, Heredia, M. C., Madege, R. R. & Kilasi, N. L., 2023, In: Frontiers in Sustainable Food Systems. 7, 13 p., 1244460.

    Research output: Contribution to journalReviewResearchpeer-review

  9. Published

    Screening of potential donors for anaerobic stress tolerance during germination in rice

    Mwakyusa, L., Heredia, M. C., Kilasi, N. L., Madege, R. R., Herzog, Max & Dixit, S., 2023, In: Frontiers in Plant Science. 14, 13 p., 1261101.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    High-resolution crystal structure of the Mu8.1 conotoxin from Conus mucronatus

    Müller, E., Hackney, Celeste Menuet, Ellgaard, Lars & Morth, J. P., 2023, In: Acta crystallographica. Section F, Structural biology communications. 79, 9, p. 240-246 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    NHA1 is a cation/proton antiporter essential for the water-conserving functions of the rectal complex in Tribolium castaneum.

    Naseem, Muhammad Tayyib, Beaven, R., Koyama, Takashi, Naz, S., Su, S., Leader, D. P., Klærke, Dan Arne, Callø, Kirstine, Denholm, B. & Halberg, Kenneth Veland, 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 13, 11 p., e2217084120.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Plastic debris in lakes and reservoirs

    Nava, V., Chandra, S., Aherne, J., Alfonso, M. B., Antão-Geraldes, A. M., Attermeyer, K., Bao, R., Bartrons, M., Berger, S. A., Biernaczyk, M., Bissen, R., Brookes, J. D., Brown, D., Cañedo-Argüelles, M., Canle, M., Capelli, C., Carballeira, R., Cereijo, J. L., Chawchai, S., Christensen, S. T. & 59 others, Christoffersen, Kirsten Seestern, de Eyto, E., Delgado, J., Dornan, T. N., Doubek, J. P., Dusaucy, J., Erina, O., Ersoy, Z., Feuchtmayr, H., Frezzotti, M. L., Galafassi, S., Gateuille, D., Gonçalves, V., Grossart, H. P., Hamilton, D. P., Harris, T. D., Kangur, K., Kankılıç, G. B., Kessler, R., Kiel, C., Krynak, E. M., Leiva-Presa, À., Lepori, F., Matias, M. G., Matsuzaki, S. I. S., McElarney, Y., Messyasz, B., Mitchell, M., Mlambo, M. C., Motitsoe, S. N., Nandini, S., Orlandi, V., Owens, C., Özkundakci, D., Pinnow, S., Pociecha, A., Raposeiro, P. M., Rõõm, E. I., Rotta, F., Salmaso, N., Sarma, S. S. S., Sartirana, D., Scordo, F., Sibomana, C., Siewert, D., Stepanowska, K., Tavşanoğlu, Ü. N., Tereshina, M., Thompson, J., Tolotti, M., Valois, A., Verburg, P., Welsh, B., Wesolek, B., Weyhenmeyer, G. A., Wu, N., Zawisza, E., Zink, L. & Leoni, B., 2023, In: Nature. 619, p. 317-322 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Gambierdiscus (gonyaulacales, dinophyceae) diversity in Vietnamese waters with description of G. vietnamensis sp. nov.

    Nguyen-Ngoc, L., Larsen, Jacob, Doan-Nhu, H., Nguyen, X. V., Chomérat, N., Lundholm, Nina, Phan-Tan, L., Dao, H. V., Nguyen, N. L., Nguyen, H. H. & Van Chu, T., 2023, In: Journal of Phycology. 59, 3, p. 496-517

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Reasons for the dramatic loss of Lobelia dortmanna, a keystone plant species of softwater lakes in the Northern Hemisphere

    Nielsen, S. R., Martinsen, K. T., Pedersen, Ole & Båstrup-Spohr, Lars, 2023, In: Freshwater Biology. 68, 10, p. 1673-1684 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Global online trade in primates for pets

    Nijman, V., Morcatty, T. Q., El Bizri, H. R., Al-Razi, H., Ang, A., Ardiansyah, A., Atoussi, S., Bergin, D., Bell, S., Braga-Pereira, F., Campera, M., Das, N., Silva, F. E., Feddema, K., Foreman, G., Fourage, A., Gnanaolivu, S. D., Hansen, M. F., Račevska, E., Rapone, B. C. & 13 others, Regmi, G. R., Shepherd, C. R., Shukhova, S., Siriwat, P., Smith, J. H., Mir Mohamad Tabar, S. A., Tavares, A. S., Weldon, A. V., Wilson, A., Yamaguchi, N., Zhang, M., Svensson, M. S. & Anne-Isola Nekaris, K., 2023, In: Environmental Development. 48, 15 p., 100925.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Application of whole genome sequencing data in population genetics: identifying sex-linked scaffolds and inferring admixture in a unique cattle population

    Nursyifa, Casia, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 225 p.

    Research output: Book/ReportPh.D. thesisResearch

  17. Published

    Exploring antidepressant treatment response using biological and clinical measurements

    Nøhr, A. K., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 125 p.

    Research output: Book/ReportPh.D. thesisResearch

  18. Published

    The barrier to radial oxygen loss protects roots against hydrogen sulphide intrusion and its toxic effect

    Peralta Ogorek, Lucas León, Takahashi, H., Nakazono, M. & Pedersen, Ole, 2023, In: New Phytologist. 238, 5, p. 1825-1837 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Long-read MinION™ sequencing of 16S and 16S-ITS-23S rRNA genes provides species-level resolution of Lactobacillaceae in mixed communities

    Olivier, S. A., Bull, M. K., Strube, M. L., Murphy, Rob, Ross, T., Bowman, J. P. & Chapman, B., 2023, In: Frontiers in Microbiology. 14, 15 p., 1290756.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Salt-affected soils in Tanzanian agricultural lands: Type of soils and extent of the problem

    Omar, M. M., Shitindi, M. J., Massawe, B. H. J., Fue, K. G., Meliyo, J. L. & Pedersen, Ole, 2023, In: Sustainable Environment. 9, 1, 19 p., 2205731.

    Research output: Contribution to journalReviewResearchpeer-review

  21. Published

    Seabird’s cry: repertoire and vocal expression of contextual valence in the little auk (Alle alle)

    Osiecka, A. N., Briefer, Elodie, Kidawa, D. & Wojczulanis-Jakubas, K., 2023, In: Scientific Reports. 13, 1, 10 p., 8623.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Social calls of the little auk (Alle alle) reflect body size and possibly partnership, but not sex

    Osiecka, A. N., Briefer, Elodie, Kidawa, D. & Wojczulanis-jakubas, K., 2023, In: Royal Society Open Science. 10, 9, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop

    Oxenfarth, A., Kümmerer, Felix, Bottaro, S., Schnieders, R., Pinter, G., Jonker, H. R. A., Fürtig, B., Richter, C., Blackledge, M., Lindorff-Larsen, Kresten & Schwalbe, H., 2023, In: Journal of the American Chemical Society. 145, 30, p. 16557-16572 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Use and detection of a vitamin B1 degradation product yields new views of the marine B1 cycle and plankton metabolite exchange

    Paerl, R. W., Curtis, N. P., Bittner, Meriel Jennifer, Cohn, M. R., Gifford, S. M., Bannon, C. C., Rowland, E. & Bertrand, E. M., 2023, In: mBio. 14, 4, 21 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network

    Pan, X., Ma, Z., Sun, X., Li, H., Zhang, T., Zhao, C., Wang, N., Heller, Rasmus, Hung Wong, W., Wang, W., Jiang, Y. & Wang, Y., 2023, In: Genomics, Proteomics and Bioinformatics. 21, 3, p. 632-648 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Epithelium dynamics differ in time and space when exposed to the permeation enhancers penetramax and EGTA. A head-to-head mechanistic comparison

    Panou, D. A., Pedersen, Stine Helene Falsig, Kristensen, Mie & Nielsen, Hanne Mørck, 2023, In: Frontiers in Drug Delivery. 3, 16 p., 1221628.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Xyloplax princealberti (Asteroidea, Echinodermata): A New Species That Is Not Always Associated with Wood Falls

    Payne, C. Y., Tilic, E., Boschen-Rose, R. E., Gannon, A., Stiller, Josefin, Hiley, A. S., Grupe, B. M., Mah, C. L. & Rouse, G. W., 2023, In: Diversity. 15, 12, 21 p., 1212.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Cilia and flagella

    Pedersen, Lotte Bang, Jurisch-Yaksi, N., Schmid, F. M. & Christensen, Søren Tvorup, 2023, Encyclopedia of Cell Biology, Second Edition. Bradshaw, R. A., Hart, G. W. & Stahl, P. D. (eds.). 2 ed. Oxford: Elsevier, Vol. 3. p. 164-188 25 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  29. Published

    Genome sequence and genomic analysis of liver abscess caused by hypervirulent Klebsiella pneumoniae

    Pei, N., Liu, X., Jian, Z., Yan, Q., Liu, Q., Kristiansen, Karsten, Li, J. & Liu, W., 2023, In: 3 Biotech. 13, 3, 7 p., 76.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Outer apoplastic barriers in roots: prospects for abiotic stress tolerance

    Peralta Ogorek, Lucas León, Jimenez Serna, Juan de la Cruz, Visser, E. J. W., Takahashi, H., Nakazono, M., Shabala, S. & Pedersen, Ole, 2023, In: Functional Plant Biology. 51, 11 p., FP23133.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Assessment of models for calculating the hydrodynamic radius of intrinsically disordered proteins

    Pesce, Francesco, Newcombe, Estella Anne, Seiffert, P., Tranchant, E. E., Olsen, Johan Gotthardt, Grace, C. R., Kragelund, Birthe Brandt & Lindorff-Larsen, Kresten, 2023, In: Biophysical Journal. 122, 2, p. 310-321 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Combining Experiments and Simulations to Examine the Temperature-Dependent Behavior of a Disordered Protein

    Pesce, Francesco & Lindorff-Larsen, Kresten, 2023, In: Journal of Physical Chemistry B. 127, 28, p. 6277-6286 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Understanding intrinsically disordered proteins: from integrative modelling to design

    Pesce, Francesco, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/ReportPh.D. thesisResearch

  34. Published

    Temporal phosphoproteomics reveals WEE1-dependent control of 53BP1 pathway

    Petrosius, V., Benada, Jan, Nielsen, Olaf, Schoof, E. M. & Sørensen, Claus Storgaard, 2023, In: iScience. 26, 1, 24 p., 105806.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published
  36. Published

    Past, Present and Future of the Aral Sea - A Review of its Fauna and Flora before and during the Regression Crisis

    Plotnikov, I. S., Aladin, N. V., Zhakova, L. V., Mossin, J. & Høeg, Jens Thorvald, 2023, In: Zoological Studies. 62, 38 p., 19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    A research agenda for nonvascular photoautotrophs under climate change

    Porada, P., Bader, M. Y., Berdugo, M. B., Colesie, C., Ellis, C. J., Giordani, P., Herzschuh, U., Ma, Y., Launiainen, S., Nascimbene, J., Petersen, I., Raggio Quílez, J., Rodríguez-Caballero, E., Rousk, K., Sancho, L. G., Scheidegger, C., Seitz, S., Van Stan, J. T., Veste, M., Weber, B. & 1 others, Weston, D. J., 2023, In: New Phytologist. 237, 5, 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Functions of m6A-YTH modules in plants: Lessons from high-throughput sequencing analyses

    Porcelli, C., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 178 p.

    Research output: Book/ReportPh.D. thesisResearch

  39. Published

    tRNAs Are Stable After All: Pitfalls in Quantification of tRNA from Starved Escherichia coli Cultures Exposed by Validation of RNA Purification Methods

    Prossliner, T., Agrawal, S., Heidemann, Ditte Fogh, Sorensen, M. A. A. & Svenningsen, Sine Lo, 2023, In: mBio. 14, 1, 18 p., e02805-22.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Systematic Analysis of Long Non-Coding RNAs in Inflammasome Activation in Monocytes/Macrophages

    Qian, N., Distefano, R., Ilieva, M., Madsen, J. H., Rennie, Sarah & Uchida, S., 2023, In: Non-coding RNA. 9, 5, 16 p., 50.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    A population of stem cells with strong regenerative potential discovered in deer antlers

    Qin, T., Zhang, G., Zheng, Y., Li, S., Yuan, Y., Li, Q., Hu, M., Si, H., Wei, G., Gao, X., Cui, X., Xia, B., Ren, J., Wang, K., Ba, H., Liu, Z., Heller, R., Li, Z., Wang, W., Huang, J. & 2 others, Li, C. & Qiu, Q., 2023, In: Science (New York, N.Y.). 379, 6634, p. 840-847 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published
  43. Published

    Molecular Epidemiology of HCV RNA Genotype-3 in Dhaka City, Bangladesh

    Rahman, M. A., Islam, M. M., Ali, M. E., Islam, M. A., Afroze, F., Hossain, Mohammad Shamim & Rus'd, A. A., 2023, In: Global Medical Genetics. 10, 3, p. 199-204 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Co-diversification of an intestinal Mycoplasma and its salmonid host

    Rasmussen, Jacob Agerbo, Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Probabilistic modelling in genomics

    Rasmussen, Malthe Sebro, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 158 p.

    Research output: Book/ReportPh.D. thesisResearch

  46. Published

    Hepatic PGC-1α has minor regulatory effect on the liver transcriptome and metabolome during high fat high fructose diet and exercise training

    Rasmussen, M. K., Thøgersen, R., Horsbøl Lindholm, P., Bertram, H. C. & Pilegaard, Henriette, 2023, In: Gene. 851, 14 p., 147039.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Xenobiotic Exposure and Migraine-Associated Signaling: A Multimethod Experimental Study Exploring Cellular Assays in Combination with Ex Vivo and In Vivo Mouse Models

    Rasmussen, Rikke Holm, Christensen, S. L., Callø, Kirstine, Nielsen, B. S., Rehfeld, A., Taylor-Clark, T. E., Haanes, Kristian Agmund, Taboureau, O., Audouze, K., Klærke, Dan Arne, Olesen, Jes & Kristensen, D. M., 2023, In: Environmental Health Perspectives. 131, 11, 14 p., 117003.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Microbial Dynamics in Newly Diagnosed and Treatment Naive IBD Patients in the Mediterranean

    Rausch, P., Ellul, S., Pisani, A., Bang, C., Tabone, T., Cordina, C. M., Zahra, G., Franke, A. & Ellul, P., 2023, In: Inflammatory Bowel Diseases. 29, 7, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Rodent behavior following a dural inflammation model with anti-CGRP migraine medication treatment

    Reducha, Philip Victor, Bömers, J. P., Edvinsson, L. & Haanes, Kristian Agmund, 2023, In: Frontiers in Neurology. 14, 13 p., 1082176.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Bi-directional interactions between anti-diabetics and human gut microbiota

    Ren, H., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.

    Research output: Book/ReportPh.D. thesisResearch

  51. Published

    National records of 3000 European bee and hoverfly species: A contribution to pollinator conservation

    Reverté, S., Miličić, M., Ačanski, J., Andrić, A., Aracil, A., Aubert, M., Balzan, M. V., Bartomeus, I., Bogusch, P., Bosch, J., Budrys, E., Cantú-Salazar, L., Castro, S., Cornalba, M., Demeter, I., Devalez, J., Dorchin, A., Dufrêne, E., Đorđević, A., Fisler, L. & 87 others, Fitzpatrick, Ú., Flaminio, S., Földesi, R., Gaspar, H., Genoud, D., Geslin, B., Ghisbain, G., Gilbert, F., Gogala, A., Grković, A., Heimburg, H., Herrera-Mesías, F., Jacobs, M., Janković Milosavljević, M., Janssen, K., Jensen, J. K., Ješovnik, A., Józan, Z., Karlis, G., Kasparek, M., Kovács-Hostyánszki, A., Kuhlmann, M., Le Divelec, R., Leclercq, N., Likov, L., Litman, J., Ljubomirov, T., Madsen, Henning Bang, Marshall, L., Mazánek, L., Milić, D., Mignot, M., Mudri-Stojnić, S., Müller, A., Nedeljković, Z., Nikolić, P., Ødegaard, F., Patiny, S., Paukkunen, J., Pennards, G., Pérez-Bañón, C., Perrard, A., Petanidou, T., Pettersson, L. B., Popov, G., Popov, S., Praz, C., Prokhorov, A., Quaranta, M., Radchenko, V. G., Radenković, S., Rasmont, P., Rasmussen, C., Reemer, M., Ricarte, A., Risch, S., Roberts, S. P. M., Rojo, S., Ropars, L., Rosa, P., Ruiz, C., Sentil, A., Shparyk, V., Smit, J., Sommaggio, D., Soon, V., Ssymank, A., Ståhls, G., Stavrinides, M., Straka, J., Tarlap, P., Terzo, M., Tomozii, B., Tot, T., van der Ent, L. J., van Steenis, J., van Steenis, W., Varnava, A. I., Vereecken, N. J., Veselić, S., Vesnić, A., Weigand, A., Wisniowski, B., Wood, T. J., Zimmermann, D., Michez, D. & Vujić, A., 2023, In: Insect Conservation and Diversity. 16, 6, p. 758-775 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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