Department of Biology

 

 
  1. 2022
  2. Published

    Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays

    Chen, A., Liao, S., Cheng, M., Ma, K., Wu, L., Lai, Y., Qiu, X., Yang, J., Xu, J., Hao, S., Wang, X., Lu, H., Chen, X., Liu, X., Huang, X., Li, Z., Hong, Y., Jiang, Y., Peng, J., Liu, S. & 49 others, Shen, M., Liu, C., Li, Q., Yuan, Y., Wei, X., Zheng, H., Feng, W., Wang, Z., Liu, Y., Wang, Z., Yang, Y., Xiang, H., Han, L., Qin, B., Guo, P., Lai, G., Muñoz-Cánoves, P., Maxwell, P. H., Thiery, J. P., Wu, Q., Zhao, F., Chen, B., Li, M., Dai, X., Wang, S., Kuang, H., Hui, J., Wang, L., Fei, J., Wang, O., Wei, X., Lu, H., Wang, B., Liu, S., Gu, Y., Ni, M., Zhang, W., Mu, F., Yin, Y., Yang, H., Lisby, Michael, Cornall, R. J., Mulder, J., Uhlén, M., Esteban, M. A., Li, Y., Liu, L., Xu, X. & Wang, J., 2022, In: Cell. 185, 10, p. 1777-1792.e21

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    The Pyramiding of Three Key Root Traits Aid Breeding of Flood-Tolerant Rice

    Chen, L., Zhu, T., Peralta Ogorek, Lucas León, Wang, Y., Sauter, M. & Pedersen, Ole, 2022, In: Plants. 11, 15, 10 p., 2033.

    Research output: Contribution to journalReviewResearchpeer-review

  4. Published

    Influences of Shifted Vegetation Phenology on Runoff Across a Hydroclimatic Gradient

    Chen, S., Fu, Y. H., Geng, X., Hao, Z., Tang, Jing, Zhang, X., Xu, Z. & Hao, F., 2022, In: Frontiers in Plant Science. 12, 13 p., 802664.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Vegetation phenology and its ecohydrological implications from individual to global scales

    Chen, S., Fu, Y. H., Hao, F., Li, X., Zhou, S., Liu, C. & Tang, Jing, 2022, In: Geography and Sustainability. 3, 4, p. 334-338 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published
  7. Published

    The developing airway and gut microbiota in early life is influenced by age of older siblings

    Christensen, E. D., Hjelmsø, M. H., Thorsen, Jonathan Jan Ilve, Shah, S., Redgwell, T., Poulsen, Christina Egeø, Trivedi, Urvish, Russel, J., Gupta, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Rasmussen, Morten Arendt, Bisgaard, H. & Stokholm, Jakob, 2022, In: Microbiome. 10, 15 p., 106.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Bidirectional protein–protein interactions control liquid–liquid phase separation of PSD-95 and its interaction partners

    Christensen, N. R., Pedersen, Christian Parsbæk, Sereikaité, Vita, Pedersen, J. N., Vistrup-Parry, M., Sørensen, Andreas Toft, Otzen, D., Teilum, Kaare, Madsen, Kenneth Lindegaard & Strømgaard, Kristian, 2022, In: iScience. 25, 2, 26 p., 103808.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Smooth muscle ATP-sensitive potassium channels mediate migraine-relevant hypersensitivity in mouse models

    Christensen, S. L., Rasmussen, Rikke Holm, Cour, S. L., Ernstsen, C., Hansen, Thomas Folkmann, Kogelman, L. J. A., Lauritzen, S. P., Guzaite, G., Styrishave, Bjarne, Janfelt, Christian, Christensen, Søren Tvorup, Aziz, Q., Tinker, A., Jansen-Olesen, I., Olesen, Jes & Kristensen, D. M., 2022, In: Cephalalgia. 42, 2, p. 93-107

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Dual action of the cannabinoid receptor 1 ligand arachidonyl-2′-chloroethylamide on calcitonin gene-related peptide release

    Christiansen, I. M., Edvinsson, J. C. A., Reducha, Philip Victor, Edvinsson, L. & Haanes, Kristian Agmund, 2022, In: Journal of Headache and Pain. 23, 11 p., 30.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published
  12. Published

    A two-step metagenomics approach for the identification and mitochondrial DNA contig assembly of vertebrate prey from the blood meals of common vampire bats (Desmodus rotundus)

    Chua, Physilia, Carøe, C., Crampton-Platt, A., Reyes-Avila, C. S., Jones, G., Streicker, D. G. & Bohmann, Kristine, 2022, In: Metabarcoding and Metagenomics. 6, p. 75-87 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Taking metagenomics under the wings

    Chua, Physilia & Rasmussen, Jacob Agerbo, 2022, In: Nature Reviews Microbiology. 20, 8, p. 447 1 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  14. Published

    Multiomics signatures of type 1 diabetes with and without albuminuria

    Clos-Garcia, M., Ahluwalia, Tarun Veer Singh, Winther, S. A., Henriksen, P., Ali, M., Fan, Yong, Stankevic, Evelina, Lyu, Liwei, Vogt, J. K., Hansen, Torben, Legido-Quigley, C., Rossing, Peter & Pedersen, Oluf Borbye, 2022, In: Frontiers in Endocrinology. 13, 17 p., 1015557.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Genomic insights into the secondary aquatic transition of penguins

    Cole, T. L., Zhou, C., Fang, M., Pan, H., Ksepka, D. T., Fiddaman, S. R., Emerling, C. A., Thomas, D. B., Bi, X., Fang, Q., Ellegaard, M. R., Feng, S., Smith, A. L., Heath, T. A., Tennyson, A. J. D., Borboroglu, P. G., Wood, J. R., Hadden, P. W., Grosser, S., Bost, C. A. & 20 others, Cherel, Y., Mattern, T., Hart, T., Sinding, Mikkel Holger Strander, Shepherd, L. D., Phillips, R. A., Quillfeldt, P., Masello, J. F., Bouzat, J. L., Ryan, P. G., Thompson, D. R., Ellenberg, U., Dann, P., Miller, G., Dee Boersma, P., Zhao, R., Gilbert, M Thomas P, Yang, H., Zhang, D. & KU, thw266, 2022, In: Nature Communications. 13, 13 p., 3912.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    A fungal symbiont converts provisioned cellulose into edible yield for its leafcutter ant farmers

    Conlon, B. H., O'Tuama, D., Michelsen, Anders, Crumière, A. J. J. & Shik, Jonathan Z., 2022, In: Biology Letters. 18, 4, 6 p., 20220022.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Orthogonal protocols for DNA extraction from filamentous fungi

    Conlon, B. H., Schmidt, Suzanne, Poulsen, Michael & Shik, Jonathan Z., 2022, In: STAR Protocols. 3, 1, 10 p., 101126.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM context

    Corsi, G. I., Qu, Kunli, Alkan, F., Pan, Xiaoguang, Luo, Y. & Gorodkin, Jan, 2022, In: Nature Communications. 13, 14 p., 3006.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Nutritional challenges of feeding a mutualist: Testing for a nutrient–toxin tradeoff in fungus-farming leafcutter ants

    Crumière, A. J. J., Mallett, S., Michelsen, Anders, Rinnan, Riikka & Shik, Jonathan Z., 2022, In: Ecology. 103, 6, 12 p., e3684.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    The First Genome of the Balearic Shearwater (Puffinus mauretanicus) Provides a Valuable Resource for Conservation Genomics and Sheds Light on Adaptation to a Pelagic lifestyle

    Cuevas-Caballé, C., Ferrer Obiol, J., Vizueta Moraga, Joel, Genovart, M., Gonzalez-Solís, J., Riutort, M. & Rozas, J., 2022, In: Genome Biology and Evolution. 14, 5, 14 p., evac067.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Arctic freshwater biodiversity: Establishing baselines, trends, and drivers of ecological change

    Culp, J. M., Goedkoop, W., Christensen, T., Christoffersen, Kirsten Seestern, Fefilova, E., Liljaniemi, P., Novichkova, A. A., Ólafsson, J. S., Sandøy, S., Zimmerman, C. E. & Lento, J., 2022, In: Freshwater Biology. 67, 1, p. 1-13 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Proteasome inhibition alters mitotic progression through the upregulation of centromeric α-Satellite RNAs

    Cáceres-Gutiérrez, R. E., Andonegui, M. A., Oliva-Rico, D. A., González-Barrios, R., Luna, F., Arriaga-Canon, C., López-Saavedra, A., Prada, D., Castro, C., Parmentier, L., Díaz-Chávez, J., Alfaro-Mora, Y., Navarro-Delgado, E. I., Fabian-Morales, E., Tran, B., Shetty, J., Zhao, Y., Alcaraz, N., De la Rosa, C., Reyes, J. L. & 4 others, Hédouin, S., Hubé, F., Francastel, C. & Herrera, L. A., 2022, In: FEBS Journal. 289, 7, p. 1858-1875 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Convergent genomic signals of tail length reduction in multiple macaque lineages

    DENG, Y., 2022, Section for Ecology and Evolution, Department of Biology, University of Copenhagen. 164 p.

    Research output: Book/ReportPh.D. thesisResearch

  24. Published

    Cell size matters: Nano- and micro-plastics preferentially drive declines of large marine phytoplankton due to co-aggregation

    Dedman, C. J., Christie-Oleza, J. A., Fernandez Juarez, Victor & Echeveste, P., 2022, In: Journal of Hazardous Materials. 424, Part B, 13 p., 127488.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Development and Optimization of a Silica Column-Based Extraction Protocol for Ancient DNA

    Dehasque, M., Chrzanová Pecnerová, Patrícia, Kempe Lagerholm, V., Ersmark, E., Danilov, G. K., Mortensen, P., Vartanyan, S. & Dalén, L., 2022, In: Genes. 13, 4, 16 p., 687.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Nutrition of Corals and Their Trophic Plasticity under Future Environmental Conditions

    Dellisanti, Walter, Seveso, D. & Fang, J. K., 2022, Corals - Habitat Formers From the Shallow to the Deep. InTechOpen

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  27. Published

    Ancient proteins resolve controversy over the identity of Genyornis eggshell

    Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Biophysical properties at patch scale shape the metabolism of biofilm landscapes

    Depetris, A., Tagliavini, G., Peter, H., Kühl, Michael, Holzner, M. & Battin, T. J., 2022, In: npj Biofilms and Microbiomes. 8, 12 p., 5.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Validation of Potential Reference Genes for Real-Time qPCR Analysis in Pharaoh Ant, Monomorium pharaonis (Hymenoptera: Formicidae)

    Ding, G., Gao, Q., Chen, J., Zhao, J., KU, thw266 & Liu, W., 2022, In: Frontiers in Physiology. 13, 9 p., 852357.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    The Gut Microbiota of Healthy and Flavobacterium psychrophilum-Infected Rainbow Trout Fry Is Shaped by Antibiotics and Phage Therapies

    Donati, V. L., Madsen, L., Middelboe, Mathias, Strube, M. L. & Dalsgaard, I., 2022, In: Frontiers in Microbiology. 13, 21 p., 771296.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    A Bacterial Genome and Culture Collection of Gut Microbial in Weanling Piglet

    Dong, B., Lin, X., Jing, X., Hu, T., Zhou, J., Chen, J., Xiao, L., Wang, B., Chen, Z., Liu, J., Hu, Y., Liu, G., Liu, S., Liu, J., Wei, W. & Zou, Y., 2022, In: Microbiology Spectrum. 10, 1, 13 p., e02417-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Male ant reproductive investment in a seasonal wet tropical forest: Consequences of future climate change

    Donoso, D. A., Basset, Y., Shik, Jonathan Z., Forrister, D. L., Uquillas, A., Salazar-Méndez, Y., Arizala, S., Polanco, P., Beckett, S., Diego Dominguez, G. & Barrios, H., 2022, In: PLoS ONE. 17, 3 , 13 p., e0266222.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Greenland Ice Sheet Surfaces Colonized by Microbial Communities Emit Volatile Organic Compounds

    Doting, E. L., Davie-Martin, Cleo Lisa, Johansen, A., Benning, L. G., Tranter, M., Rinnan, Riikka & Anesio, A. M., 2022, In: Frontiers in Microbiology. 13, 14 p., 886293.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    A context-dependent and disordered ubiquitin-binding motif

    Dreier, Jesper Elmsted, Prestel, Andreas, Martins, J. M., Brøndum, S. S., Nielsen, Olaf, Garbers, Anna Engstrøm, Suga, H., Boomsma, Wouter, Rogers, Joseph Matthew, Hartmann-Petersen, Rasmus & Kragelund, Birthe Brandt, 2022, In: Cellular and molecular life sciences : CMLS. 79, 9, 21 p., 484.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Independent and adaptive evolution of phenotypic novelties driven by coral symbiosis in barnacle larvae

    Dreyer, N., Tsai, P. C., Olesen, Jørgen, Kolbasov, G. A., Høeg, Jens Thorvald & Chan, B. K. K., 2022, In: Evolution. 76, 1, p. 139-157 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published
  37. Published

    Life-threatening viral disease in a novel form of autosomal recessive IFNAR2 deficiency in the Arctic

    Duncan, C. J. A., Skouboe, M. K., Howarth, S., Hollensen, A. K., Chen, R., Børresen, M. L., Thompson, B. J., Spegarova, J. S., Hatton, C. F., Stæger, F. F., Andersen, M. K., Whittaker, J., Paludan, S. R., Jørgensen, S. E., Thomsen, M. K., Mikkelsen, J. G., Heilmann, C., Buhas, D., Øbro, N. F., Bay, J. T. & 17 others, Marquart, Hanne Vibeke Hansen, Morena, M. T. D. L., Klejka, J. A., Hirschfeld, M., Borgwardt, L., Forss, I., Masmas, T., Poulsen, A., Noya, F., Rouleau, G., Hansen, Torben, Zhou, S., Albrechtsen, Anders, Alizadehfar, R., Allenspach, E. J., Hambleton, S. & Mogensen, T. H., 2022, In: Journal of Experimental Medicine. 219, 6, 26 p., e20212427.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater

    Dunon, V., Holmsgaard, P. N., Dealtry, S., Lavigne, R., Sørensen, Søren Johannes, Smalla, K., Top, E. M. & Springael, D., 2022, In: Applied and Environmental Microbiology. 88, 3, 17 p., e01648-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    WANNABEES - forklædt som bi

    Dupont, Y. L. & Madsen, Henning Bang, 2022, In: Haven. 8, p. 76-79

    Research output: Contribution to journalJournal articleCommunication

  40. Published

    Lasmiditan and 5-Hydroxytryptamine in the rat trigeminal system: expression, release and interactions with 5-HT1 receptors

    Edvinsson, J. C. A., Maddahi, A., Christiansen, I. M., Reducha, Philip Victor, Warfvinge, K., Sheykhzade, Majid, Edvinsson, L. & Haanes, Kristian Agmund, 2022, In: The Journal of Headache and Pain. 23, 19 p., 26.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

    Einarsson, H., Salvatore, Marco, Vaagenso, C., Alcaraz, N., Lange, Jette Bornholdt, Rennie, Sarah & Andersson, Robin, 2022, In: eLife. 2022, 36 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Fagligt grundlag for naturløfter for Friland oksekød

    Ejrnæs, R. & Bruun, Hans Henrik, 2022, Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi. 17 p. (Fagligt notat fra DCE – Nationalt Center for Miljø og Energi, Vol. 21).

    Research output: Book/ReportReportCommissioned

  43. Published

    Genome-wide study of early and severe childhood asthma identifies interaction between CDHR3 and GSDMB

    Eliasen, A. U., Pedersen, C. E. T., Rasmussen, M. A., Wang, N., Soverini, M., Fritz, A., Stokholm, J., Chawes, B. L., Morin, A., Bork-Jensen, J., Grarup, N., Pedersen, O., Hansen, T., Linneberg, A., Mortensen, P. B., Hougaard, D. M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Mors, O., Nordentoft, M. & 14 others, Børglum, A. D., Werge, Thomas, Agerbo, E., Söderhall, C., Altman, M. C., Thysen, A. H., McKennan, C. G., Brix, Susanne, Gern, J. E., Ober, C., Ahluwalia, Tarun Veer Singh, Bisgaard, H., Pedersen, A. G. & Bønnelykke, Klaus, 2022, In: Journal of Allergy and Clinical Immunology. 150, 3, p. 622-630

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    How Reciprocal Interactions Between the Tumor Microenvironment and Ion Transport Proteins Drive Cancer Progression

    Elingaard-Larsen, L. O., Rolver, M. G., Sørensen, E. E. & Pedersen, Stine Helene Falsig, 2022, From Malignant Transformation to Metastasis: Ion Transport in Tumor Biology. Stock, C. & Pardo, L. A. (eds.). Springer, p. 1-38 38 p. (Reviews of Physiology, Biochemistry and Pharmacology, Vol. 182).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  45. Published

    Immersive virtual reality in STEM: is IVR an effective learning medium and does adding self-explanation after a lesson improve learning outcomes?

    Elme, L., Jørgensen, M. L. M., Dandanell, Gert, Mottelson, A. & Makransky, Guido, 2022, In: Educational Technology Research and Development. 70, 5, p. 1601-1626 26 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Effects of pollution-induced changes in oxygen conditions scaling up from individuals to ecosystems in a tropical river network

    Eriksen, T. E., Jacobsen, Dean, Demars, B. O. L., Brittain, J. E., Søli, G. & Friberg, N., 2022, In: Science of the Total Environment. 814, 11 p., 151958.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    A glutamine-based single α-helix scaffold to target globular proteins

    Escobedo, A., Piccirillo, J., Aranda, J., Diercks, T., Mateos, B., Garcia-Cabau, C., Sanchez-Navarro, M., Topal, B., Biesaga, M., Staby, L., Kragelund, Birthe Brandt, Garcia, J., Millet, O., Orozco, M., Coles, M., Crehuet, R. & Salvatella, X., 2022, In: Nature Communications. 13, 18 p., 7073.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    The chromosome-scale assembly of the Canary Islands endemic spider Dysdera silvatica (Arachnida, Araneae) sheds light on the origin and genome structure of chemoreceptor gene families in chelicerates

    Escuer, P., Pisarenco, V. A., Fernandez-Ruiz, A. A., Vizueta, J., Sanchez-Herrero, J. F., Arnedo, M. A., Sanchez-Gracia, A. & Rozas, J., 2022, In: Molecular Ecology Resources. 22, 1, p. 375-390 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Escherichia coli protein synthesis is limited by mRNA availability rather than ribosomal capacity during phosphate starvation

    Espinosa, R., Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2022, In: Frontiers in Microbiology. 13, 13 p., 989818.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Euchromatin factors HULC and Set1C affect heterochromatin organization and mating-type switching in fission yeast Schizosaccharomyces pombe

    Esquivel-Chávez, A., Maki, T., Tsubouchi, H., Handa, T., Kimura, H., Haber, J. E., Thon, Genevieve & Iwasaki, H., 2022, In: Genes and Genetic Systems. 97, 3, p. 123-138 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Distinct Functional Metagenomic Markers Predict the Responsiveness to Anti-PD-1 Therapy in Chinese Non-Small Cell Lung Cancer Patients

    Fang, C., Fang, W., Xu, L., Gao, F., Hou, Y., Zou, H., Ma, Y., Moll, J. M., Yang, Y., Wang, D., Huang, Y., Ren, H., Zhao, H., Qin, S., Zhong, H., Li, J., Liu, S., Yang, H., Wang, J., Brix, S. & 2 others, Kristiansen, Karsten & Zhang, L., 2022, In: Frontiers in Oncology. 12, 13 p., 837525.

    Research output: Contribution to journalJournal articleResearchpeer-review