Department of Biology

 

 
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  1. 2023
  2. Published

    Microbe-mineral interactions in the Plastisphere: Coastal biogeochemistry and consequences for degradation of plastics

    Dodhia, Maya, Rogers, K. L., Fernandez Juarez, Victor, Carreres-Calabuig, J. A., Löscher, C. R., Tisserand, A. A., Keulen, N., Riemann, Lasse, Shashoua, Y. & Posth, Nicole Rita Elisabeth, 2023, In: Frontiers in Marine Science. 10, 17 p., 1134815.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Extracting DNA from soil or directly from isolated nematodes indicate dissimilar community structure for Europe-wide forest soils

    Donhauser, J., Briones, M. J. I., Mikola, J., Jones, D. L., Eder, R., Filser, J., Frossard, A., Krogh, P. H., Sousa, J. P., Cortet, J., Desie, E., Domene, X., Djuric, S., Hackenberger, D., Jimenez, J. J., Iamandei, M., Rissmann, C., Schmidt, O., Shanskiy, M., Silfver, T. & 4 others, Vancampenhout, K., Vasutova, M., Velizarova, E. & Frey, B., 2023, In: Soil Biology and Biochemistry. 185, 16 p., 109154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Compromised junctional integrity phenocopies age-dependent renal dysfunction in Drosophila Snakeskin mutants

    Dornan, A. J., Halberg, Kenneth Veland, Beuter, L. K., Davies, S. A. & Dow, J. A. T., 2023, In: Journal of Cell Science. 136, 19, 15 p., jcs261118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    The Sea Aster mining bee Colletes halophilus Verhoeff, 1944 (Hymenoptera: Colletidae) widely distributed at the Baltic Sea coast of Denmark and Germany

    Drews, A., Adam, K., Gräper, J., Herrmann, H., Koppitz, C., Kornmilch, J., Madsen, Henning Bang, Rasmussen, C., Török, M. & Kuhlmann, M. (ed.), 2023, In: Faunistisch-Ökologische Mitteilungen. 12, p. 13-21 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    The Biology and Life Cycle of Enigmatic Crustacean Y-Larvae: A Review

    Dreyer, N., Olesen, Jørgen, Grygier, M. J., Eibye-Jacobsen, Danny, Høeg, Jens Thorvald, Kerbl, A., Fujita, Y., Kolbasov, G. A., Savchenko, A. S., Worsaae, Katrine, Palero, F. & Chan, B. K. K., 2023, Oceanography and Marine Biology: An Annual Review, Volume 61. Hawkins, S. J., Todd, P. A. & Russell, B. D. (eds.). CRC Press, p. 81-126 46 p. (Oceanography and Marine Biology, Vol. 61).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  7. Published

    Evaluation of the Impact of BaP Exposure on the Gut Microbiota and Allergic Responses in an OVA-Sensitized Mouse Model

    Du, B., Xiao, X., Wang, H., Li, W., Xia, Z., Yang, P., Huang, S. K., Yuan, R., Liu, J., Han, M., Zou, Y., Zhu, J., He, D., Lyu, J., Jin, X., Xu, X., Wang, J., Yang, H., Xiao, L., Liu, X. & 1 others, Kristiansen, Karsten, 2023, In: Environmental Health Perspectives. 131, 6, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    ClockstaRX: testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

    Research output: Working paper › Preprint › Research

  10. Published

    A YTHDF–PABP interaction is required for m6A-mediated organogenesis in plants

    Tankmar, Mathias Due, Reichel, M., Arribas Hernandez, Laura & Brodersen, Peter, 2023, In: EMBO Reports. 24, 12, 19 p., e57741.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Genomics of adaptive evolution in the woolly mammoth

    Díez-del-Molino, D., Dehasque, M., Chacón-Duque, J. C., Chrzanová Pecnerová, Patrícia, Tikhonov, A., Protopopov, A., Plotnikov, V., Kanellidou, F., Nikolskiy, P., Mortensen, P., Danilov, G. K., Vartanyan, S., Gilbert, M Thomas P, Lister, A. M., Heintzman, P. D., van der Valk, T. & Dalén, L., 2023, In: Current Biology. 33, 9, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Regulation of ARF7 in Arabidopsis thaliana during lateral root formation and pluripotency acquisition

    Ebstrup, E. N., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 102 p.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    Aquaporin water channels affect the response of conventional anticancer therapies of 3D grown breast cancer cells

    Edamana, S., Pedersen, Stine Helene Falsig & Nejsum, L. N., 2023, In: Biochemical and Biophysical Research Communications. 639, p. 126-133 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Molecular Representations in Machine-Learning-Based Prediction of PK Parameters for Insulin Analogs

    Einarson, K. A., Bendtsen, K. M., Li, K., Thomsen, M., Kristensen, N. R., Winther, Ole, Fulle, S., Clemmensen, L. & Refsgaard, H. H. F., 2023, In: ACS Omega. 8, 26, p. 23566-23578 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Regulation and impact of transcriptional variation

    Einarsson, H., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 83 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Evolutionary fine-tuning of residual helix structure in disordered proteins manifests in complex structure and lifetime

    Elkjær, Steffie Martina H, Due, Amanda Duncan, Christensen, L. F., Theisen, Frederik Friis, Staby, L., Kragelund, Birthe Brandt & Skriver, Karen, 2023, In: Communications Biology . 6, 11 p., 63.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    IgG and IgM cooperate in coating of intestinal bacteria in IgA deficiency

    Eriksen, C., Moll, J. M., Myers, P. N., Pinto, A. R. A., Danneskiold-Samsøe, Niels Banhos, Dehli, R. I., Rosholm, L. B., Dalgaard, M. D., Penders, J., Jonkers, D. M., Pan-Hammarström, Q., Hammarström, L., Kristiansen, Karsten & Brix, Susanne, 2023, In: Nature Communications. 14, 1, 12 p., 8124.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Specific gut pathobionts escape antibody coating and are enriched during flares in patients with severe Crohn's disease

    Eriksen, C., Danneskiold-Samsøe, Niels Banhos, Moll, J. M., Myers, P. N., Bondegaard, P. W., Vejrum, S., Hansen, T. B., Rosholm, L. B., Rausch, P., Allin, K. H., Jess, T., Kristiansen, Karsten, Penders, J., Jonkers, D. & Brix, S., 2023, In: Gut. 73, 3, p. 448-458 11 p., e330677.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Investigations of Migraine Treatment Targets Using Animal Models

    Ernstsen, C., 2023, Department of Biology, Faculty of Science, Chulalongkorn University. 119 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    High-resolution single-molecule long-fragment rRNA gene amplicon sequencing of bacterial and eukaryotic microbial communities

    Fang, Chao, Sun, X., Fan, F., Zhang, X., Wang, O., Zheng, Haotian, Peng, Z., Luo, X., CHEN, Ao, Zhang, W., Drmanac, R., Peters, B. A., Song, Z. & Kristiansen, Karsten, 2023, In: Cell Reports Methods. 3, 3, 16 p., 100437.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Role of charges in disordered protein complexes

    Fernandes, Catarina, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 157 p.

    Research output: Book/Report › Ph.D. thesis › Research

  22. Published

    Biofilm formation and cell plasticity drive diazotrophy in an anoxygenic phototrophic bacterium

    Fernandez Juarez, Victor, Hallstrøm, S., Pacherres, Cesar, Wang, J., Coll-Garcia, G., Kühl, Michael & Riemann, Lasse, 2023, In: Applied and Environmental Microbiology. 89, 11, p. 1-19 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Cell Plasticity of Marine Mediterranean Diazotrophs to Climate Change Factors and Nutrient Regimes

    Fernandez Juarez, Victor, Zech, E. H., Pol-Pol, E. & Agawin, N. S. R., 2023, In: Diversity. 15, 3, 18 p., 316.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The role of host pigments in coral photobiology

    Ferreira, G., Bollati, Elena & Kühl, Michael, 2023, In: Frontiers in Marine Science. 10, 14 p., 1204843.

    Research output: Contribution to journal › Review › Research › peer-review

  25. Published

    Sex-dimorphic neuroprotective effect of CD163 in an α-synuclein mouse model of Parkinson’s disease

    Ferreira, S. A., Li, Conghui, Klæstrup, I. H., Vitic, Z., Rasmussen, R. K., Kirkegaard, A., Toft, G. U., Betzer, C., Svendsen, P., Jensen, P. H., Luo, Y., Etzerodt, A., Moestrup, S. K. & Romero-Ramos, M., 2023, In: npj Parkinson's Disease. 9, 1, 21 p., 164.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Conjugative plasmids inhibit extracellular electron transfer in Geobacter sulfurreducens

    Fessler, M., Madsen, Jonas Stenløkke & Zhang, Y., 2023, In: Frontiers in Microbiology. 14, 12 p., 1150091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Insights into the conservation and diversification of the molecular functions of YTHDF proteins

    Flores-Téllez, D., Tankmar, Mathias Due, von Bülow, Sören, Chen, Junyu, Lindorff-Larsen, Kresten, Brodersen, Peter & Arribas Hernandez, Laura, 2023, In: PLOS Genetics. 19, 10, 37 p., e1010980.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Bacterial bioindicators enable biological status classification along the continental Danube river

    Fontaine, L., Pin, L., Savio, D., Friberg, N., Kirschner, A. K. T., Farnleitner, A. H. & Eiler, A., 2023, In: Communications Biology . 6, 1, 11 p., 862.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The effect of linker conformation on performance and stability of a two-domain lytic polysaccharide monooxygenase

    Forsberg, Z., Stepnov, A. A., Tesei, Giulio, Wang, Y., Buchinger, E., Kristiansen, S. K., Aachmann, F. L., Arleth, Lise, Eijsink, V. G. H., Lindorff-Larsen, Kresten & Courtade, G., 2023, In: Journal of Biological Chemistry. 299, 11, 17 p., 105262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Global determinants of insect mitochondrial genetic diversity

    French, C. M., Bertola, Laura, Carnaval, A. C., Economo, E. P., Kass, J. M., Lohman, D. J., Marske, K. A., Meier, R., Overcast, I., Rominger, A. J., Staniczenko, P. P. A. & Hickerson, M. J., 2023, In: Nature Communications. 14, 1, 15 p., 5276.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Adaptations of Pseudoxylaria towards a comb-associated lifestyle in fungus-farming termite colonies

    Fricke, J., Schalk, F., Kreuzenbeck, N. B., Seibel, E., Hoffmann, J., Dittmann, G., Conlon, B. H., Guo, H., Wilhelm de Beer, Z., Vassão, D. G., Gleixner, G., Poulsen, Michael & Beemelmanns, C., 2023, In: ISME Journal. 17, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Treated like dirt: Robust forensic and ecological inferences from soil eDNA after challenging sample storage

    Frøslev, Tobias Guldberg, Ejrnæs, R., Hansen, Anders Johannes, Bruun, Hans Henrik, Nielsen, Ida Broman, Ekelund, Flemming, Vestergård, M. & Kjøller, Rasmus, 2023, In: Environmental DNA. 5, 1, p. 158-174 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Global warming is increasing the discrepancy between green (actual) and thermal (potential) seasons of temperate trees

    Fu, Y. H., Geng, X., Chen, S., Wu, H., Hao, F., Zhang, X., Wu, Z., Zhang, J., Tang, Jing, Vitasse, Y., Zohner, C. M., Janssens, I., Stenseth, N. C. & Penuelas, J., 2023, In: Global Change Biology. 29, 5, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A targeted multi-proteomics approach generates a blueprint of the ciliary ubiquitinome

    G. Aslanyan, M., Doornbos, C., D. Diwan, G., Anvarian, Zeinab, Beyer, T., Junger, K., E. C. van Beersum, S., Russell, R., Ueffing, M., Ludwig, A., Boldt, K., Pedersen, Lotte Bang & Roepman, R., 2023, In: Frontiers in Cell and Developmental Biology. 11, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Deep-sequencing of viral genomes from a large and diverse cohort of treatment-naive HIV-infected persons shows associations between intrahost genetic diversity and viral load

    INSIGHT START Study Group, I. S. S. G., 2023, In: PLOS Computational Biology. 19, 1, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    The landscape of tolerated genetic variation in humans and primates

    Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R., Balick, D. & 77 others, Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., do Amaral, J. V., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Bataillon, T., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Lek, M., Sunyaev, S., O'Donnell-Luria, A., Rehm, H. L., Xu, J., Rogers, J., Marques-Bonet, T. & Farh, K. K. H., 2023, In: Science (New York, N.Y.). 380, 6648, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Estimating admixture pedigrees of recent hybrids without a contiguous reference genome

    Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Studies on the complex Warnowiaceae (Dinophyceae) I. Lohmann’s Pouchetia parva refound and renamed Nematodinium parvum comb. nov. (= Warnowia parva)

    García Portela, M., Moestrup, Øjvind, Daugbjerg, Niels, Altenburger, A. & Lundholm, Nina, 2023, In: Phycologia. 62, 5, p. 421-435 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Compositional breakpoints of freshwater plant communities across continents

    García-Girón, J., Heino, J., Båstrup-Spohr, Lars, Clayton, J., Winton, M. D., Feldmann, T., Fernández-Aláez, C., Ecke, F., Grillas, P., Hoyer, M. V., Kolada, A., Kosten, S., Lukács, B. A., Mjelde, M., Mormul, R. P., Rhazi, L., Rhazi, M., Sass, L., Xu, J. & Alahuhta, J., 2023, In: Limnetica. 42, 2, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Towards routine chromosome-scale haplotype-resolved reconstruction in cancer genomics

    Garg, S., 2023, In: Nature Communications. 14, 1, 11 p., 1358.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Restricted O2 consumption in pea roots induced by hexanoic acid is linked to depletion of Krebs cycle substrates

    Gargiulo, S., Casolo, V., Zancani, M., Pellegrini, Elisa, Filippi, A., Konnerup, D., Morandini, P. & Pedersen, Ole, 2023, p. 55. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  42. Published

    Eyes, Vision, and Bioluminescence in Deep-Sea Brisingid Sea Stars

    Garm, Anders Lydik, Hamilton, O., Glenner, Henrik, Irwin, Alison Ruth & Mah, C., 2023, In: Biological Bulletin. 245, 1, p. 33–44 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Slow conformational changes in the rigid and highly stable chymotrypsin inhibitor 2

    Gavrilov, Y., Prestel, Andreas, Lindorff-Larsen, Kresten & Teilum, Kaare, 2023, In: Protein Science. 32, 4, 9 p., 4604.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis

    Geissler, Adrian Sven, Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, Christian, Seemann, Ernst Stefan, Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Species-specific traits mediate avian demographic responses under past climate change

    Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2023, In: Nature Ecology and Evolution. 7, 6, p. 862-872 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Changes in the functional diversity of modern bird species over the last million years

    Germain, Ryan Ross, Feng, S., Buffan, L., Carmona, C. P., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, Zhang, G. & Nogues, David Bravo, 2023, In: PNAS. 120, 7, 9 p., e2201945119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A distinct circular DNA profile intersects with proteome changes in the genotoxic stress-related hSOD1G93A model of ALS

    Gerovska, D., Noer, Julie Boertmann, Qin, Yating, Ain, Q., Januzi, D., Schwab, M., Witte, O. W., Araúzo-Bravo, M. J. & Kretz, A., 2023, In: Cell and Bioscience. 13, 1, 25 p., 170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A comprehensive map of human glucokinase variant activity

    Gersing, S., Cagiada, Matteo, Gebbia, M., Gjesing, A. P., Coté, A. G., Seesankar, G., Li, R., Tabet, D., Weile, J., Stein, Amelie, Gloyn, A. L., Hansen, Torben, Roth, F. P., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: Genome Biology. 24, 1, 23 p., 97.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Reduced Expression Level of Protein Phosphatase PPM1E Serves to Maintain Insulin Secretion in Type 2 Diabetes

    Gheibi, S., Cataldo Bascunan, Luis Rodrigo, Hamilton, Alexander, Huang, M., Kalamajski, S., Fex, M. & Mulder, H., 2023, In: Diabetes. 72, 4, p. 455-466 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Ecological strategies of (pl)ants: Towards a world-wide worker economic spectrum for ants

    Gibb, H., Bishop, T. R., Leahy, L., Parr, C. L., Lessard, J., Sanders, N. J., Shik, Jonathan Z., Ibarra-Isassi, J., Narendra, A., Dunn, R. R. & Wright, I. J., 2023, In: Functional Ecology. 37, 1, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Using eDNA to find Micrognathozoa

    Giribet, G., Wangensteen, O. S., Garcés-Pastor, S., Møller, Peter Rask & Worsaae, Katrine, 2023, In: Current Biology. 33, 14, p. R756-R757

    Research output: Contribution to journal › Journal article › Research › peer-review

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