Department of Biology

 

 
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  1. E-pub ahead of print

    Home-field advantage of litter decomposition differs among leaves, absorptive roots, and transport roots

    Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Yuan, X., Chen, L., Lu, M., Jiang, Q., Zhao, R. & Liu, F., 2024, (E-pub ahead of print) In: Plant and Soil.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    GMD: measuring the distance between histograms with applications on high-throughput sequencing reads

    Zhao, X. & Sandelin, Albin Gustav, 2012, In: Bioinformatics. 28, 8, p. 1164-1165 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    On gene regulation in eukaryotes: computational approaches to decipher transcriptional regulation at genetic and epigenetic level

    Zhao, X., 2012, Department of Biology, Faculty of Science, University of Copenhagen. 170 p.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Systematic clustering of transcription start site landscapes

    Zhao, X., Valen, E., Parker, B. J. & Sandelin, Albin Gustav, 2011, In: P L o S One. 6, 8, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation

    Zhao, S., Zheng, P., Dong, S., Zhan, X., Wu, Q., Guo, X., Hu, Y., He, W., Zhang, S., Fan, W., Zhu, L., Li, D., Zhang, X., Chen, Q., Zhang, H., Zhang, Z., Jin, X., Zhang, J., Yang, H., Wang, J. & 2 others, Wang, J. & Wei, F., 2013, In: Nature Genetics. 45, 1, p. 67-71 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  6. Published

    A Membrane-Associated DHH-DHHA1 Nuclease Degrades Type III CRISPR Second Messenger

    Zhao, R., Yang, Y., Zheng, F., Zeng, Z., Feng, W., Jin, X., Wang, J., Yang, K., Liang, Y. X., She, Q. & Han, W., 2020, In: Cell Reports. 32, 11, 16 p., 108133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Rare inborn errors associated with chronic hepatitis B virus infection

    Zhao, Q., Peng, L., Huang, W., Li, Q., Pei, Y., Yuan, P., Zheng, L., Zhang, Y., Deng, J., Zhong, C., Hu, B., Ding, H., Fang, W., Li, R., Liao, Q., Lin, C., Deng, W., Yan, H., Hou, J., Wu, Q. & 17 others, Xu, T., Liu, J., Hu, L., Peng, T., Chen, S., Lai, K. N., Yuen, M., Wang, Y., Maini, M. K., Li, C., Li, M., Wang, J., Zhang, X., Sham, P., Wang, J., Gao, Z. & Wang, Y., 2012, In: Hepatology. 56, 5, p. 1661-1670 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma

    Zhao, L-H., Liu, X., Yan, H-X., Li, W-Y., Zeng, X., Yang, Y., Zhao, J., Liu, S-P., Zhuang, X-H., Lin, C., Qin, C-J., Zhao, Y., Pan, Z-Y., Huang, G., Liu, H., Zhang, J., Wang, R-Y., Yang, Y., Wen, W., Lv, G-S. & 21 others, Zhang, H., Wu, H., Huang, S., Wang, M., Tang, L., Cao, H., Wang, L., Lee, T. P., Jiang, H., Tan, Y., Yuan, S., Hou, G., Tao, Q., Xu, Q., Zhang, X., Wu, M., Xu, X., Wang, J., Yang, H., Zhou, W. & Wang, H., 2016, In: Nature Communications. 7, 9 p., 12992.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Comparative transcriptome studies reveal mitochondrial role in lung cancer classification and mechanism in cancer-resistant species: Transcriptomics studies on cancer-resistant species

    Zhao, J., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 130 p.

    Research output: Book/Report › Ph.D. thesis › Research

  10. Published

    Reply to: Transformation of naked mole-rat cells

    Zhao, J., Tian, X., Zhu, Y., Zhang, Z., Rydkina, E., Yuan, Y., Zhang, H., Roy, B., Cornwell, A., Nevo, E., Shang, X., Huang, R., Kristiansen, Karsten, Seluanov, A., Fang, X. & Gorbunova, V., 2020, In: Nature. 583, 7814, p. E8-E13

    Research output: Contribution to journal › Letter › Research › peer-review

  11. Published

    Next generation sequencing facilitates the mining of genomic information in a clinical pathogen (Clostridium difficile) and the viromes of wildlife bats and rodents

    Zhao, Hailong, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 127 p.

    Research output: Book/Report › Ph.D. thesis › Research

  12. Published

    Global Landscape of Clostridioides Difficile Phylogeography, Antibiotic Susceptibility, and Toxin Polymorphisms by Post-Hoc Whole-Genome Sequencing from the MODIFY I/II Studies

    Zhao, Hailong, Nickle, D. C., Zeng, Z., Law, P. Y. T., Wilcox, M. H., Chen, L., Peng, Y., Meng, J., Deng, Z., Albright, A., Zhong, H., Xu, X., Zhu, S., Shen, J., Blanchard, R. L., Dorr, M. B., Shaw, P. M. & Li, J., 2021, In: Infectious Diseases and Therapy. 10, 2, p. 853-870 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Comparative transcriptome analysis of PBMC from HIV patients pre- and post-antiretroviral therapy

    Zhao, F., Ma, J., Huang, L., Deng, Y., Li, L., Zhou, Y., Li, J., Li, S., Jiang, H., Yang, H., Gao, S., Wang, H. & Liu, Y., Jun 2017, In: Meta Gene. 12, p. 50-61 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Intake of a Chicken Protein-Based or Soy Protein-Based Diet Differentially Affects Growth Performance, Absorptive Capacity, and Gut Microbiota in Young Rats

    Zhao, Fan, Wang, Chong, Song, S., Fang, C., Kristiansen, Karsten & Li, C., 2022, In: Molecular Nutrition and Food Research. 66, 13, 14 p., 2101124.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Proteomics and Metabolomics Profiling of Pork Exudate Reveals Meat Spoilage during Storage

    Zhao, Fan, Wei, Z., Bai, Y., Li, C., Zhou, G., Kristiansen, Karsten & Wang, Chong, 2022, In: Metabolites. 12, 7, 15 p., 570.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Casein and red meat proteins differentially affect the composition of the gut microbiota in weaning rats

    Zhao, Fan, Wang, Chong, Song, S., Fang, C., Zhou, G., Li, C. & Kristiansen, Karsten, 2022, In: Food Chemistry. 397, 11 p., 133769.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Dietary Protein Sources Differentially Affect the Growth of Akkermansia muciniphila and Maintenance of the Gut Mucus Barrier in Mice

    Zhao, F., Zhou, G., Liu, X., Song, S., Xu, X., Hooiveld, G., Müller, M., Liu, L., Kristiansen, Karsten & Li, C., 2019, In: Molecular Nutrition & Food Research. 63, 23, 11 p., 1900589.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Effects of Different Storage Temperatures on Bacterial Communities and Functional Potential in Pork Meat

    Zhao, Fan, Wei, Z., Zhou, G., Kristiansen, Karsten & Wang, Chong, 2022, In: Foods. 11, 15, 12 p., 2307.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor

    Zhao, C., Escalante, L. N., Chen, H., Benatti, T. R., Qu, J., Chellapilla, S., Waterhouse, R. M., Wheeler, D., Andersson, M. N., Bao, R., Batterton, M., Behura, S. K., Blankenburg, K. P., Caragea, D., Carolan, J. C., Coyle, M., El-Bouhssini, M., Francisco, L., Friedrich, M., Gill, N. & 49 others, Grace, T., Grimmelikhuijzen, Cornelis (Cok), Han, Y., Hauser, Frank, Herndon, N., Holder, M., Ioannidis, P., Jackson, L., Javaid, M., Jhangiani, S. N., Johnson, A. J., Kalra, D., Korchina, V., Kovar, C. L., Lara, F., Lee, S. L., Liu, X., Löfstedt, C., Mata, R., Mathew, T., Muzny, D. M., Nagar, S., Nazareth, L. V., Okwuonu, G., Ongeri, F., Perales, L., Peterson, B. F., Pu, L., Robertson, H. M., Schemerhorn, B. J., Scherer, S. E., Shreve, J. T., Simmons, D., Subramanyam, S., Thornton, R. L., Xue, K., Weissenberger, G. M., Williams, C. E., Worley, K. C., Zhu, D., Zhu, Y., Harris, M. O., Shukle, R. H., Werren, J. H., Zdobnov, E. M., Chen, M., Brown, S. J., Stuart, J. J. & Richards, S., 2015, In: Current biology : CB. 25, 5, p. 613-620 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Herbivore dung deposition increases soil respiration through elevated substrate availability and microbial biomass

    Zhang, Z., Zhang, S. & Rinnan, Riikka, 2024, In: Applied Soil Ecology. 194, 10 p., 105203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Green waste and sewage sludge feeding ratio alters co-composting performance: Emphasis on the role of bacterial community during humification

    Zhang, Z., Duan, C., Liu, Y., Li, A., Hu, X., Chen, J., Zhang, S., Li, X., Che, R., Li, S., Ekelund, Flemming & Cui, X., 2023, In: Bioresource Technology. 380, 10 p., 129014.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    (p)ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch

    ZHANG, YONG, Bærentsen, R. L., Fuhrer, T., Sauer, U., Gerdes, K. & Brodersen, D. E., 2019, In: Molecular Cell. 74, 6, p. 1239-1249, e1-e4

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli

    ZHANG, YONG, Zbornikova, E., Rejman, D. & Gerdes, K., 2018, In: mBio. 9, 2, 20 p., e02188-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles

    Zhang, Yong, Chen, Y., Xu, H., Fang, J., Zhao, Z., Hu, W., Yang, X., Ye, J., Cheng, Y., Wang, J., Sun, W., Wang, J., Yang, H., Yan, J. & Fang, L., 2020, In: BMC Bioinformatics. 21, 9 p., 295.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    A bacterial ras-like small GTP-binding protein and its cognate GAP establish a dynamic spatial polarity axis to control directed motility

    ZHANG, YONG, Franco, M., Ducret, A. & Mignot, T., Jul 2010, In: PLOS Biology. 8, 7

    Research output: Contribution to journal › Journal article › Research › peer-review

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