Department of Biology

 

 
  1. Published

    DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices

    da Piedade, I., Tang, M. E. & Elemento, O., 2009, In: BMC Bioinformatics. 10, 388, 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    Computational approches to discover and characterize core elements and trascription factr binding sites in eukaryotes

    da Piedade, I., 2009, Museum Tusculanum. 130 p.

    Research output: Book/ReportPh.D. thesisResearch

  3. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

    Rodrigues da Fonseca, Rute Andreia, Urena, I., Afonso, S., Pires, A. E., Jørsboe, E., Chikhi, L. & Ginja, C., 2019, In: BMC Genomics. 20, p. 1-13 334.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia

    Rodrigues da Fonseca, Rute Andreia, Campos, P. F., Rey de la Iglesia, Alba, Barroso, G. V., Bergeron, Lucie Adrienne, Nande, M., Tuya, F., Abidli, S., Pérez, M., Riveiro, I., Carrera, P., Jurado-Ruzafa, A., Santamaría, M. T. G., Faria, R., Machado, A. M., Fonseca, M. M., Froufe, E. & Castro, L. F. C., 2024, In: Genes. 15, 2, 15 p., 170.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Symbiotic Plant Biomass Decomposition in Fungus-Growing Termites

    da Costa, R. R., Hu, H., Li, H. & Poulsen, Michael, 2019, In: Insects. 10, 4, 15 p., 87.

    Research output: Contribution to journalReviewResearchpeer-review

  7. Published

    Can interaction specificity in the fungus-farming termite symbiosis be explained by nutritional requirements of the fungal crop?

    da Costa, R. R., Vreeburg, S. M. E., Shik, Jonathan Z., Aanen, D. K. & Poulsen, Michael, 2019, In: Fungal Ecology. 38, p. 54-61

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    A dual-reporter system for investigating and optimizing protein translation and folding in E. coli

    Zutz, A., Hamborg, L., Pedersen, L. E., Kassem, M. M., Papaleo, E., Koza, A., Herrgård, M. J., Ingemann Jensen, S., Teilum, Kaare, Lindorff-Larsen, Kresten & Nielsen, A. T., 2021, In: Nature Communications. 12, 15 p., 6093.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers

    Zupancic, J., Raghupathi, P. K., Houf, K., Burmølle, Mette, Sørensen, Søren Johannes & Gunde-Cimerman, N., 2018, In: Frontiers in Microbiology. 9, 13 p., 21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes

    Zuo, Zhangli Thomsen, Roux, M. E., Sæmundsson, H. P., Müller, M., Bosch, S. M. & Petersen, Morten, 2021, In: FEBS Letters. 595, 2, p. 253-263 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review