- Published
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
Zhu, Z., Noel, S. J., Difford, G. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 8 Nov 2017, In: PLoS ONE. 12, 11, 24 p., e0187858.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows
Zhu, Z., Kristensen, L., Difford, G. F., Poulsen, M., Noel, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 2018, In: Journal of Dairy Science. 101, 11, p. 9847-9862Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions
Zhu, X., Wirén, M., Sinha, I., Rasmussen, N. N., Linder, T., Holmberg, Steen, Ekwall, K. & Gustafsson, C. M., 2006, In: Molecular Cell. 22, 2, p. 169-78 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A putative ABC transporter is involved in negative regulation of biofilm formation by Listeria monocytogenes.
Zhu, X., Long, F., Chen, Y., Knoechel, Susanne, She, Q. & Shi, X., 2008, In: Applied and Environmental Microbiology. 74, 24, p. 7675-7683Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation
Zhu, X., Liu, W., Lametsch, Rene, Aarestrup, F. M., Shi, C., She, Q., Shi, X. & Knoechel, Susanne, 2011, In: Foodborne Pathogens and Disease. 8, 4, p. 495-501 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa
Zhu, J., Tian, L., Chen, P., Han, M., Song, L., Tong, X., Sun, X., Yang, F., Lin, Z., Liu, X., Liu, C., Wang, X., Lin, Y., Cai, K., Hou, Y., Xu, X., Yang, H., Wang, J., Kristiansen, K., Xiao, L. & 3 others, , 2022, In: Genomics, Proteomics and Bioinformatics. 20, 2, p. 246-259Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Expanded Gene Catalog of Mouse Gut Metagenomes
Zhu, J., Ren, H., Zhong, H., Li, Xiaoping, Zou, Y., Han, Mo, Li, M., Madsen, L., Kristiansen, Karsten & Xiao, L., 2021, In: mSphere. 6, 1, 12 p., e-01119-20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice
Zhu, F., Guo, R., Wang, W., Ju, Y., Wang, Q., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Liu, B., Guo, L., He, X., Chen, Y., Chen, C. & 10 others, , 2020, In: Molecular Psychiatry. 25, 11, p. 2905-2918 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenome-wide association of gut microbiome features for schizophrenia
Zhu, F., Ju, Y., Wang, W., Wang, Q., Guo, R., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Feng, J., Guo, L., He, X., Chen, Y., Chen, C. & 10 others, , 2020, In: Nature Communications. 11, 10 p., 1612.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival
Zhu, C., Sun, B., Liu, T., Zheng, H., Gu, W., He, W., Sun, F., Wang, Y., Yang, M., Bei, W., Peng, Xu, She, Q., Xie, L. & Chen, L., 5 Jun 2017, In: BMC Genomics. 18, 19 p., 436.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds
Zhu, C., Miller, M., Lusskin, N., Bergk Pinto, B., Maccario, Lorrie, Häggblom, M., Vogel, T., Larose, C. & Bromberg, Y., 2020, In: MicrobiologyOpen. 9, 9, e1100.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community
Zhou, Y., Pope, P. B., Li, S., Wen, B., Tan, F., Cheng, S., Chen, J., Yang, J., Liu, F., Lei, X., Su, Q., Zhou, C., Zhao, J., Dong, X., Jin, T., Zhou, X., Yang, S., Zhang, G., Yang, H., Wang, J. & 3 others, , 2014, In: Scientific Reports. 4, 6 p., 5288.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Platypus and echidna genomes reveal mammalian biology and evolution
Zhou, Y., Shearwin-Whyatt, L., Li, J., Song, Z., Hayakawa, T., Stevens, D., Fenelon, J. C., Peel, E., Cheng, Y., Pajpach, F., Bradley, N., Suzuki, H., Nikaido, M., Damas, J., Daish, T., Perry, T., Zhu, Z., Geng, Y., Rhie, A., Sims, Y. & 22 others, , 2021, In: Nature. 592, 7856, p. 756-762Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Eighty million years of rapid evolution of the primate Y chromosome
Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N., Qi, X. & 3 others, , 2023, In: Nature Ecology and Evolution. 7, 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Monotreme Genomes Provide Insights into the Evolution of Early Mammal and Monotreme Sex Chromosomes System
Zhou, Y., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations
Zhou, X., Sun, F., Xu, S., Fan, G., Zhu, K., Liu, X., Chen, Y., Shi, C., Yang, Y., Huang, Z., Chen, J., Hou, H., Guo, X., Chen, W., Chen, Y., Wang, X., Lv, T., Yang, D., Zhou, J., Huang, B. & 17 others, , 2013, In: Nature Communications. 4, 6 p., 2708.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dss1 interaction with Brh2 as a regulatory mechanism for recombinational repair.
Zhou, Q., Kojic, M., Cao, Z., Lisby, Michael, Mazloum, N. A. & Holloman, W. K., 2007, In: Molecular and Cellular Biology. 27, 7, p. 2512-26 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell RNA-seq reveals distinct dynamic behavior of sex chromosomes during early human embryogenesis
Zhou, Q., Wang, T., Leng, L., Zheng, W., Huang, J., Fang, F., Yang, L., Chen, F., Lin, G., Wang, W. & Kristiansen, Karsten, 2019, In: Molecular Reproduction and Development. 86, 7, p. 871-882Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maternal and paternal contribution to the development of human preimplantation embryos
Zhou, Q., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Complex evolutionary trajectories of sex chromosomes across bird taxa
Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, 8 p., 1246338.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Myosin heavy chain isoforms of human muscle after short-term spaceflight.
Zhou, M., Klitgaard, H., Saltin, B., Roy, R. R., Edgerton, V. R. & Gollnick, P. D., 1995, In: Journal of Applied Physiology. 78(5), p. 1740-1744Research output: Contribution to journal › Journal article › Research
- Published
Identification and application of bioactive components in meat hydrolysates that induce gastrointestinal signalling and release of incretins
Zhou, J., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Whole Genome Sequencing in the Evaluation of Fetal Structural Anomalies: A Parallel Test with Chromosomal Microarray Plus Whole Exome Sequencing
Zhou, J., Yang, Z., Sun, J., Liu, L., Zhou, X., Liu, F., Xing, Y., Cui, S., Xiong, S., Liu, X., Yang, Y., Wei, X., Zou, G., Wang, Z., Wei, X., Wang, Y., Zhang, Y., Yan, S., Wu, F., Zeng, F. & 4 others, , 2021, In: Genes. 12, 3, 14 p., 376.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physical and bacterial controls on inorganic nutrients and dissolved organic carbon during a sea ice growth and decay experiment
Zhou, J., Delille, B., Kaartokallio, H., Kattner, G., Kuosa, H., Tison, J. -., Autio, R., Dieckmann, G. S., Evers, K., Jørgensen, L., Kennedy, H., Kotovitch, M., Luhtanen, A. -., Stedmon, C. A. & Thomas, D. N., 2014, In: Marine Chemistry. 166, p. 59-69 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A comprehensive evaluation of hydrological processes in a second-generation dynamic vegetation model
Zhou, H., Tang, Jing, Olin, S. & Miller, P. A., 2024, In: Hydrological Processes. 38, 4, 17 p., e15152.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Neoadjuvant chemotherapy alters peripheral and tumour-infiltrating immune cells in breast cancer revealed by single-cell RNA sequencing
Zhou, H., Li, G., Yin, J., Wang, T., Hu, H., Li, T., Zhou, Q., Hu, J., Wang, L., Dong, S., Wei, C., Zhang, C., Lu, Y., Zhou, W., Huang, C., Yang, H., Zhou, D., Wang, L. & Wu, K., 2021, In: Clinical and Translational Medicine. 11, 12, 6 p., e621.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Metabolic Inactivity and Re-awakening of a Nitrate Reduction Dependent Iron(II)-Oxidizing Bacterium Bacillus ferrooxidans
Zhou, G., Yang, X. R., Rønn, Regin, Su, J., Cui, L., Zheng, B. & Zhu, Y., 2019, In: Frontiers in Microbiology. 10, 10 p., 1494.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Performance characterization of PCR-free whole genome sequencing for clinical diagnosis
Zhou, G., Zhou, M., Zeng, F., Zhang, N., Sun, Y., Qiao, Z., Guo, X., Zhou, S., Yun, G., Xie, J., Wang, X., Liu, F., Fan, C., Wang, Y., Fang, Z., Tian, Z., Dai, W., Sun, J., Peng, Z. & Song, L., 2022, In: Medicine. 101, 10, 8 p., e28972.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep sequencing of the MHC region in the Chinese population contributes to studies of complex disease
Zhou, F., Cao, H., Zuo, X., Zhang, T., Zhang, X., Liu, X., Xu, R., Chen, G., Zhang, Y., Zheng, X., Jin, X., Gao, J., Mei, J., Sheng, Y., Li, Q., Liang, B., Shen, J., Shen, C., Jiang, H., Zhu, C. & 53 others, , 2016, In: Nature Genetics. 48, 7, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics
Zhong, H., Ren, H., Lu, Y., Fang, C., Hou, G., Yang, Z., Chen, B., Yang, F., Zhao, Y., Shi, Z., Zhou, B., Wu, J., Zou, H., Zi, J., Chen, J., Bao, X., Hu, Y., Gao, Y., Zhang, J., Xu, X. & 10 others, , 2019, In: EBioMedicine. 47, p. 373-383 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of respiratory microbial dysbiosis in hospitalized COVID-19 patients
Zhong, H., Wang, Y., Shi, Z., Zhang, L., Ren, H., He, W., Zhang, Z., Zhu, A., Zhao, J., Xiao, F., Yang, F., Liang, T., Ye, F., Zhong, B., Ruan, S., Gan, M., Zhu, J., Li, F., Li, F., Wang, D. & 13 others, , 2021, In: Cell Discovery. 7, 14 p., 23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children
Zhong, H., Penders, J., Shi, Z., Ren, H., Cai, K., Fang, Chao, Ding, Q., Thijs, C., Blaak, E. E., Stehouwer, C. D. A., Xu, X., Yang, H., Wang, J., Wang, J., Jonkers, D. M. A. E., Masclee, A. A. M., Brix, S., Li, J., Arts, I. C. W. & Kristiansen, Karsten, 2019, In: Microbiome. 7, p. 1-14 2.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lipidomic profiling reveals distinct differences in plasma lipid composition in healthy, prediabetic, and type 2 diabetic individuals
Zhong, H., Fang, C., Fan, Y., Lu, Y., Wen, B., Ren, H., Hou, G., Yang, F., Xie, H., Jie, Z., Peng, Y., Ye, Z., Wu, J., Zi, J., Zhao, G., Chen, J., Bao, X., Hu, Y., Gao, Y., Zhang, J. & 7 others, , Jul 2017, In: GigaScience. 6, 7, p. 1-12 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multi-omics association studies on type 2 diabetes
Zhong, H., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 171 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The origin of domestication genes in goats
Zheng, Z., Wang, X., Li, M., Li, Y., Yang, Z., Wang, X., Pan, X., Gong, M., Zhang, Y., Guo, Y., Wang, Y., Liu, J., Cai, Y., Chen, Q., Okpeku, M., Colli, L., Cai, D., Wang, K., Huang, S., Sonstegard, T. S. & 16 others, , 2020, In: Science Advances. 6, 21, eaaz5216.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Engineering of phi29 DNA polymerase with elevated thermostability and replication activity
Zheng, Y., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Sequencing, annotation and comparative analysis of nine BACs of giant panda (Ailuropoda melanoleuca)
Zheng, Y., Cai, J., Li, J., Li, B., Lin, R., Tian, F., Wang, X. & Wang, J., 2010, In: Science China Life Sciences. 53, 1, p. 107-111 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes
Zheng, X., Zhao, Q., Wu, H., Li, W., Wang, H., Meyer, C. A., Qin, Q. A., Xu, H., Zang, C., Jiang, P., Li, F., Hou, Y., He, J., Wang, J., Wang, J., Zhang, P., Zhang, Y. & Liu, X. S., 2014, In: Genome Biology (Online Edition). 15, 8, 13 p., 419.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Systematical analysis reveals a strong cancer relevance of CREB1-regulated genes
Zheng, T., Huang, J., Xiang, X., Li, S., Yu, J., Qu, K., Xu, Z., Han, P., Dong, Z., Liu, Y., Xu, F., Yang, H., Jäättelä, M., Luo, Y. & Liu, B., 2021, In: Cancer Cell International. 21, 16 p., 530.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development of a Simvastatin Selection Marker for a Hyperthermophilic Acidophile, Sulfolobus islandicus
Zheng, T., Huang, Q., Zhang, C., Ni, J., She, Q. & Shen, Y., 2012, In: Applied and Environmental Microbiology. 78, 2, p. 568-574 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Expression of genes and enzymes involved in ovarian steroidogenesis in relation to human follicular development
Zheng, M., tcg964, tcg964, Rasmussen, F. R., Cadenas, J., Christensen, Søren Tvorup & Mamsen, L. S., 2023, In: Frontiers in Endocrinology. 14, 17 p., 1268248.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effective noninvasive zygosity determination by maternal plasma target region sequencing
Zheng, J., Xu, C., Guo, J., Wei, Y., Ge, H., Li, X., Zhang, C., Jiang, H., Pan, L., Tang, W., Xie, W., Zhang, H., Zhao, Y., Jiang, F., Chen, S., Wang, W., Xu, X., Chen, F., Huang, H. & Jiang, H., 2013, In: P L o S One. 8, 6, 6 p., e65050.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three novel structural variations at the major histocompatibility complex and IL12B predispose to psoriasis
Zhen, Q., Zhang, Y., Yu, Y., Yang, H., Zhang, T., Li, X., Mo, X., Li, B., Wu, J., Liang, Y., Ge, H., Xu, Q., Chen, W., Qian, W., Xu, H., Chen, G., Bai, B., Zhang, J., Lu, Y., Chen, S. & 31 others, , 2022, In: British Journal of Dermatology. 186, 2, p. 307-317 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of multiple cell clones over a 29-year period of a CLL patient
Zhao, Z., Goldin, L., Liu, S., Wu, L., Zhou, W., Lou, H., Yu, Q., Tsang, S. X., Jiang, M., Li, F., McMaster, M., Li, Y., Lin, X., Wang, Z., Xu, L., Marti, G., Li, G., Wu, K., Yeager, M., Yang, H. & 6 others, , 2016, In: Nature Communications. 7, 10 p., 13765.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exome sequencing and linkage analysis identified Tenascin-C (TNC) as a novel causative gene in nonsyndromic hearing loss
Zhao, Y., Zhao, F., Zong, L., Zhang, P., Guan, L., Zhang, J., Wang, D., Wang, J., Chai, W., Lan, L., Li, Q., Han, B., Yang, L., Jin, X., Yang, W., Hu, X., Wang, X., Li, N., Li, Y., Petit, C. & 4 others, , 2013, In: P L o S One. 8, 7, 8 p., e69549.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploration of Intratumor Heterogeneity and Tumoral Microenvironment in Non-small Cell Lung Cancer
Zhao, X., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 137 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations
Zhao, X., Qu, Kunli, Curci, B., Yang, H., Bolund, L., Lin, L. & Luo, Y., 2023, In: Biomolecules. 13, 5, 15 p., 870.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fine roots and extramatrical mycelia regulate the composition of soil organic carbon and nitrogen in a subtropical montane forest
Zhao, X., Tian, Q., Michelsen, Anders, Chen, L., Yue, P., Feng, Z., Lin, Q., Zhao, R. & Liu, F., 2024, In: Forest Ecology and Management. 554, 8 p., 121661.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effects of mycorrhizal associations on fine root decomposition in temperate and (sub)tropical forests
Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Zhao, R., Yuan, X., Chen, L., Zuo, J. & Liu, F., 2023, In: Plant and Soil. 487, 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of experimental warming on fine root functional traits of woody plants: Data synthesis
Zhao, X., Tian, Q., Michelsen, Anders, Lu, M., Ren, B., Huang, L. & Zhao, R., 2023, In: Science of the Total Environment. 894, 9 p., 165003.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Home-field advantage of litter decomposition differs among leaves, absorptive roots, and transport roots
Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Yuan, X., Chen, L., Lu, M., Jiang, Q., Zhao, R. & Liu, F., 2024, (E-pub ahead of print) In: Plant and Soil.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GMD: measuring the distance between histograms with applications on high-throughput sequencing reads
Zhao, X. & Sandelin, Albin Gustav, 2012, In: Bioinformatics. 28, 8, p. 1164-1165 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On gene regulation in eukaryotes: computational approaches to decipher transcriptional regulation at genetic and epigenetic level
Zhao, X., 2012, Department of Biology, Faculty of Science, University of Copenhagen. 170 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Systematic clustering of transcription start site landscapes
Zhao, X., Valen, E., Parker, B. J. & Sandelin, Albin Gustav, 2011, In: P L o S One. 6, 8, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation
Zhao, S., Zheng, P., Dong, S., Zhan, X., Wu, Q., Guo, X., Hu, Y., He, W., Zhang, S., Fan, W., Zhu, L., Li, D., Zhang, X., Chen, Q., Zhang, H., Zhang, Z., Jin, X., Zhang, J., Yang, H., Wang, J. & 2 others, , 2013, In: Nature Genetics. 45, 1, p. 67-71 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
A Membrane-Associated DHH-DHHA1 Nuclease Degrades Type III CRISPR Second Messenger
Zhao, R., Yang, Y., Zheng, F., Zeng, Z., Feng, W., Jin, X., Wang, J., Yang, K., Liang, Y. X., She, Q. & Han, W., 2020, In: Cell Reports. 32, 11, 16 p., 108133.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rare inborn errors associated with chronic hepatitis B virus infection
Zhao, Q., Peng, L., Huang, W., Li, Q., Pei, Y., Yuan, P., Zheng, L., Zhang, Y., Deng, J., Zhong, C., Hu, B., Ding, H., Fang, W., Li, R., Liao, Q., Lin, C., Deng, W., Yan, H., Hou, J., Wu, Q. & 17 others, , 2012, In: Hepatology. 56, 5, p. 1661-1670 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma
Zhao, L-H., Liu, X., Yan, H-X., Li, W-Y., Zeng, X., Yang, Y., Zhao, J., Liu, S-P., Zhuang, X-H., Lin, C., Qin, C-J., Zhao, Y., Pan, Z-Y., Huang, G., Liu, H., Zhang, J., Wang, R-Y., Yang, Y., Wen, W., Lv, G-S. & 21 others, , 2016, In: Nature Communications. 7, 9 p., 12992.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative transcriptome studies reveal mitochondrial role in lung cancer classification and mechanism in cancer-resistant species: Transcriptomics studies on cancer-resistant species
Zhao, J., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 130 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Reply to: Transformation of naked mole-rat cells
Zhao, J., Tian, X., Zhu, Y., Zhang, Z., Rydkina, E., Yuan, Y., Zhang, H., Roy, B., Cornwell, A., Nevo, E., Shang, X., Huang, R., Kristiansen, Karsten, Seluanov, A., Fang, X. & Gorbunova, V., 2020, In: Nature. 583, 7814, p. E8-E13Research output: Contribution to journal › Letter › Research › peer-review
- Published
Next generation sequencing facilitates the mining of genomic information in a clinical pathogen (Clostridium difficile) and the viromes of wildlife bats and rodents
Zhao, Hailong, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 127 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Global Landscape of Clostridioides Difficile Phylogeography, Antibiotic Susceptibility, and Toxin Polymorphisms by Post-Hoc Whole-Genome Sequencing from the MODIFY I/II Studies
Zhao, Hailong, Nickle, D. C., Zeng, Z., Law, P. Y. T., Wilcox, M. H., Chen, L., Peng, Y., Meng, J., Deng, Z., Albright, A., Zhong, H., Xu, X., Zhu, S., Shen, J., Blanchard, R. L., Dorr, M. B., Shaw, P. M. & Li, J., 2021, In: Infectious Diseases and Therapy. 10, 2, p. 853-870 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative transcriptome analysis of PBMC from HIV patients pre- and post-antiretroviral therapy
Zhao, F., Ma, J., Huang, L., Deng, Y., Li, L., Zhou, Y., Li, J., Li, S., Jiang, H., Yang, H., Gao, S., Wang, H. & Liu, Y., Jun 2017, In: Meta Gene. 12, p. 50-61 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intake of a Chicken Protein-Based or Soy Protein-Based Diet Differentially Affects Growth Performance, Absorptive Capacity, and Gut Microbiota in Young Rats
Zhao, Fan, Wang, Chong, Song, S., Fang, C., Kristiansen, Karsten & Li, C., 2022, In: Molecular Nutrition and Food Research. 66, 13, 14 p., 2101124.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proteomics and Metabolomics Profiling of Pork Exudate Reveals Meat Spoilage during Storage
Zhao, Fan, Wei, Z., Bai, Y., Li, C., Zhou, G., Kristiansen, Karsten & Wang, Chong, 2022, In: Metabolites. 12, 7, 15 p., 570.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Casein and red meat proteins differentially affect the composition of the gut microbiota in weaning rats
Zhao, Fan, Wang, Chong, Song, S., Fang, C., Zhou, G., Li, C. & Kristiansen, Karsten, 2022, In: Food Chemistry. 397, 11 p., 133769.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dietary Protein Sources Differentially Affect the Growth of Akkermansia muciniphila and Maintenance of the Gut Mucus Barrier in Mice
Zhao, F., Zhou, G., Liu, X., Song, S., Xu, X., Hooiveld, G., Müller, M., Liu, L., Kristiansen, Karsten & Li, C., 2019, In: Molecular Nutrition & Food Research. 63, 23, 11 p., 1900589.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of Different Storage Temperatures on Bacterial Communities and Functional Potential in Pork Meat
Zhao, Fan, Wei, Z., Zhou, G., Kristiansen, Karsten & Wang, Chong, 2022, In: Foods. 11, 15, 12 p., 2307.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor
Zhao, C., Escalante, L. N., Chen, H., Benatti, T. R., Qu, J., Chellapilla, S., Waterhouse, R. M., Wheeler, D., Andersson, M. N., Bao, R., Batterton, M., Behura, S. K., Blankenburg, K. P., Caragea, D., Carolan, J. C., Coyle, M., El-Bouhssini, M., Francisco, L., Friedrich, M., Gill, N. & 49 others, , 2015, In: Current biology : CB. 25, 5, p. 613-620 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Herbivore dung deposition increases soil respiration through elevated substrate availability and microbial biomass
Zhang, Z., Zhang, S. & Rinnan, Riikka, 2024, In: Applied Soil Ecology. 194, 10 p., 105203.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Green waste and sewage sludge feeding ratio alters co-composting performance: Emphasis on the role of bacterial community during humification
Zhang, Z., Duan, C., Liu, Y., Li, A., Hu, X., Chen, J., Zhang, S., Li, X., Che, R., Li, S., Ekelund, Flemming & Cui, X., 2023, In: Bioresource Technology. 380, 10 p., 129014.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
(p)ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch
ZHANG, YONG, Bærentsen, R. L., Fuhrer, T., Sauer, U., Gerdes, K. & Brodersen, D. E., 2019, In: Molecular Cell. 74, 6, p. 1239-1249, e1-e4Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli
ZHANG, YONG, Zbornikova, E., Rejman, D. & Gerdes, K., 2018, In: mBio. 9, 2, 20 p., e02188-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles
Zhang, Yong, Chen, Y., Xu, H., Fang, J., Zhao, Z., Hu, W., Yang, X., Ye, J., Cheng, Y., Wang, J., Sun, W., Wang, J., Yang, H., Yan, J. & Fang, L., 2020, In: BMC Bioinformatics. 21, 9 p., 295.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A bacterial ras-like small GTP-binding protein and its cognate GAP establish a dynamic spatial polarity axis to control directed motility
ZHANG, YONG, Franco, M., Ducret, A. & Mignot, T., Jul 2010, In: PLOS Biology. 8, 7Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Upretia squamulosa, a new lichen species from the arid valley of Jinsha-Jiang river, China
Zhang, Y. Y., Wang, X. Y., Li, L. J., Søchting, Ulrik, Yin, A. C., Wang, S. Q. & Wang, L. S., 8 May 2019, In: Phytotaxa. 402, 6, p. 288-294 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inactivation of Target RNA Cleavage of a III-B CRISPR-Cas System Induces Robust Autoimmunity in Saccharolobus islandicus
Zhang, Y., Lin, Jinzhong, Tian, X., Wang, Y., Zhao, R., Wu, C., Wang, X., Zhao, P., Bi, X., Yu, Z., Han, W., Peng, N., Liang, Y. X. & She, Q., 2022, In: International Journal of Molecular Sciences . 23, 15, 16 p., 8515.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Life history responses of Daphnia magna feeding on toxic Microcystis aeruginosa alone and mixed with a mixotrophic Poterioochromonas species
Zhang, X., Perlt, Trine Warming, Hu, H. & Christoffersen, Kirsten Seestern, 2009, In: Water Research. 43, 20, p. 5053-62 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of Poterioochromonas abundance on production of intra- and extracellular microcystin-LR concentration
Zhang, X., Hu, H., Men, Y. & Christoffersen, Kirsten Seestern, 2010, In: Hydrobiologia. 652, 1, p. 237-246 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Feeding characteristics of a golden alga (Poterioochromonas sp.) grazing on toxic cyanobacterium Microcystis aeruginosa
Zhang, X., Hu, H., Men, Y., Yang, J. & Christoffersen, Kirsten Seestern, 2009, In: Water Research. 43, 12, p. 2953-60 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Life history response of Daphnia magna to a mixotrophic golden alga, Poterioochromonas sp., at different food levels
Zhang, X., Hu, H., Perlt, Trine Warming & Christoffersen, Kirsten Seestern, 2011, In: Bulletin of Environmental Contamination and Toxicology. 87, 2, p. 117-123 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
Zhang, X., Zhang, D., Jia, H., Feng, Q., Wang, D., Liang, D., Wu, X., Li, J., Tang, L., Li, Y., Lan, Z., Chen, B., Li, Y., Zhong, H., Xie, H., Jie, Z., Chen, W., Tang, S., Xu, X., Wang, X. & 28 others, , 2015, In: Nature Medicine. 21, 8, p. 895-905 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analysis reveals crosstalk between gut microbiota and glucose-lowering drugs targeting the gastrointestinal tract in Chinese patients with type 2 diabetes: a 6 month, two-arm randomised trial
Zhang, X., Ren, H., Zhao, C., Shi, Z., Qiu, L., Yang, F., Zhou, X., Han, X., Wu, K., Zhong, H., Li, Y., Li, J. & Ji, L., 2022, In: Diabetologia. 65, 11, p. 1613-1626 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sex- and age-related trajectories of the adult human gut microbiota shared across populations of different ethnicities
Zhang, X., Zhong, H., Li, Y., Shi, Z., Ren, H., Zhang, Z., Zhou, X., Tang, S., Han, X., Lin, Y., Yang, F., Wang, D., Fang, C., Fu, Z., Wang, L., Zhu, S., Hou, Y., Xu, X., Yang, H., Wang, J. & 3 others, , 2021, In: Nature Aging. 1, 1, p. 87-100 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Model-data fusion to assess year-round CO2 fluxes for an arctic heath ecosystem in West Greenland (69°N)
Zhang, Wenxin, Jansson, P. E., Sigsgaard, Charlotte, McConnell, A., Jammet, M. M., Westergaard-Nielsen, Andreas, Lund, M., Friborg, Thomas, Michelsen, Anders & Elberling, Bo, 2019, In: Agricultural and Forest Meteorology. 272-273, p. 176-186 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
Zhang, W., Yu, Y., Hertwig, F., Thierry-Mieg, J., Zhang, W., Thierry-Mieg, D., Wang, J., Furlanello, C., Devanarayan, V., Cheng, J., Deng, Y., Hero, B., Hong, H., Jia, M., Li, L., Lin, S. M., Nikolsky, Y., Oberthuer, A., Qing, T., Su, Z. & 56 others, , 2015, In: Genome Biology (Online Edition). 16, 12 p., 133.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two Novel α-Thalassemia Mutations CD 39 -C [Thr > Pro] and CD 109 ACC > CCC [Thr > Pro] Identified in Two Chinese Families: A Case Report
Zhang, W., Han, X., Deng, J., Zhou, R., Du, X., Wu, C. & Li, M., 2023, In: Hemoglobin. 47, 4, 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recent decrease of the impact of tropical temperature on the carbon cycle linked to increased precipitation
Zhang, Wenmin, Schurgers, Guy, Peñuelas, J., Fensholt, Rasmus, Yang, H., Tang, Jing, Tong, Xiaowei, Ciais, P. & Brandt, Martin Stefan, 2023, In: Nature Communications. 14, 1, 9 p., 965.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of an archaeal virus replication initiator protein and first insights into virus assembly of spindle-shaped virus SMV1
Zhang, W., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 140 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity
Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42Research output: Contribution to journal › Journal article › Research › peer-review
- Published
PIRD: Pan Immune Repertoire Database
Zhang, W., Wang, L., Liu, K., Wei, X., Yang, K., Du, W., Wang, S., Guo, N., Ma, C., Luo, L., Wu, J., Lin, L., Yang, F., Gao, F., Wang, X., Li, T., Zhang, R., Saksena, N. K., Yang, H., Wang, J. & 4 others, , 2020, In: Bioinformatics. 36, 3, p. 897-903 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
IMonitor: a robust pipeline for TCR and BCR repertoire analysis
Zhang, W., Du, Y., Su, Z., Wang, C., Zeng, X., Zhang, R., Hong, X., Nie, C., Wu, J., Cao, H., Xu, X. & Liu, X., 2015, In: Genetics (Print). 201, 2, p. 459-472 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sea animal colonies enhance carbonyl sulfide emissions from coastal Antarctic tundra
Zhang, W., Zhu, R., Jiao, Yi, Rhew, R. C., Sun, B., Rinnan, Riikka & Zhou, Z., 2023, In: Communications Earth and Environment. 4, 1, 11 p., 326.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular cloning and antimicrobial activity of enterolysin A and helveticin J of bacteriolysins from metagenome of Chinese traditional fermented foods
Zhang, T., Pan, Y., Li, B., Ou, J., Zhang, J., Chen, Y., Peng, Xu & Chen, L., 2013, In: Food Control. 31, 2, p. 499-507 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenome-Genome wide association studies for analysis of complex diseases
Zhang, T., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 39 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization
Zhang, R., Liu, Q., Pan, S., Zhang, Y., Qin, Y., Du, X., Yuan, Z., Lu, Y., Song, Y., Zhang, M., Zhang, N., Ma, J., Zhang, Z., Jia, X., Wang, K., He, S., Liu, S., Ni, M., Liu, X., Xu, X. & 4 others, , 2023, In: Nature Communications. 14, 1, 15 p., 5630.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment
Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Iron oxide coated sand (IOS): Scale-up analysis and full-scale application for phosphorus removal from goat farm wastewater
Zhang, R., Wang, L., Lakho, F. H., Yang, X., Depuydt, V., Igodt, W., Le, H. Q., Rousseau, D. P. L. & Van Hulle, S., 2022, In: Separation and Purification Technology. 284, 10 p., 120213.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial transcriptome unveils a discontinuous inflammatory pattern in proficient mismatch repair colorectal adenocarcinoma
Zhang, R., Feng, Y., Ma, W., Guo, Y., Luo, M., Li, Y., Zang, Y., Dong, X., Lu, S., Guo, Q., Xu, Q., Chen, H., Li, Y., Liu, L., CHEN, Ao, Chen, G. & Xu, X., 2023, In: Fundamental Research. 3, 4, 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of Epiphytic Biofilm Activity on the Photosynthetic Activity, pH and Inorganic Carbon Microenvironment of Seagrass Leaves (Zostera marina L.)
Zhang, Q., Kühl, Michael & Brodersen, Kasper Elgetti, 2022, In: Frontiers in Marine Science. 9, 11 p., 835381.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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Recommendations for the Organisational Framework for Excellence at UCPH
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