Department of Biology

 

 
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  1. Published

    Evolutionary and biomedical insights from a marmoset diploid genome assembly

    Yang, C., Zhou, Y., Marcus, S., Formenti, G., Bergeron, L. A., Song, Z., Bi, X., Bergman, J., Rousselle, M. M. C., Zhou, C., Zhou, L., Deng, Y., Fang, M., Xie, D., Zhu, Y., Tan, S., Mountcastle, J., Haase, B., Balacco, J., Wood, J. & 13 others, Chow, W., Rhie, A., Pippel, M., Fabiszak, M. M., Koren, S., Fedrigo, O., Freiwald, W. A., Howe, K., Yang, H., Phillippy, A. M., Schierup, M. H., Jarvis, E. D. & KU, thw266, 2021, In: Nature. 594, p. 227-233

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A combined algorithm for automated drainage network extraction from digital elevation models

    Yan, Y., Tang, Jing & Pilesjo, P., 2018, In: Hydrological Processes. 32, 10, p. 1322-1333 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Diverse Aquatic Animal Matrices Play a Key Role in Survival and Potential Virulence of Non-O1/O139 Vibrio cholerae Isolates

    Yan, L., Jin, Y., Zhang, B., Xu, Y., Peng, Xu, Qin, S. & Chen, L., 2022, In: Frontiers in Microbiology. 13, 21 p., 896767.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques

    Yan, G., Zhang, G., Fang, X., Zhang, Y., Li, C., Ling, F., Cooper, D. N., Li, Q., Li, Y., van Gool, A. J., Du, H., Chen, J., Chen, R., Zhang, P., Huang, Z., Thompson, J. R., Meng, Y., Bai, Y., Wang, J., Zhuo, M. & 26 others, Wang, T., Huang, Y., Wei, L., Li, J., Wang, Z., Hu, H., Yang, P., Le, L., Stenson, P. D., Li, B., Liu, X., Ball, E. V., An, N., Huang, Q., Zhang, Y., Fan, W., Zhang, X., Li, Y., Wang, W., Katze, M. G., Su, B., Nielsen, Rasmus, Yang, H., Wang, J., Wang, X. & Wang, J., 2011, In: Nature Biotechnology. 29, 11, p. 1019-1023 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  5. Published

    Anatomical adaptations to gradients in soil water of wild species of Poaceae

    Yamauchi, T., Pedersen, Ole, Nakazono, M. & Tsutsumi, N., 2019, p. 25. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  6. Published

    Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress

    Yamauchi, T., Colmer, T. D., Pedersen, Ole & Nakazono, M., 2018, In: Plant Physiology. 176, 2, p. 1118-1130

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Key root traits of Poaceae for adaptation to soil water gradients

    Yamauchi, T., Pedersen, Ole, Nakazono, M. & Tsutsumi, N., 2021, In: New Phytologist. 229, 6, p. 3133-3140

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Molecular mechanisms that underlie the root cortex expansion in response to low oxygen

    Yamauchi, T., Sumi, K., Morishita, H., Pedersen, Ole, Inukai, Y. & Nakazono, M., 2022, p. 22.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  9. Published

    Neuroendocrine control of Drosophila larval light preference

    Yamanaka, N., Romero, N. M., Martin, F. A., Rewitz, Kim, Sun, M., O´Connor, M. B. & Léopold, P., 2013, In: Science. 341, 6150, p. 1113-1116 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Evolution of sex determination and sexually dimorphic larval sizes in parasitic barnacles

    Yamaguchi, S., Høeg, Jens Thorvald & Iwasa, Y., 2014, In: Journal of Theoretical Biology. 347, p. 7-16 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    ASPIRE: The Amundsen Sea Polynya International Research Expedition

    Yager, P. L., Sherrell, R. M., Stammerjohn, S. E., Alderkamp, A., Schofield, O., Abrahamsen, E. P., Arrigo, K. R., Bertilsson, S., Garay, D. L., Guerrero, R., Lowry, K. E., Moksnes, P., Ndungu, K., Post, A. F., Randall-Goodwin, E., Riemann, Lasse, Severmann, S., Thatje, S., Dijken, G. L. V. & Wilson, S., 2012, In: Oceanography. 25, 3, p. 40-53 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    A carbon budget for the Amundsen Sea Polynya, Antarctica: estimating net community production and export in a highly productive polar ecosystem

    Yager, P. L., Sherrell, R. M., Stammerjohn, S. E., Ducklow, H. W., Schofield, O. M. E., Ingall, E. D., Wilson, S. E., Lowry, K. E., Williams, C. M., Riemann, L., Bertilsson, S., Alderkamp, A-C., Dinasquet, J. V., Logares, R., Richert, I., Sipler, R. E., Melara, A. J., Mu, L., Newstead, R. G., Post, A. F. & 2 others, Swalethorp, R. & van Dijken, G. L., 2016, In: Elementa : Science of the Anthropocene. 4, 36 p., 000140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Life cycles of the rhizocephalan Boschmaella japonica Deichmann & Høeg, 1990 (Cirripedia: Chthamalophilidae) and its host barnacle Chthamalus challengeri Hoek, 1883 (Cirripedia: Chthamalidae)

    Yabuta, M., Høeg, Jens Thorvald, Yamato, S. & Yusa, Y., 2020, In: Journal of Crustacean Biology. 40, 6, p. 825-832 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

    Xue, Y., Prado-Martinez, J., Sudmant, P. H., Narasimhan, V., Ayub, Q., Szpak, M., Frandsen, P., Chen, Y., Yngvadottir, B., Cooper, D. N., de Manuel, M., Hernandez-Rodriguez, J., Lobon, I., Siegismund, H. R., Pagani, L., Quail, M. A., Hvilsom, C., Mudakikwa, A., Eichler, E. E., Cranfield, M. R. & 3 others, Marques-Bonet, T., Tyler-Smith, C. & Scally, A., 2015, In: Science (New York, N.Y.). 348, 6231, p. 242-245 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation

    Xue, J., Zhou, X., Zhang, C-X., Yu, L-L., Fan, H-W., Wang, Z., Xu, H-J., Xi, Y., Zhu, Z-R., Zhou, W-W., Pan, P-L., Li, B-L., Colbourne, J. K., Noda, H., Suetsugu, Y., Kobayashi, T., Zheng, Y., Liu, S., Zhang, R., Liu, Y. & 21 others, Luo, Y., Fang, D., Chen, Y., Zhan, D., Lv, X., Cai, Y., Wang, Z., Huang, H., Cheng, R., Zhang, X., Lou, Y., Yu, B., Zhuo, J., Ye, Y., Zhang, W., Shen, Z., Yang, H., Wang, J., Wang, J., Bao, Y. & Cheng, J., 2014, In: Genome Biology (Online Edition). 15, 12, 19 p., 521.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Genome-wide detection of selection and other evolutionary forces

    Xu, Z. & Zhou, R., 2015, Bacterial pangenomics: methods and protocols. Mengoni, A., Galardini, M. & Fondi, M. (eds.). Springer, p. 271-287 17 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  17. Published

    Bioinformatic approaches reveal metagenomic characterization of soil microbial community

    Xu, Z., Hansen, M. A., Hansen, Lars Hestbjerg, Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2014, In: P L o S One. 9, 4, 11 p., e93445.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Culture-dependent and -independent investigations of microbial diversity on urinary catheters

    Xu, Y., Moser, Claus Ernst, Abu Al-Soud, W., Sørensen, Søren Johannes, Høiby, Niels, Nielsen, P. H. & Thomsen, T. R., 2012, In: Journal of Clinical Microbiology. 50, 12, p. 3901-3908 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Embryo genome profiling by single-cell sequencing for preimplantation genetic diagnosis in a β-thalassemia family

    Xu, Y., Chen, S., Yin, X., Shen, X., Pan, X., Chen, F., Jiang, H., Liang, Y., Wang, W., Xu, X., Wang, J., Zhang, X., Zhou, C. & Wang, J., 2015, In: Clinical Chemistry. 61, 4, p. 617-626 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Four-decade dynamics of the water color in 61 large lakes on the Yangtze Plain and the impacts of reclaimed aquaculture zones

    Xu, Yang, Feng, L., Hou, X., Wang, J. & Tang, Jing, 2021, In: Science of the Total Environment. 781, 14 p., 146688.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Molecular evidence for origin, diversification and ancient gene duplication of plant subtilases (SBTs)

    Xu, Y., Wang, S., Li, L., Sahu, S. K., Petersen, Morten, Liu, X., Melkonian, M., Zhang, G. & Liu, Huan, 2019, In: Scientific Reports. 9, 10 p., 12485.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Haplotype-based approach for noninvasive prenatal tests of Duchenne muscular dystrophy using cell-free fetal DNA in maternal plasma

    Xu, Y., Li, X., Ge, H-J., Xiao, B., Zhang, Y-Y., Ying, X-M., Pan, X-Y., Wang, L., Xie, W-W., Ni, L., Chen, S-P., Jiang, W-T., Liu, P., Ye, H., Cao, Y., Zhang, J-M., Liu, Y., Yang, Z-J., Chen, Y-W., Chen, F. & 2 others, Jiang, H. & Ji, X., 2015, In: Genetics In Medicine. 17, 11, p. 889-896 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The Draft Genome of Hariotina reticulata (Sphaeropleales, Chlorophyta) Provides Insight into the Evolution of Scenedesmaceae

    Xu, Y., Li, L., Liang, H., Melkonian, B., Lorenz, M., Friedl, T., Petersen, Morten, Liu, Huan, Melkonian, M. & Wang, S., 2019, In: Protist. 170, 6, 6 p., 125684.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

    Xu, X., Liu, X., Ge, S., Jensen, J. D., Hu, F., Li, X., Dong, Y., Gutenkunst, R. N., Fang, L., Huang, L., Li, J., He, W., Zhang, G., Zheng, X., Zhang, F., Li, Y., Yu, C., Kristiansen, K., Zhang, X., Wang, J. & 5 others, Wright, M., McCouch, S., Nielsen, Rasmus, Wang, J. & Wang, W., 2012, In: Nature Biotechnology. 30, 1, p. 105-111 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor: Cell

    Xu, X., Hou, Y., Yin, X., Bao, L., Tang, A., Song, L., Li, F., Tsang, S., Wu, K., Wu, H., He, W., Zeng, L., Xing, M., Wu, R., Jiang, H., Liu, X., Cao, D., Guo, G., Hu, X., Gui, Y. & 19 others, Li, Z., Xie, W., Sun, X., Shi, M., Cai, Z., Wang, B., Zhong, M., Li, J., Lu, Z., Gu, N., Zhang, X., Goodman, L., Bolund, L., Wang, J., Yang, H., Kristiansen, Karsten, Dean, M., Li, Y. & Wang, J., 2012, In: Cell. 148, 5, p. 886-895 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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