- Published
Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data
Chen, Y., Jørgensen, M., Kolde, R., Zhao, X., Parker, B., Valen, E., Wen, J. & Sandelin, Albin Gustav, 2011, In: BMC Genomics. 12, 1, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Relation between NOD2 genotype and changes in innate signaling in Crohn's disease on mRNA and miRNA levels
Chen, Y., Salem, M., Boyd, M., Lange, Jette Bornholdt, Li, Yuan, Coskun, M., Seidelin, Jakob Benedict, Sandelin, Albin Gustav & Nielsen, Ole Haagen, 2017, In: npj Genomic Medicine. 2, 11 p., 3.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and evolution of avian endogenous foamy viruses
Chen, Y., Wei, X., KU, thw266, Holmes, E. C. & Cui, J., 2019, In: Virus Evolution. 5, 2, 6 p., vez049.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis
Chen, X., Tsvetkov, A. S., Shen, H., Isidoro, C., Ktistakis, N. T., Linkermann, A., Koopman, W. J. H., Simon, H., Galluzzi, L., Luo, S., Xu, D., Gu, W., Peulen, O., Cai, Q., Rubinsztein, D. C., Chi, J., Zhang, D. D., Li, C., Toyokuni, S., Liu, J. & 49 others, , 2024, (E-pub ahead of print) In: Autophagy. p. 1-34Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Viral integration drives multifocal HCC during the occult HBV infection
Chen, X-P., Long, X., Jia, W., Wu, H-J., Zhao, J., Liang, H-F., Laurence, A., Zhu, J., Dong, D., Chen, Y., Lin, L., Xia, Y-D., Li, W-Y., Li, G-B., Zhao, Z-K., Wu, K., Hou, Y., Yu, J-J., Xiao, W., Wang, G-P. & 6 others, , 2019, In: Journal of Experimental & Clinical Cancer Research. 38, 11 p., 261.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequencing of methylase-accessible regions in integral circular extrachromosomal DNA reveals differences in chromatin structure
Chen, W., Weng, Z., Xie, Z., Xie, Y., Zhang, C., Chen, Z., Ruan, F., Wang, J., Sun, Y., Fang, Y., Guo, M., Tong, Y., Li, Y. & Tang, C., 2021, In: Epigenetics & Chromatin. 14, 11 p., 40.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle
Chen, S., Zhang, G., Shao, C., Huang, Q., Liu, G., Zhang, P., Song, W., An, N., Chalopin, D., Volff, J-N., Hong, Y., Li, Q., Sha, Z., Zhou, H., Xie, M., Yu, Q., Liu, Y., Xiang, H., Wang, N., Wu, K. & 25 others, , 2014, In: Nature Genetics. 46, 3, p. 253-262 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Vegetation phenology and its ecohydrological implications from individual to global scales
Chen, S., Fu, Y. H., Hao, F., Li, X., Zhou, S., Liu, C. & Tang, Jing, 2022, In: Geography and Sustainability. 3, 4, p. 334-338 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Informing the SWAT model with remote sensing detected vegetation phenology for improved modeling of ecohydrological processes
Chen, S., Fu, Y. H., Wu, Z., Hao, F., Hao, Z., Guo, Y., Geng, X., Li, X., Zhang, X., Tang, Jing, Singh, V. P. & Zhang, X., 2023, In: Journal of Hydrology. 616, 13 p., 128817.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A new temperature-photoperiod coupled phenology module in LPJ-GUESS model v4.1: Optimizing estimation of terrestrial carbon and water processes
Chen, S., Fu, Y. H., Li, M., Jia, Z., Cui, Y. & Tang, Jing, 2024, In: Geoscientific Model Development. 17, 7, p. 2509-2523 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influences of Shifted Vegetation Phenology on Runoff Across a Hydroclimatic Gradient
Chen, S., Fu, Y. H., Geng, X., Hao, Z., Tang, Jing, Zhang, X., Xu, Z. & Hao, F., 2022, In: Frontiers in Plant Science. 12, 13 p., 802664.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A method for noninvasive detection of fetal large deletions/duplications by low coverage massively parallel sequencing
Chen, S., Lau, T. K., Zhang, C., Xu, C., Xu, Z., Hu, P., Xu, J., Huang, H., Pan, L., Jiang, F., Chen, F., Pan, X., Xie, W., Liu, P., Li, X., Zhang, L., Li, S., Li, Y., Xu, X., Wang, W. & 3 others, , 2013, In: Prenatal Diagnosis. 33, 6, p. 584-590 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Targeted next-generation sequencing identifies nine novel filaggrin gene variants in Chinese Han patients with ichthyosis vulgaris
Chen, S., Kong, X., Wei, X., Sun, Y., Yin, D., Zhang, Q., Du, L., Man, J., Mao, L., Li, H., Tu, Y. & Yang, Y., Nov 2017, In: British Journal of Dermatology. 177, 5, p. E202-E203 2 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Evidence for early domestic yak, taurine cattle, and their hybrids on the Tibetan Plateau
Chen, N., Zhang, Z., Hou, J., Chen, J., Gao, X., Tang, L., Wangdue, S., Zhang, X., Sinding, Mikkel Holger Strander, Liu, X., Han, J., Lü, H., Lei, C., Marshall, F. & Liu, X., 2023, In: Science Advances. 9, 50, 13 p., eadi6857.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global genetic diversity, introgression, and evolutionary adaptation of indicine cattle revealed by whole genome sequencing
Chen, N., Xia, X., Hanif, Q., Zhang, F., Dang, R., Huang, B., Lyu, Y., Luo, X., Zhang, H., Yan, H., Wang, S., Wang, F., Chen, J., Guan, X., Liu, Y., Li, S., Jin, L., Wang, P., Sun, L., Zhang, J. & 37 others, , 2023, In: Nature Communications. 14, 1, 13 p., 7803.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Central and peripheral nervous system progenitors derived from human pluripotent stem cells reveal a unique temporal and cell-type specific expression of PMCAs
Chen, M., Laursen, S. H., Habekost, M., Knudsen, C. H., Buchholdt, S. H., Huang, J., Xu, F., Liu, X., Bolund, L., Luo, Y., Nissen, P., Febbraro, F. & Denham, M., 2018, In: Frontiers in Cell and Developmental Biology. 6, p. 1-10 5.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Pyramiding of Three Key Root Traits Aid Breeding of Flood-Tolerant Rice
Chen, L., Zhu, T., Peralta Ogorek, Lucas León, Wang, Y., Sauter, M. & Pedersen, Ole, 2022, In: Plants. 11, 15, 10 p., 2033.Research output: Contribution to journal › Review › Research › peer-review
- Published
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
Chen, L., Qin, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., Su, W., Liu, G., Li, Q., Fu, W., Pan, X., Liu, C., Yang, J., Zhang, C., Yin, Y., Wang, Y. & 32 others, , 2019, In: Science. 364, 6446, p. 1152-Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mutational landscape of gastric adenocarcinoma in Chinese: implications for prognosis and therapy
Chen, K., Yang, D., Li, X., Sun, B., Song, F., Cao, W., Brat, D. J., Gao, Z., Li, H., Liang, H., Zhao, Y., Zheng, H., Li, M., Buckner, J., Patterson, S. D., Ye, X., Reinhard, C., Bhathena, A., Joshi, D., Mischel, P. S. & 12 others, , 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 4, p. 1107-1112 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Environmental and physiological controls on diurnal and seasonal patterns of biogenic volatile organic compound emissions from five dominant woody species under field conditions
Chen, J., Tang, Jing & Yu, X., 2020, In: Environmental Pollution. 259, 12 p., 113955.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
Chen, J., Huang, Q., Gao, D., Wang, J., Lang, Y., Liu, T., Li, B., Bai, Z., Goicoechea, J. L., Liang, C., Chen, C., Zhang, W., Sun, S., Liao, Y., Zhang, X., Yang, L., Song, C., Wang, M., Shi, J., Liu, G. & 21 others, , 2013, In: Nature Communications. 4, 9 p., 1595.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RPA coordinates DNA end resection and prevents formation of DNA hairpins
Chen, H., Lisby, Michael & Symington, L. S., 2013, In: Molecular Cell. 50, 4, p. 589-600 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Morphometric and molecular identification of individual barnacle cyprids from wild plankton: an approach to detecting fouling and invasive barnacle species
Chen, H., Høeg, Jens Thorvald & Chan, B. K. K., 2013, In: Biofouling. 29, 2, p. 133-45 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics
Chen, F., Su, L., Hu, S., Xue, J., Liu, H., Liu, G., Jiang, Y., Du, J., Qiao, Y., Fan, Y., Liu, Huan, Yang, Q., Lu, W., Shao, Z., Zhang, J., Zhang, L., Chen, F. & Cheng, Z. (., 2021, In: Horticulture Research. 8, 13 p., 141.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptome and network changes in climbers at extreme altitudes
Chen, F., Zhang, W., Liang, Y., Huang, J., Li, K., Green, C. D., Liu, J., Zhang, G., Zhou, B., Yi, X., Wang, W., Liu, H., Xu, X., Shen, F., Qu, N., Wang, Y., Gao, G., San, A., JiangBai, L., Sang, H. & 6 others, , 2012, In: P L o S One. 7, 2, p. e31645-e31645Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolation and whole genome sequencing of fetal cells from maternal blood towards the ultimate non-invasive prenatal testing
Chen, F., Liu, P., Gu, Y., Zhu, Z., Nanisetti, A., Lan, Z., Huang, Z., Liu, J. S., Kang, X., Deng, Y., Luo, L., Jiang, D., Qiu, Y., Pan, J., Xia, J., Xiong, K., Liu, C., Xie, L., Shi, Q., Li, J. & 7 others, , Dec 2017, In: Prenatal Diagnosis. 37, 13, p. 1311-1321 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single cell atlas for 11 non-model mammals, reptiles and birds
Chen, D., Sun, J., Zhu, J., Ding, X., Lan, T., Wang, X., Wu, W., Ou, Z., Zhu, L., Ding, P., Wang, H., Luo, L., Xiang, R., Wang, X., Qiu, J., Wang, S., Li, H., Chai, C., Liang, L., An, F. & 40 others, , 2021, In: Nature Communications. 12, 17 p., 7083.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of single cell sequencing data between two whole genome amplification methods on two sequencing platforms
Chen, D., Zhen, H., Qiu, Y., Liu, P., Zeng, P., Xia, J., Shi, Q., Xie, L., Zhu, Z., Gao, Y., Huang, G., Wang, J., Yang, H. & Chen, F., 1 Dec 2018, In: Scientific Reports. 8, 11 p., 4963.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cervicovaginal microbiome dynamics after taking oral probiotics
Chen, Chen, Hao, L., Zhang, Z., Tian, L., Zhang, X., Zhu, J., Jie, Zhuye, Tong, X., Xiao, L., Zhang, T., Jin, X., Xu, X., Yang, H., Wang, J., Kristiansen, Karsten & Jia, H., 2021, In: Journal of Genetics and Genomics. 48, 8, p. 716-726 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Relationship between the female cervico-vaginal microbiome and women’s health
Chen, Chen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 141 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The microbiota continuum along the female reproductive tract and its relation to uterine-related diseases
Chen, C., Song, X., Wei, W., Zhong, H., Dai, J., Lan, Z., Li, F., Yu, X., Feng, Q., Wang, Z., Xie, H., Chen, X., Zeng, C., Wen, B., Zeng, L., Du, H., Tang, H., Xu, C., Xia, Y., Xia, H. & 10 others, , 17 Oct 2017, In: Nature Communications. 8, 1, 11 p., 875.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays
Chen, A., Liao, S., Cheng, M., Ma, K., Wu, L., Lai, Y., Qiu, X., Yang, J., Xu, J., Hao, S., Wang, X., Lu, H., Chen, X., Liu, X., Huang, X., Li, Z., Hong, Y., Jiang, Y., Peng, J., Liu, S. & 49 others, , 2022, In: Cell. 185, 10, p. 1777-1792.e21Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex
Chen, A., Sun, Y., Lei, Y., Li, C., Liao, S., Meng, J., Bai, Y., Liu, Z., Liang, Z., Zhu, Z., Yuan, N., Yang, H., Wu, Z., Lin, F., Wang, K., Li, M., Zhang, S., Yang, M., Fei, T., Zhuang, Z. & 85 others, , 2023, In: Cell. 186, 17, p. 3726-3743.e24 43 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions
Chege, M., Sewalt, B., Lesilau, F., de Snoo, G., Patterson, B. D., Kariuki, L., Otiende, M., Omondi, P., de Iongh, H., Vrieling, K. & Bertola, Laura, 2024, In: Evolutionary Applications. 17, 3, 14 p., e13676.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya
Chege, M., Bertola, Laura, De Snoo, G. R., Ngene, S., Otieno, T., Amoke, I., van 't Zelfde, M., Dolrenry, S., Broekhuis, F., Tamis, W., De Iongh, H. H. & Elliot, N. B., 2024, In: Ecology and Evolution. 14, 2, 14 p., e10982.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel statistical method for classifying habitat generalists and specialists
Chazdon, R. L., Chao, A., Colwell, R. K., Lin, S., Norden, N., Letcher, S. G., Clark, D. B., Finegan, B. & Arroyo, J. P., 2011, In: Ecology. 92, 6, p. 1332-1343 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Srs2 promotes Mus81-Mms4-mediated resolution of recombination intermediates
Chavdarova, M., Marini, V., Sisakova, A., Sedlackova, H., Vigasova, D., Brill, S. J., Lisby, Michael & Krejci, L., 2015, In: Nucleic Acids Research. 43, 7, p. 3626-3642 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
(p)ppGpp-Dependent Regulation of the Nucleotide Hydrolase PpnN Confers Complement Resistance in Salmonella enterica Serovar Typhimurium
Chau, N. Y. E., Pérez-Morales, D., Elhenawy, W., Bustamante, V. H., ZHANG, YONG & Coombes, B. K., 2021, In: Infection and Immunity. 89, 2, 14 p., e00639-20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ontogenetic allometry underlies trophic diversity in sea turtles (Chelonioidea)
Chatterji, R. M., Hipsley, Christy Anna, Sherratt, E., Hutchinson, M. N. & Jones, M. E. H., 2022, In: Evolutionary Ecology. 36, 4, p. 511-540 30 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A proposal for a standardised protocol to barcode all land plants
Chase, M. W., Cowan, R. S., Hollingsworth, P. M., van den Berg, C., Madriñán, S., Petersen, G., Seberg, Ole, Jørgensen, Tina, Cameron, K. M., Carine, M., Pedersen, N., Hedderson, T. A. J., Conrad, F., Salazar, G. A., Richardson, J. E., Hollingsworth, M. L., Barraclough, T. G., Kelly, L. & Wilkinson, M., 2007, In: Taxon. 56, p. 295-299Research output: Contribution to journal › Journal article › Research › peer-review
- Published
AFISsys - an autonomous instrument for the preservation of brackish water samples for microbial metatranscriptome analysis
Charvet, S., Riemann, Lasse, Alneberg, J., Andersson, A. F., Borries, J. V., Fischer, U. & Labrenz, M., 2019, In: Water Research. 149, p. 351-361Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Integrity of a heterochromatic domain ensured by its boundary elements
Charlton, Sebastian Jespersen, Jørgensen, M. M. & Thon, Genevieve, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 35, p. 21504-21511 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Analysis of heterochromatin dynamics in Schizosaccharomyces pombe: With a special focus on the role of the replication factor Mrc1/Claspin in maintenance of epigenetic silencing
Charlton, Sebastian Jespersen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 138 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The 'relics of Joan of Arc': a forensic multidisciplinary analysis
Charlier, P., Poupon, J., Eb, A., De Mazancourt, P., Gilbert, M Thomas P, Huynh-Charlier, I., Loublier, Y., Verhille, A. M., Moulheirat, C., Patou-Mathis, M., Robbiola, L., Montagut, R., Masson, F., Etcheberry, A., Brun, L., Willerslev, Eske, de la Grandmaison, G. L. & Durigon, M., 2010, In: Forensic Science International. 194, 1-3, p. e9-15 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 SUMOylation functions as a molecular switch that determines a balance between the Rad5- and Rad59-dependent survivors
Charifi, F., Churikov, D., Eckert-Boulet, N., Minguet, C., Jourquin, F., Hardy, J., Lisby, Michael, Simon, M. N. & Géli, V., 2021, In: iScience. 24, 3, 26 p., 102231.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Iron chelation increases the tolerance of Escherichia coli to hyper-replication stress
Charbon, Godefroid, Klitgaard, R. N., Liboriussen, C. D., Thulstrup, Peter Waaben, Maffioli, S. I., Donadio, S. & Løbner-Olesen, Anders, 2018, In: Scientific Reports. 8, 1, 14 p., 10550.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Key role of Ser562/661 in Snf1-dependent regulation of Cat8p in Saccharomyces cerevisiae and Kluyveromyces lactis
Charbon, Godefroid, Breunig, K. D., Wattiez, R., Vandenhaute, J. & Noël-Georis, I., May 2004, In: Molecular and Cellular Biology. 24, 10, p. 4083-91 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Energy Starvation Induces a Cell Cycle Arrest in Escherichia coli by Triggering Degradation of the DnaA Initiator Protein
Charbon, Godefroid, Mendoza-Chamizo, B., Campion, C., Li, X., Jensen, P. R., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Frontiers in Molecular Biosciences. 8, 9 p., 629953.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli
Charbon, Godefroid, Campion, C., Chan, S. H. J., Bjørn, L., Weimann, A., da Silva, L. C. N., Jensen, P. R. & Løbner-Olesen, Anders, 27 Jan 2017, In: PLoS Genetics. 13, 1, 26 p., e1006590.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Counting Replication Origins to Measure Growth of Pathogens
Charbon, Godefroid, Haugan, M. S., Frimodt-Møller, N. & Løbner-Olesen, Anders, 2020, In: Antibiotics. 9, 5, 5 p., 239.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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Recommendations for the Organisational Framework for Excellence at UCPH
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Fremme af spontan vegetation efter gran
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A region of suppressed recombination misleads neoavian phylogenomics
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