Department of Biology

 

 
  1. Published

    Comparative genome analyses of Vibrio anguillarum strains reveal a link with pathogenicity traits

    Castillo Bermúdez, D. E., Alvise, P. D., Xu, R., Zhang, F., Middelboe, Mathias & Gram, L., 28 Feb 2017, In: mSystems. 2, 1, 14 p., e00001-17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    Genomic diversity of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum

    Castillo Bermúdez, D. E. & Middelboe, Mathias, 2016, In: F E M S Microbiology Letters. 363, 24, 6 p., fnw272.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Comparative genome analysis provides Insights into the pathogenicity of Flavobacterium psychrophilum

    Castillo Bermúdez, D. E., Christiansen, R. H., Dalsgaard, I., Madsen, L., Espejo, R. & Middelboe, Mathias, 2016, In: P L o S One. 11, 4, 18 p., e0152515.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: linking genomic mutations to changes in bacterial virulence factors

    Castillo Bermúdez, D. E., Cristiansen, R. H., Dalsgaard, I., Madsen, L. & Middelboe, Mathias, 2015, In: Applied and Environmental Microbiology. 81, 3, p. 1157-1167 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Ectopic expression of the calcium-binding protein parvalbumin in mouse liver endothelial cells

    Castillo, M. B., Berchtold, Martin Werner, Rülicke, T., Schwaller, B., Gotzos, V., Pinzani, M., Reichen, J. & Celio, M. R., 1997, In: Hepatology. 25, 5, p. 1154-9 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits

    Castillo, D., Donati, V. L., Jørgensen, J., Sundell, K., Dalsgaard, I., Madsen, L., Wiklund, T. & Middelboe, Mathias, 2021, In: Microorganisms. 9, 8, 15 p., 1658.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Genome Sequences of Shewanella baltica and Shewanella morhuae Strains Isolated from the Gastrointestinal Tract of Freshwater Fish

    Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 25, p. 1-2 e00541-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities

    Castillo, D., Kauffman, K., Hussain, F., Kalatzis, Panagiotis, Rørbo, N., Polz, M. F. & Middelboe, Mathias, 2018, In: Scientific Reports. 8, p. 1-9 9973.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Draft Genome Sequences of Six Vibrio diazotrophicus Strains Isolated from Deep Subsurface Sediments of the Baltic Sea

    Castillo, D., Vandieken, V., Engelen, B., Engelhardt, T. & Middelboe, Mathias, 2018, In: Genome Announcements. 6, 10, p. 1-2 e00081-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum

    Castillo, D., Rørbo, N., Jørgensen, J., Lange, J., Tan, D., Kalatzis, Panagiotis, Svenningsen, Sine Lo & Middelboe, Mathias, 2019, In: FEMS Microbiology Ecology. 95, 3, fiz004.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum

    Castillo, D., Andersen, N., Kalatzis, Panagiotis & Middelboe, Mathias, 2019, In: Viruses. 11, 11, 15 p., 983.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    In Vitro Evolution of Specific Phages Infecting the Fish Pathogen Flavobacterium psychrophilum

    Castillo, D., Højsting, A. R., Roosvall, A., Smyrlis, G., Jørgensen, J. & Middelboe, Mathias, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 1, p. 28-37 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility

    Castillo, D., Jørgensen, J., Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 2021, In: Environmental Microbiology. 23, 8, p. 4185-4199 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Complete Genome Sequence of Shewanella sp. WE21, a Rare Isolate with Multiple Novel Large Genomic Islands

    Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 16, p. 1-2 e00277-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids

    Castillo, D., Higuera, G., Villa, M., Middelboe, Mathias, Dalsgaard, I., Madsen, L. & Espejo, R. T., 2012, In: Journal of Fish Diseases Online. 35, 3, p. 193-201 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    CTLs' repertoire shaping in the thymus: a Monte Carlo simulation

    Castiglione, F., Santoni, D. & Rapin, N. P. J., 2011, In: Autoimmunity. 44, 4, p. 261-270 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Pseudo-nitzschia pungens (Bacillariophyceae): A cosmopolitan species?

    Casteleyn, G., Chepurnov, V., Leliaert, F., Mann, D., Bates, S., Lundholm, Nina, Rhodes, L., Sabbe, K. & Vyverman, W., 2007, In: Harmful Algae. p. 241–257

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    PICH deficiency limits the progression of MYC-induced B-cell lymphoma

    Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Short-term changes in consumption and oviposition rates of Neoseiulus californicus strains (Acari: Phytoseiidae) after a diet shift

    Castagnoli, M., Simoni, S. & Nachman, Gøsta Støger, 2001, In: Experimental and Applied Acarology. 25, p. 969-983

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Prospects for population expansion of the exotic aoudad (Ammotragus lervia; Bovidae) in the Iberian Peninsula: clues from habitat suitability modelling

    Cassinello, J., Acevedo, P. & Hortal, J., 2006, In: Diversity and Distributions-a Journal of Biological Invasions and Biodiversity. 12, 6, p. 666-678

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Phosphorylation sites of Arabidopsis MAP kinase substrate 1 (MKS1).

    Caspersen, M. B., Qiu, J., Zhang, X., Andreasson, E., Naested, H., Mundy, J. & Svensson, B., 2007, In: BBA General Subjects. 1774, 9, p. 1156-63 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Restricted O2 consumption in pea roots induced by hexanoic acid is linked to depletion of Krebs cycle substrates

    Casolo, V., Zancani, M., Pellegrini, Elisa, Filippi, A., Gargiulo, S., Konnerup, D., Morandini, P. & Pedersen, Ole, 2023, In: Physiologia Plantarum. 175, 5, 13 p., e14024.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    A comparison of the mechanisms of electrolyte secretion in pancreas and salivary glands

    Case, R. M., Hunter, M., Novak, Ivana & Young, J. A., 1 Jan 1983, In: Scandinavian Journal of Gastroenterology, Supplement. 18, 87, p. 57-67 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    The role of buffer anions and protons in secretion by the rabbit mandibular salivary gland.

    Case, R. M., Conigrave, A. D., Favaloro, E. J., Novak, Ivana, Thompson, C. H. & Young, J. A., 1982, In: Journal of Physiology. 322, p. 273-86 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Electrolyte and protein secretion by the perfused rabbit mandibular gland stimulated with acetylcholine or catecholamines.

    Case, R. M., Conigrave, A. D., Novak, Ivana & Young, J. A., 1980, In: Journal of Physiology. 300, p. 467-87 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    The anionic basis of fluid secretion by the rabbit mandibular salivary gland.

    Case, R. M., Hunter, M., Novak, Ivana & Young, J. A., 1984, In: Journal of Physiology. 349, p. 619-30 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Secretion of saliva by the rabbit mandibular gland in vitro: the role of anions.

    Case, R. M., Conigrave, A. D., Hunter, M., Novak, Ivana, Thompson, C. H. & Young, J. A., 1981, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 296, 1080, p. 179-92 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    RhoA exerts a permissive effect on volume-regulated anion channels in vascular endothelial cells.

    Carton, I., Trouet, D., Hermans, D., Barth, H., Aktories, K., Droogmans, G., Jorgensen, N. K., Hoffmann, E. K., Nilius, B. & Eggermont, J., 2002, In: American Journal of Physiology: Cell Physiology. 283, 1, p. C115-C125

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Is organic farming a mitigation option? - A study on N2O emission from winter wheat

    Carter S., M., Albert, K. & Ambus, Per Lennart, 2009, In: Institute of Physics Conference Series.

    Research output: Contribution to journalConference abstract in journalResearch

  30. Published

    Effects of elevated atmospheric CO2, prolonged summer drought and temperature increase on N2O and CH4 fluxes in a temperate heathland

    Carter, M. S., Ambus, Per Lennart, Albert, K. R., Larsen, Klaus Steenberg, Andersson, M., Priemé, Anders, van der Linden, L. & Beier, Claus, 2011, In: Soil Biology & Biochemistry. 43, 8, p. 1660-1670 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    N2O and CH4 fluxes in a temperate heathland under future climatic conditions

    Carter, M. S., Ambus, P., Albert, K. R., Larsen, K. S., Andersson, M., Mikkelsen, T. N., Beier, C., Andresen, L. C. & Kongstad, J., 2009.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  32. Published

    Kleptoplast photosynthesis is nutritionally relevant in the sea slug Elysia viridis

    Cartaxana, P., Trampe, Erik, Kühl, Michael & Cruz, S., 2017, In: Scientific Reports. 7, 10 p., 7714.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Photosynthesis from stolen chloroplasts can support sea slug reproductive fitness

    Cartaxana, P., Rey, F., LeKieffre, C., Lopes, D., Hubas, C., Spangenberg, J. E., Escrig, S., Jesus, B., Calado, G., Domingues, R., Kühl, Michael, Calado, R., Meibom, A. & Cruz, S., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1959, 9 p., 20211779.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Differential postprandial lipoprotein responses in type 2 diabetic men with and without clinical evidence of a former myocardial infarction.

    Carstensen, M., Thomsen, C., Gotzsche, O., Holst, Jens Juul, Schrezenmeir, J. & Hermansen, K., 2005, In: The review of diabetic studies : RDS. 1, 4, p. 175-84 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Multivariate Hawkes process models of the occurrence of regulatory elements

    Carstensen, L., Sandelin, Albin Gustav, Winther, Ole & Hansen, Niels Richard, 2010, In: BMC Bioinformatics. 11, p. 456

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Isolation of <Glu-Asn-Phe-His-Leu-Arg-Pro-NH2 (Antho-RPamide II), a novel, biologically active neuropeptide from sea anemones

    Carstensen, K., McFarlane, I. D., Rinehart, K. L., Hudman, D., Sun, F. & Grimmelikhuijzen, Cornelis (Cok), 1993, In: Peptides. 14, 2, p. 131-135 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Isolation of Leu-Pro-Pro-Gly-Pro-Leu-Pro-Arg-Pro-NH2 (Antho-RPamide), an N-terminally protected, biologically active neuropeptide from sea anemones

    Carstensen, K., Rinehart, K. L., McFarlane, I. D. & Grimmelikhuijzen, Cornelis (Cok), 1992, In: Peptides. 13, 5, p. 851-857 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Introducing the biogeographic species pool

    Carstensen, D. W., Lessard, J., Holt, B. G., Borregaard, Michael Krabbe & Rahbek, Carsten, 2013, In: Ecography. 36, 12, p. 1310-1318 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Biogeographical modules and island roles: a comparison of Wallacea and the West Indies

    Carstensen, D. W., Dalsgaard, Bo, Svenning, J., Rahbek, Carsten, Fjeldså, Jon, Sutherland, W. J. & Olesen, J. M., 2012, In: Journal of Biogeography. 39, 4, p. 739-749 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    The functional biogeography of species: biogeographical species roles of birds in Wallacea and the West Indies

    Carstensen, D. W., Dalsgaard, Bo, Svenning, J., Rahbek, Carsten, Fjeldså, Jon, Sutherland, W. J. & Olesen, J. M., Oct 2013, In: Ecography. 36, 10, p. 1097–1105 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Applying evolutionary biology to address global challenges

    Carroll, S. P., Jørgensen, P. S., Kinnison, M. T., Bergstrom, C. T., Denison, R. F., Gluckman, P., Smith, T. B., Strauss, S. Y. & Tabashnik, B. E., 2014, In: Science. 346, 6207, 11 p.

    Research output: Contribution to journalReviewResearchpeer-review

  42. Published

    New stalked and sessile cirripedes from the Eocene Mo Clay, northwest Jutland (Denmark)

    Carriol, R., Bonde, N. C., Jakobsen, S. L. & Høeg, Jens Thorvald, 2016, In: Museum National d'Histoire Naturelle. Geodiversitas. 38, 1, p. 21-32 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Evidence for L1-associated DNA rearrangements and negligible L1 retrotransposition in glioblastoma multiforme

    Carreira, P. E., Ewing, A. D., Li, G., Schauer, S. N., Upton, K. R., Fagg, A. C., Morell, S., Kindlova, M., Gerdes, P., Richardson, S. R., Li, B., Gerhardt, D. J., Wang, J., Brennan, P. M. & Faulkner, G. J., 2016, In: Mobile D N A. 7, 14 p., 21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Limnology and Oceanography: Methods. 13, 4, p. 169-177 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment

    Carreira, C., Larsen, M., Glud, R. N., Brussaard, C. P. D. & Middelboe, Mathias, 2013, In: Aquatic Microbial Ecology. 69, 3, p. 183-192 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats

    Carreira, C., Piel, T., Staal, M. J., Stuut, J. W., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: SpringerPlus. 4, 11 p., 239.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Fungi and viruses as important players in microbial mats

    Carreira, C., Lønborg, C., Kühl, Michael, Lillebø, A. I., Sandaa, R., Villanueva, L. & Cruz, S., 2020, In: FEMS Microbiology Ecology. 96, 11, 13 p., fiaa187.

    Research output: Contribution to journalReviewResearchpeer-review

  48. Published

    Disruption of photoautotrophic intertidal mats by filamentous fungi

    Carreira, C., Staal, M. J., Falkoski, D., de Vries, R. P., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Environmental Microbiology. 17, 8, p. 2910-2921 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Counting viruses and bacteria in photosynthetic microbial mats

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Applied and Environmental Microbiology. 81, 6, p. 2149-2155 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Microtermolides A and B from termite-associated Streptomyces sp. and structural revision of vinylamycin

    Carr, G., Poulsen, Michael, Klassen, J. L., Hou, Y., Wyche, T. P., Bugni, T. S., Currie, C. R. & Clardy, J., 2012, In: Organic Letters. 14, 11, p. 2822–2825 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review