Department of Biology

 

 
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  1. 2022
  2. Published

    Comparative Genomic and Metabolomic Analysis of Termitomyces Species Provides Insights into the Terpenome of the Fungal Cultivar and the Characteristic Odor of the Fungus Garden of Macrotermes natalensis Termites

    Kreuzenbeck, N. B., Seibel, E., Schwitalla, J. W., Fricke, J., Conlon, B. H., Schmidt, Suzanne, Hammerbacher, A., Köllner, T. G., Poulsen, Michael, Hoffmeister, D., Beemelmanns, C. & Pupo, M. T. (ed.), 2022, In: mSystems. 7, 1, 16 p., e01214-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola

    You, J., Lougheed, S. C., Zhao, Y., KU, thw266, Liu, W., Lu, F., Wang, Y., Zhang, W., Yang, J., Qiong, L. & Song, Z., 2022, In: Annals of Botany. 129, 2, p. 185-200 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Comparative proteomics and secretomics revealed virulence, and coresistance-related factors in non O1/O139 Vibrio cholerae recovered from 16 species of consumable aquatic animals

    Shan, X., Fu, J., Li, X., Peng, Xu & Chen, L., 2022, In: Journal of Proteomics. 251, 15 p., 104408.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Computational identification of signals predictive for nuclear RNA exosome degradation pathway targeting

    Wu, M., Schmid, M., Jensen, T. H. & Sandelin, Albin Gustav, 2022, In: NAR Genomics and Bioinformatics. 4, 3, 18 p., lqac071.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Conflicts between large carnivores and local pastoralists around Niokolo Koba National Park, Senegal

    Gueye, M., Van Cauteren, D., Mengual, L., Pellaton, R., Leirs, H., Bertola, Laura & de Iongh, H., 2022, In: European Journal of Wildlife Research. 68, 1, 11 p., 9.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Conformational ensembles of intrinsically disordered proteins and flexible multidomain proteins

    Thomasen, Emil & Lindorff-Larsen, Kresten, 2022, In: Biochemical Society Transactions. 50, 1, p. 541-554 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  8. Published

    Conformational heterogeneity of UCAAUC RNA oligonucleotide from molecular dynamics simulations, SAXS, and NMR experiments

    Bergonzo, C., Grishaev, A. & Bottaro, S., 2022, In: RNA. 28, 7, p. 937-946 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

    Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 p.

    Research output: Working paper › Preprint

  10. Published

    Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird

    Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Conserved conformational dynamics determine enzyme activity

    Torgeson, K. R., Clarkson, M. W., Granata, D., Lindorff-Larsen, Kresten, Page, R. & Peti, W., 2022, In: Science Advances. 8, 31, 10 p., eabo5546.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Conserved degronome features governing quality control associated proteolysis

    Mashahreh, B., Armony, S., Johansson, Kristoffer Enøe, Chappleboim, A., Friedman, N., Gardner, R. G., Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten & Ravid, T., 2022, In: Nature Communications. 13, 1, 13 p., 7588.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Conserved signalling components coordinate epidermal patterning and cuticle deposition in barley

    Liu, L., Jose, S. B., Campoli, C., Bayer, M. M., Sánchez-Diaz, M. A., McAllister, T., Zhou, Y., Eskan, M., Milne, L., Schreiber, M., Batstone, T., Bull, I. D., Ramsay, L., von Wettstein, Penny, Waugh, R., Hetherington, A. M. & McKim, S. M., 2022, In: Nature Communications. 13, 18 p., 6050.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Context dependency of nucleotide probabilities and variants in human DNA

    Liang, Yuhu, Grønbæk, Christian, Fariselli, P. & Krogh, Anders, 2022, In: BMC Genomics. 23, 1, 15 p., 87.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Context dependent prediction in DNA sequence using neural networks

    Grønbæk, Christian, Liang, Yuhu, Elliott, Desmond & Krogh, Anders, 2022, In: PeerJ. 10, 22 p., e13666.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Contrasting Roles of DOP as a Source of Phosphorus and Energy for Marine Diazotrophs: [Correction]

    Filella, A., Riemann, Lasse, Van Wambeke, F., Pulido-Villena, E., Vogts, A., Bonnet, S., Grosso, O., Diaz, J. M., Duhamel, S. & Benavides, M., 2022, In: Frontiers in Marine Science. 9, 10 p., 923765.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Contrasting phenology responses to climate warming across the northern extra-tropics

    Geng, X., Zhang, Y., Fu, Y. H., Hao, F., Janssens, I. A., Peñuelas, J., Piao, S., Tang, Jing, Wu, Z., Zhang, J., Zhang, X. & Stenseth, N. C., 2022, In: Fundamental Research. 2, 5, p. 708-715 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale

    YANG, Meng, Yang, Y., Xie, C., Ni, M., Liu, J., Yang, H., Mu, F. & Wang, J., 2022, In: Nature Machine Intelligence. 4, 8, p. 696-709 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Convergent genomic signals of tail length reduction in multiple macaque lineages

    DENG, Y., 2022, Section for Ecology and Evolution, Department of Biology, University of Copenhagen. 164 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Could Experimental Inflammation Provide Better Understanding of Migraines?

    Reducha, Philip Victor, Edvinsson, L. & Haanes, Kristian Agmund, 2022, In: Cells. 11, 15, 17 p., 2444.

    Research output: Contribution to journal › Review › Research › peer-review

  21. Published

    Coupling plant litter quantity to a novel metric for litter quality explains C storage changes in a thawing permafrost peatland

    Hough, M., Mccabe, S., Vining, S. R., Pickering Pedersen, E., Wilson, R. M., Lawrence, R., Chang, KY., Bohrer, G., Riley, W. J., Crill, P. M., Varner, R. K., Blazewicz, S. J., Dorrepaal, E., Tfaily, M. M., Saleska, S. R., Rich, V. I., Frolking, S., Hodgkins, S. B., Mccalley, C. K., Cooper, W. T. & 6 others, Chanton, J. P., Sullivan, M. B., Tyson, G. W., Brodie, E. L., Woodcroft, B. B. & Dominguez, S., 2022, In: Global Change Biology. 28, 3, p. 950-968

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, Lars Hestbjerg, Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, Jakob Nybo, Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, Simon, Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, Søren Johannes, Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 2022, In: Nature Methods. 19, 4, p. 429-440

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Cross-species discrimination of vocal expression of emotional valence by Equidae and Suidae

    Maigrot, A., Hillmann, E. & Briefer, Elodie, 2022, In: BMC Biology. 20, 14 p., 106.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity

    Neumann, C., Rosenbæk, L. L., Flygaard, R. K., Habeck, M., Karlsen, J. L., Wang, Y., Lindorff-Larsen, Kresten, Gad, H. H., Hartmann, R., Lyons, J. A., Fenton, R. A. & Nissen, P., 2022, In: EMBO Journal. 41, 23, 15 p., e110169.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Current challenges in understanding the role of enhancers in disease

    Zaugg, J. B., Sahlén, P., Andersson, Robin, Alberich-Jorda, M., de Laat, W., Deplancke, B., Ferrer, J., Mandrup, S., Natoli, G., Plewczynski, D., Rada-Iglesias, A. & Spicuglia, S., 2022, In: Nature Structural and Molecular Biology. 29, 12, p. 1148-1158 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    DNA Motifs and an Accessory CRISPR Factor Determine Cas1 Binding and Integration Activity in Sulfolobus islandicus

    Liu, T., Xu, Y., Wang, X., Ye, Q., Liu, Z., Zhang, Z., Liu, J., Yang, Y., Peng, Xu & Peng, N., 2022, In: International Journal of Molecular Sciences . 23, 17, 15 p., 10178.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Danmarks Biodiversitet: før, nu og I morgen

    Sand-Jensen, Kaj & Schou, J. C., 2022, 1 ed. København: Gad. 240 p.

    Research output: Book/Report › Book › Communication

  28. Published

    De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions

    Li, M., Sun, C., Xu, N., Bian, P., Tian, X., Wang, X., Wang, Y., Jia, X., Heller, R., Wang, M., Wang, F., Dai, X., Luo, R., Guo, Y., Wang, X., Yang, P., Hu, D., Liu, Z., Fu, W., Zhang, S. & 10 others, Li, X., Wen, C., Lan, F., Siddiki, A. Z., Suwannapoom, C., Zhao, X., Nie, Q., Hu, X., Jiang, Y. & Yang, N., 2022, In: Molecular Biology and Evolution. 39, 4, 16 p., msac066.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    De novo transcriptome sequencing of the northern fowl mite, Ornithonyssus sylviarum, shed light on parasitiform poultry mites evolution and its chemoreceptor repertoires

    Bhowmick, B., Chen, H., Lozano-Fernandez, J., Vizueta Moraga, Joel, Ignell, R. & Han, Q., 2022, In: Parasitology Research. 121, 2, p. 521-535 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils

    Topalović, O., Santos, S. S., Heuer, H., Nesme, Joseph, Kanfra, X., Hallmann, J., Sørensen, Søren Johannes & Vestergård, M., 2022, In: Applied Soil Ecology. 172, 9 p., 104344.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Deciphering horizontal transfer of plasmids and β-lactamase protection in microbial communities

    Olesen, Asmus Kalckar, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 180 p.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Deciphering the Alphabet of Disorder-Glu and Asp Act Differently on Local but Not Global Properties

    Roesgaard, M. A., Lundsgaard, J. E., Newcombe, Estella Anne, Jacobsen, Nina Louise, Pesce, Francesco, Tranchant, E. E., Lindemose, Søren, Prestel, Andreas, Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten & Kragelund, Birthe Brandt, 2022, In: Biomolecules. 12, 10, 19 p., 1426.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    DeepLoc 2.0: multi-label subcellular localization prediction using protein language models

    Thumuluri, V., Almagro Armenteros, J. J., Johansen, A. R., Nielsen, H. & Winther, Ole, 2022, In: Nucleic Acids Research. 50, W1, p. W228-W234

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Deoxygenation lowers the thermal threshold of coral bleaching: [Inkl. Correction]

    Alderdice, R., Perna, G., Cárdenas, A., Hume, B. C. C., Wolf, M., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Scientific Reports. 12, 14 p., 18273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Development and Optimization of a Silica Column-Based Extraction Protocol for Ancient DNA

    Dehasque, M., Chrzanová Pecnerová, Patrícia, Kempe Lagerholm, V., Ersmark, E., Danilov, G. K., Mortensen, P., Vartanyan, S. & Dalén, L., 2022, In: Genes. 13, 4, 16 p., 687.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Diet and food selection by fish larvae in turbid and clear water shallow temperate lakes

    Trochine, C., Risholt, C., Schou, M. O., Lauridsen, T. L., Jacobsen, L., Skov, C., Søndergaard, M., Berg, S., Christoffersen, Kirsten Seestern & Jeppesen, E., 2022, In: Science of the Total Environment. 804, 12 p., 150050.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Dietary Selenomethionine Reduce Mercury Tissue Levels and Modulate Methylmercury Induced Proteomic and Transcriptomic Alterations in Hippocampi of Adolescent BALB/c Mice

    Mellingen, R. M., Myrmel, L. S., Rasinger, J. D., Lie, K. K., Bernhard, A., Madsen, L. & Nostbakken, O. J., 2022, In: International Journal of Molecular Sciences. 23, 20, 19 p., 12242.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Differential expression of the three independent CaM genes coding for an identical protein: Potential relevance of distinct mRNA stability by different codon usage

    Munk, M., Villalobo, E., Villalobo, A. & Berchtold, Martin Werner, 2022, In: Cell Calcium. 107, 20 p., 102656.

    Research output: Contribution to journal › Review › Research › peer-review

  39. Published

    Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome

    Neves, R. C., Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 267, 7 p., 111169.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Direct and indirect effects of warming on moss abundance and associated nitrogen fixation in subarctic ecosystems

    Permin, Aya Tora Foged, Michelsen, Anders & Rousk, Kathrin, 2022, In: Plant and Soil. 471, 1-2, p. 343-358 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Disease-linked mutations cause exposure of a protein quality control degron

    Kampmeyer, Caroline, Larsen-Ledet, Sven, Wagnkilde, M. R., Michelsen, M., Iversen, Henriette Kring Mangor, Nielsen, S. V., Lindemose, Søren, Caregnato, A., Ravid, T., Stein, Amelie, Teilum, Kaare, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2022, In: Structure. 30, 9, p. 1245-1253.e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Disentangling compartment functions in sessile marine invertebrates

    Hughes, D. J., Raina, J., Nielsen, D. A., Suggett, D. J. & Kühl, Michael, 2022, In: Trends in Ecology & Evolution. 37, 9, p. 740-748 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Disparate Inventories of Hypoxia Gene Sets Across Corals Align With Inferred Environmental Resilience

    Alderdice, R., Hume, B. C. C., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Frontiers in Marine Science. 9, 14 p., 834332.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Dissection of Functional Domains of Orc1-2, the Archaeal Global DNA Damage-Responsive Regulator

    Liu, X., Sun, M., Xu, R., Shen, Y., Huang, Q., Feng, X. & She, Q., 2022, In: International Journal of Molecular Sciences. 23, 23, 16 p., 14609.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Distance decay 2.0 – A global synthesis of taxonomic and functional turnover in ecological communities

    Graco-Roza, C., Aarnio, S., Abrego, N., Acosta, A. T. R., Alahuhta, J., Altman, J., Angiolini, C., Aroviita, J., Attorre, F., Baastrup-Spohr, L., Barrera-Alba, J. J., Belmaker, J., Biurrun, I., Bonari, G., Bruelheide, H., Burrascano, S., Carboni, M., Cardoso, P., Carvalho, J. C., Castaldelli, G. & 72 others, Christensen, M., Correa, G., Dembicz, I., Dengler, J., Dolezal, J., Domingos, P., Erös, T., Ferreira, C. E. L., Filibeck, G., Floeter, S. R., Friedlander, A. M., Gammal, J., Gavioli, A., Gossner, M. M., Granot, I., Guarino, R., Gustafsson, C., Hayden, B., He, S., Heilmann-Clausen, Jacob, Heino, J., Hunter, J. T., Huszar, V. L. M., Janišová, M., Jyrkänkallio-Mikkola, J., Kahilainen, K. K., Kemppinen, J., Kozub, Ł., Kruk, C., Kulbiki, M., Kuzemko, A., Christiaan le Roux, P., Lehikoinen, A., Teixeira de Lima, D., Lopez-Urrutia, A., Lukács, B. A., Luoto, M., Mammola, S., Marinho, M. M., Menezes, L. S., Milardi, M., Miranda, M., Moser, G. A. O., Mueller, J., Niittynen, P., Norkko, A., Nowak, A., Ometto, J. P., Ovaskainen, O., Overbeck, G. E., Pacheco, F. S., Pajunen, V., Palpurina, S., Picazo, F., Campos, J. A., Rodil, I. F., Sabatini, F. M., Salingré, S., De Sanctis, M., Segura, A. M., da Silva, L. H. S., Stevanovic, Z. D., Swacha, G., Teittinen, A., Tolonen, K. T., Tsiripidis, I., Virta, L., Wang, B., Wang, J., Weisser, W., Xu, Y. & Soininen, J., 2022, In: Global Ecology and Biogeography. 31, 7, p. 1399-1421 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Distinct Functional Metagenomic Markers Predict the Responsiveness to Anti-PD-1 Therapy in Chinese Non-Small Cell Lung Cancer Patients

    Fang, C., Fang, W., Xu, L., Gao, F., Hou, Y., Zou, H., Ma, Y., Moll, J. M., Yang, Y., Wang, D., Huang, Y., Ren, H., Zhao, H., Qin, S., Zhong, H., Li, J., Liu, S., Yang, H., Wang, J., Brix, S. & 2 others, Kristiansen, Karsten & Zhang, L., 2022, In: Frontiers in Oncology. 12, 13 p., 837525.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Distribution of protoporphyrin IX in erythrocytes in a case of acquired erythropoietic protoporphyria

    Heerfordt, I. M., Fontenete, S., Lerche, Catharina Margrethe & Wulf, H. C., 2022, In: Photodiagnosis and Photodynamic Therapy. 37, 3 p., 102629.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Diverse Aquatic Animal Matrices Play a Key Role in Survival and Potential Virulence of Non-O1/O139 Vibrio cholerae Isolates

    Yan, L., Jin, Y., Zhang, B., Xu, Y., Peng, Xu, Qin, S. & Chen, L., 2022, In: Frontiers in Microbiology. 13, 21 p., 896767.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Does childhood exposure to biodiverse greenspace reduce the risk of developing asthma?

    Winnicki, M. H., Dunn, R. R., Winther-Jensen, M., Jess, T., Allin, K. H. & Bruun, Hans Henrik, 2022, In: Science of the Total Environment. 850, 11 p., 157853.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Domains and Major Transitions of Social Evolution

    Boomsma, Jacobus J., 2022, Oxford University Press. 296 p.

    Research output: Book/Report › Book › Research › peer-review

  51. Published

    Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs

    Hui, Y., Vestergaard, G., Deng, Ling, Kot, Witold, Thymann, Thomas, Brunse, Anders & Nielsen, Dennis Sandris, 2022, In: npj Biofilms and Microbiomes. 8, 1, 12 p., 48.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Double Mutant of Chymotrypsin Inhibitor 2 Stabilized through Increased Conformational Entropy

    Gavrilov, Y., Kümmerer, Felix, Orioli, S., Prestel, Andreas, Lindorff-Larsen, Kresten & Teilum, Kaare, 2022, In: Biochemistry. 61, 3, p. 160-170 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Draft genome assemblies of four manakins

    Li, X., Gao, R., Chen, G., Price, A. L., Øksnebjerg, Daniel Bilyeli, Hosner, Peter Andrew, Zhou, Y., KU, thw266 & Feng, S., 2022, In: Scientific Data. 9, 11 p., 564.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Dual action of the cannabinoid receptor 1 ligand arachidonyl-2′-chloroethylamide on calcitonin gene-related peptide release

    Christiansen, I. M., Edvinsson, J. C. A., Reducha, Philip Victor, Edvinsson, L. & Haanes, Kristian Agmund, 2022, In: Journal of Headache and Pain. 23, 11 p., 30.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Ductal keratin 15+ luminal progenitors in normal breast exhibit a basal-like breast cancer transcriptomic signature

    Kohler, Katharina Theresa, Goldhammer, N., Demharter, S., Pfisterer, U., Khodosevich, Konstantin, Rønnov-Jessen, Lone, Petersen, Ole William, Villadsen, René & Kim, Jiyoung, 2022, In: npj Breast Cancer. 8, 1, 12 p., 81.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Ecological adaptation and birdsong: how body and bill sizes affect passerine sound frequencies

    Friis, J. I., Sabino, J., Santos, P., Dabelsteen, Torben & Cardoso, G. C., 2022, In: Behavioral Ecology. 33, 4, p. 798-806 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Ecological correlates of riverine diatom and macroinvertebrate alpha and beta diversity across Arctic Fennoscandia

    Brittain, J. E., Heino, J., Friberg, N., Aroviita, J., Kahlert, M., Karjalainen, S. M., Keck, F., Lento, J., Liljaniemi, P., Mykrä, H., Schneider, S. C. & Ylikörkkö, J., 2022, In: Freshwater Biology. 67, 1, p. 49-63 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Ecological factors driving the feather mite associations in tropical avian hosts

    Bodawatta, Kasun Harshana, Shriner, I., Pigott, S., Koane, B., Vinagre-Izquierdo, C., Rios, R. S., Jønsson, Knud Andreas & Tori, W. P., 2022, In: Journal of Avian Biology. 2022, 6, 13 p., e02951.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Ecosystem Metabolism and Gradients of Temperature, Oxygen and Dissolved Inorganic Carbon in the Littoral Zone of a Macrophyte-Dominated Lake

    Martinsen, K. T., Zak, N. B., Båstrup-Spohr, Lars, Kragh, T. & Sand-Jensen, Kaj, 2022, In: Journal of Geophysical Research: Biogeosciences. 127, 12, 15 p., e2022JG007193.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Editorial: Hormones and Life History Strategies

    McMenamin, S., Shkil, F. & Koyama, Takashi, 2022, In: Frontiers in Ecology and Evolution. 10, 3 p., 838555.

    Research output: Contribution to journal › Editorial › Research › peer-review

  61. Published

    Editorial: Ecophysiology and biogeochemistry of marine plants in the anthropocene

    Brodersen, Kasper Elgetti, Trevathan-Tackett, S. M., Noisette, F., Björk, M., Larkum, A. W. D., Holmer, M. & Kühl, Michael, 2022, In: Frontiers in Marine Science. 9, 4 p., 1010651.

    Research output: Contribution to journal › Editorial › Research › peer-review

  62. Published

    Effect of gastrointestinal alterations mimicking elderly conditions on in vitro digestion of meat and soy proteins

    Wang, Chong, Zhao, Fan, Bai, Y., Li, C., Xu, X., Kristiansen, Karsten & Zhou, G., 2022, In: Food Chemistry. 383, 9 p., 132465.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination

    Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Effect of naturally-occurring mutations on the stability and function of cancer-associated NQO1: Comparison of experiments and computation

    Pacheco-Garcia, J. L., Cagiada, Matteo, Tienne-Matos, K., Salido, E., Lindorff-Larsen, Kresten & L. Pey, A., 2022, In: Frontiers in Molecular Biosciences. 9, 17 p., 1063620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Effect of perfluoroalkyl exposure in pregnancy and infancy on intrauterine and childhood growth and anthropometry. Sub study from COPSAC2010 birth cohort

    Sevelsted, A., Gürdeniz, G., Rago, D., Pedersen, C. T., Lasky-Su, J. A., Checa, A., Zhang, P., Wheelock, C. E., Normann, S. S., Kristensen, D. M., Rasmussen, Morten Arendt, Schullehner, J., Sdougkou, K., Martin, J. W., Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2022, In: EBioMedicine. 83, 12 p., 104236.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Effects of Different Storage Temperatures on Bacterial Communities and Functional Potential in Pork Meat

    Zhao, Fan, Wei, Z., Zhou, G., Kristiansen, Karsten & Wang, Chong, 2022, In: Foods. 11, 15, 12 p., 2307.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Effects of Epiphytes on the Seagrass Phyllosphere

    Brodersen, Kasper Elgetti & Kühl, Michael, 2022, In: Frontiers in Marine Science. 9, 10 p., 821614.

    Research output: Contribution to journal › Review › Research › peer-review

  68. Published

    Effects of Epiphytic Biofilm Activity on the Photosynthetic Activity, pH and Inorganic Carbon Microenvironment of Seagrass Leaves (Zostera marina L.)

    Zhang, Q., Kühl, Michael & Brodersen, Kasper Elgetti, 2022, In: Frontiers in Marine Science. 9, 11 p., 835381.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Effects of LPS Composition in Escherichia coli on Antibacterial Activity and Bacterial Uptake of Antisense Peptide-PNA Conjugates

    Goltermann, Lise, Zhang, Meiqin, Ebbensgaard, Anna Elisabeth, Fiodorovaite, M., Yavari, Niloofar, Løbner-Olesen, Anders & Nielsen, Peter E., 2022, In: Frontiers in Microbiology. 13, 877377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome

    Thompson, K. N., Oulhote, Y., Weihe, P., Wilkinson, J. E., Ma, S., Zhong, H., Li, J., Kristiansen, Karsten, Huttenhower, C. & Grandjean, P., 2022, In: Environmental Science & Technology. 56, 23, p. 16985-16995 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Effects of decadal nitrogen addition on carbon and nitrogen stocks in different organic matter fractions of typical steppe soils

    Niu, G., Liu, L., Wang, Y., Guan, H., Ning, Q., Liu, T., Rousk, Kathrin, Zhong, B., Yang, J., Lu, X., Han, X. & Huang, J., 2022, In: Ecological Indicators. 144, 9 p., 109471.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Effects of leaf surface temperature and plant traits on volatile organic compound emission from tundra vegetation

    Simin, Tihomir, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 196 p.

    Research output: Book/Report › Ph.D. thesis › Research

  73. Published

    Effects of pollution-induced changes in oxygen conditions scaling up from individuals to ecosystems in a tropical river network

    Eriksen, T. E., Jacobsen, Dean, Demars, B. O. L., Brittain, J. E., Søli, G. & Friberg, N., 2022, In: Science of the Total Environment. 814, 11 p., 151958.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Efficient approaches for large-scale GWAS with genotype uncertainty

    Jørsboe, E. & Albrechtsen, Anders, 2022, In: G3: Genes, Genomes, Genetics (Bethesda). 12, 1, 9 p., jkab385.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells

    Bakoulis, Stylianos, Krautz, Robert, Alcaraz, N., Salvatore, Marco & Andersson, Robin, 2022, In: Nucleic acids symposium series. 50, 4, p. 2111-2127 17 p., 088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

    Wang, F., Ding, P., Liang, X., Ding, X., Brandt, C. B., Sjöstedt, E., Zhu, J., Bolund, S., Zhang, L., de Rooij, L. P. M. H., Luo, L., Wei, Y., Zhao, W., Lv, Z., Haskó, J., Li, R., Qin, Q., Jia, Y., Wu, W., Yuan, Y. & 25 others, Pu, M., Wang, H., Wu, A., Xie, L., Liu, P., Chen, F., Herold, J., Kalucka, J., Karlsson, M., Zhang, X., Helmig, R. B., Fagerberg, L., Lindskog, C., Pontén, F., Uhlen, M., Bolund, L., Jessen, N., Jiang, H., Xu, X., Yang, H., Carmeliet, P., Mulder, J., Chen, D., Lin, L. & Luo, Y., 2022, In: Nature Communications. 13, 18 p., 3620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Engineering Bifidobacterium longum Endo-α-N-acetylgalactosaminidase for Neu5Acα2-3Ga1β1-3Ga1NAc reactivity on Fetuin

    Hansen, D. K., Hansen, A. L., Koivisto, J. M., Shuoker, B., Abou Hachem, M., Winther, Jakob R. & Willemoës, Martin, 2022, In: Archives of Biochemistry and Biophysics. 725, 8 p., 109280.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Enhanced Antibiotic Tolerance of an In Vitro Multispecies Uropathogen Biofilm Model, Useful for Studies of Catheter‐Associated Urinary Tract Infections

    Hou, J., Wang, L., Alm, M., Thomsen, P., Monsen, T., Ramstedt, M. & Burmølle, Mette, 2022, In: Microorganisms. 10, 6, 15 p., 1207.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Entanglement in a qubit-qubit-tardigrade system

    Lee, K. S., Tan, Y. P., Nguyen, L. H., Budoyo, R. P., Park, K. H., Hufnagel, C., Yap, Y. S., Møbjerg, Nadja, Vedral, V., Paterek, T. & Dumke, R., 2022, In: New Journal of Physics. 24, 13 p., 123024.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Environmental drivers and sources of stream oxygen consumption in an agricultural lake catchment

    Sø, Jonas Stage, Kragh, T., Sand-Jensen, Kaj & Martinsen, K. T., 2022, In: Ecological Engineering. 176, 11 p., 106516.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases

    Mohammadi, S., Özdemir, H. İ., Ozbek, P., Sumbul, F., Stiller, Josefin, Deng, Y., Crawford, A. J., Rowland, H., Storz, J., Andolfatto, P. & Dobler, S., 2022, In: Molecular Biology and Evolution. 39, 12, 13 p., msac258.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Escaping from multiple visual threats: modulation of escape responses in Pacific staghorn sculpin (Leptocottus armatus)

    Kimura, H., Pfalzgraff, T., Levet, M., Kawabata, Y., Steffensen, John Fleng, Johansen, J. L. & Domenici, P., 2022, In: The Journal of Experimental Biology. 225, 9, 9 p., jeb243328.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Estimating intrinsic growth rates of arthropods from partial life tables using predatory mites as examples

    Janssen, A., Fonseca, M. M., Marcossi, I., Kalile, M. O., Cardoso, A. C., Walerius, A. H., Hanel, A., Marques, V., Ferla, J. J., Farias, V., Carbajal, P. A. F., Pallini, A. & Nachman, Gøsta Støger, 2022, In: Experimental and Applied Acarology. 86, 3, p. 327-342 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  84. Published

    Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage

    Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Estimation of the covariance structure from SNP allele frequencies

    van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Euchromatin factors HULC and Set1C affect heterochromatin organization and mating-type switching in fission yeast Schizosaccharomyces pombe

    Esquivel-Chávez, A., Maki, T., Tsubouchi, H., Handa, T., Kimura, H., Haber, J. E., Thon, Genevieve & Iwasaki, H., 2022, In: Genes and Genetic Systems. 97, 3, p. 123-138 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome

    van der Valk, T., Dehasque, M., Chacón-Duque, J. C., Oskolkov, N., Vartanyan, S., Heintzman, P. D., Chrzanová Pecnerová, Patrícia, Díez-del-Molino, D. & Dalén, L., 2022, In: iScience. 25, 8, 11 p., 104826.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Existence of log-phase Escherichia coli persisters and lasting memory of a starvation pulse

    Svenningsen, Mikkel Skjoldan, Svenningsen, Sine Lo, Sørensen, Michael Askvad & Mitarai, Namiko, 2022, In: Life Science Alliance. 5, 2, 9 p., e202101076.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Explicitly modelling microtopography in permafrost landscapes in a land surface model (JULES vn5.4_microtopography)

    Smith, N. D., Burke, E. J., Aas, K. S., Althuizen, I. H. J., Boike, J., Christiansen, C. T., Etzelmüller, B., Friborg, Thomas, Lee, H., Rumbold, H., Turton, R. H., Westermann, S. & Chadburn, S. E., 2022, In: Geoscientific Model Development. 15, 9, p. 3603-3639 37 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Exploration of Intratumor Heterogeneity and Tumoral Microenvironment in Non-small Cell Lung Cancer

    Zhao, X., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 137 p.

    Research output: Book/Report › Ph.D. thesis › Research

  91. Published

    Exploring farmers’ perception, knowledge, and management techniques of salt-affected soils to enhance rice production on small land holdings in Tanzania

    Omar, M. M., Shitindi, M. J., Massawe, B. H. J., Fue, K. G., Pedersen, Ole & Meliyo, J. L., 2022, In: Cogent Food and Agriculture. 8, 1, 20 p., 2140470.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Expression and characterization of disulfide-rich toxins from venomous cone snails

    Hackney, Celeste Menuet, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 163 p.

    Research output: Book/Report › Ph.D. thesis › Research

  93. Published

    Expression of Opsins of the Box Jellyfish Tripedalia cystophora Reveals the First Photopigment in Cnidarian Ocelli and Supports the Presence of Photoisomerases

    Garm, Anders Lydik, Svaerke, J., Pontieri, D. & Oakley, T. H., 2022, In: Frontiers in Neuroanatomy. 16, 13 p., 916510.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    External Phosphorus Loading in New Lakes

    Kragh, T., Kolath, T., Kolath, A. S., Reitzel, K., Martinsen, K. T., Søndergaard, M., Hoffmann, C. C., Båstrup-Spohr, Lars & Egemose, S., 2022, In: Water. 14, 7, 21 p., 1008.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Extrachromosomal circular DNA in cancer: history, current knowledge, and methods

    Noer, Julie Boertmann, Hørsdal, O. K., Xiang, X., Luo, Y. & Regenberg, Birgitte, 2022, In: Trends in Genetics. 38, 7, p. 766-781 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  96. Published

    Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription: [Corrigendum]

    Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Neves, R. C., Jørgensen, Aslak, Schiøtt, M., Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 271, 8 p., 111245.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals

    Zadel, U., Cruzeiro, C., Raj Durai, A. C., Nesme, Joseph, May, R., Balázs, H., Michalke, B., Płaza, G., Schröder, P., Schloter, M. & Radl, V., 2022, In: Environmental Pollution. 313, 13 p., 119989.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Fagligt grundlag for naturløfter for Friland oksekød

    Ejrnæs, R. & Bruun, Hans Henrik, 2022, Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi. 17 p. (Fagligt notat fra DCE – Nationalt Center for Miljø og Energi, Vol. 21).

    Research output: Book/Report › Report › Commissioned

  99. Published

    False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

    Kim, J., Lee, C., Ko, B. J., Yoo, D. A., Won, S., Phillippy, A. M., Fedrigo, O., KU, thw266, Howe, K., Wood, J., Durbin, R., Formenti, G., Brown, S., Cantin, L., Mello, C. V., Cho, S., Rhie, A., Kim, H. & Jarvis, E. D., 2022, In: Genome Biology. 23, 29 p., 204.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    First account on Loricifera from New Zealand: A new species of Pliciloricus, and a Shira larva with postlarva representing the new genus and species Patuloricus tangaroa gen. et sp. nov

    Sørensen, Martin Vinther, Grzelak, K., Kristensen, Reinhardt Møbjerg & Herranz, Maria, 2022, In: Zoologischer Anzeiger. 299, p. 207-220 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    First circumpolar assessment of Arctic freshwater phytoplankton and zooplankton diversity: Spatial patterns and environmental factors

    Schartau, A. K., Mariash, H. L., Christoffersen, Kirsten Seestern, Bogan, D., Dubovskaya, O. P., Fefilova, E. B., Hayden, B., Ingvason, H. R., Ivanova, E. A., Kononova, O. N., Kravchuk, E. S., Lento, J., Majaneva, M., Novichkova, A. A., Rautio, M., Rühland, K. M., Shaftel, R., Smol, J. P., Vrede, T. & Kahilainen, K. K., 2022, In: Freshwater Biology. 67, 1, p. 141-158 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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