Department of Biology

 

 
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  1. 2024
  2. E-pub ahead of print

    BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum

    Leader, D. P., Naseem, Muhammad Tayyib & Halberg, Kenneth Veland, 2024, (E-pub ahead of print) In: Journal of Molecular Biology. 168520.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Genomic and functional diversity of cultivated Bifidobacterium from human gut microbiota

    Li, W., Liang, H., He, W., Gao, X., Wu, Z., Hu, T., Lin, X., Wang, M., Zhong, Y., Zhang, H., Ge, L., Jin, X., Xiao, L. & Zou, Y., 2024, In: Heliyon. 10, 5, 14 p., e27270.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition

    Li, Xuan Ji, Brejnrod, A., Trivedi, Urvish, Russel, J., Thorsen, J., Shah, S. A., Vestergaard, G. A., Rasmussen, Morten Arendt, Nesme, Joseph, Bisgaard, H., Stokholm, Jakob & Sørensen, Søren Johannes, 2024, In: Microbiome. 12, 1, 18 p., 87.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    vcfpp: a C++ API for rapid processing of the variant call format

    Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Flooding-adaptive root and shoot traits in rice

    Lin, C., Zhang, Z., Shen, X., Liu, Dan & Pedersen, Ole, 2024, In: Functional Plant Biology. 51, 1, 13 p., FP23226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Investigating the role of TGF-β and BDNF in cancer-related depression: a primary cross-sectional study

    Lin, J., Xiao, L., Nie, Xinchen, Wang, Z., Luo, Y., Zhang, L. & Liu, Yawei, 2024, In: Supportive Care in Cancer. 32, 6, 9 p., 365.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Isolation of potentially novel species expands the genomic and functional diversity of Lachnospiraceae

    Lin, X., Hu, T., Wu, Z., Li, L., Wang, Y., Wen, D., Liu, X., Li, W., Liang, H., Jin, X., Xu, X., Wang, J., Yang, H., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: iMeta. 3, 2, 18 p., e174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations

    Liu, X., Lin, L., Sinding, M. H. S., Bertola, L. D., Hanghøj, K., Quinn, L., Garcia-Erill, G., Rasmussen, M. S., Schubert, M., Pečnerová, P., Balboa, R. F., Li, Z., Heaton, M. P., Smith, T. P. L., Pinto, R. R., Wang, X., Kuja, J., Brüniche-Olsen, A., Meisner, J., Santander, C. G. & 8 others, Ogutu, J. O., Masembe, C., Rodrigues da Fonseca, Rute Andreia, Muwanika, V., Siegismund, Hans Redlef, Albrechtsen, Anders, Moltke, Ida & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 16 p., 2921.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Can large language models reason about medical questions?

    Liévin, V., Hother, C. E., Motzfeldt, A. G. & Winther, Ole, 2024, In: Patterns. 5, 3, 12 p., 100943.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Transmembrane transporter proteins: Capturing transport in motion

    Loland, Claus Juul, Wellendorph, Petrine, Pedersen, Stine Helene Falsig & Gether, Ulrik, 2024, In: Basic and Clinical Pharmacology and Toxicology. 134, 2, p. 203-205 3 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  12. Published

    Nitrogen uptake in lentil cultivar mixtures is not predictable from pure stands performance but is correlated with agronomic parameters and experimental conditions

    Lorenzetti, E., Carlesi, S., Michelsen, Anders & Bàrberi, P., 2024, In: Agriculture and Food Security. 13, 1, 13 p., 11.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity

    Lourenço, L., Ellegaard Bager, S., Ng, D. Y. K., Sheikh, Sanea, Kindtler, Nikolaj Lunding, Nielsen, Ida Broman, Frøslev, Tobias Guldberg & Ekelund, Flemming, 2024, In: Protist. 175, 2, 9 p., 126016.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Changes in composition and function of soil microbial communities during secondary succession in oldfields on the Tibetan Plateau

    Ma, Hui, Yan, X., Gao, E., Qiu, Y., Sun, X., Wang, S., Wang, Y., Bruun, Hans Henrik, He, Z., Shi, X. & Zhao, Z., 2024, In: Plant and Soil. 495, p. 429–443 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Phytoremediation in the Guadiamar Green Corridor (SW Spain): Trace element uptake by plants and effects on soil fungal diversity

    Madejón, P., Domínguez, M. T., Gil-Martínez, M. & Madejón, E., 2024, In: Advances in Botanical Research. 109, p. 255-294 40 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Environmental drivers of increased ecosystem respiration in a warming tundra

    Maes, S. L., Dietrich, J., Midolo, G., Schwieger, S., Kummu, M., Vandvik, V., Aerts, R., Althuizen, I. H. J., Biasi, C., Björk, R. G., Böhner, H., Carbognani, M., Chiari, G., Christiansen, C. T., Clemmensen, K. E., Cooper, E. J., Cornelissen, J. H. C., Elberling, B., Faubert, P., Fetcher, N. & 56 others, Forte, T. G. W., Gaudard, J., Gavazov, K., Guan, Z., Guðmundsson, J., Gya, R., Hallin, S., Hansen, B. B., Haugum, S. V., He, J. S., Hicks Pries, C., Hovenden, M. J., Jalava, M., Jónsdóttir, I. S., Juhanson, J., Jung, J. Y., Kaarlejärvi, E., Kwon, M. J., Lamprecht, R. E., Le Moullec, M., Lee, H., Marushchak, M. E., Michelsen, Anders, Munir, T. M., Myrsky, E. M., Nielsen, C. S., Nyberg, M., Olofsson, J., Óskarsson, H., Parker, T. C., Pedersen, Emily Pickering, Petit Bon, M., Petraglia, A., Raundrup, K., Ravn, N. M. R., Rinnan, Riikka, Rodenhizer, H., Ryde, Ingvild, Schmidt, N. M., Schuur, E. A. G., Sjögersten, S., Stark, S., Strack, M., Tang, J., Tolvanen, A., Töpper, J. P., Väisänen, M. K., van Logtestijn, R. S. P., Voigt, C., Walz, J., Weedon, J. T., Yang, Y., Ylänne, H., Björkman, M. P., Sarneel, J. M. & Dorrepaal, E., 2024, In: Nature. 629, 8010, p. 105-113 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Human P2X7 receptor variants Gly150Arg and Arg276His polymorphisms have differential effects on risk association and cellular functions in pancreatic cancer

    Magni, Lara, Yu, Haoran, Christensen, Nynne, Poulsen, Mette Homann, Frueh, A., Deshar, Ganga, Johansen, A. Z., Johansen, Julia Sidenius, Pless, Stephan, Jørgensen, Niklas Rye & Novak, Ivana, 2024, In: Cancer Cell International. 24, 1, 16 p., 148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Impact of salinity and temperature on the vital rates of co-occurring Calanus glacialis and C. finmarchicus from West Greenland

    Makri, M., Hansen, Per Juel & Gissel Nielsen, T., 2024, In: Marine Ecology - Progress Series. 729, p. 47-62 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. E-pub ahead of print

    Carbon and nitrogen uptake through photosynthesis and feeding by photosymbiotic Acantharia

    Mansour, J. S., Hansen, Per Juel, Leroux, C. & Not, F., 2024, (E-pub ahead of print) In: Open Research Europe.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Inhibitors of bacterial immune systems: discovery, mechanisms and applications

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Camara, Sarah, Birkholz, N. & Fineran, P. C., 2024, In: Nature Reviews Genetics. 25, 4, p. 237-254 18 p.

    Research output: Contribution to journal › Review › Research › peer-review

  21. Published

    Ancient and Modern Genomes Reveal Microsatellites Maintain a Dynamic Equilibrium Through Deep Time

    McComish, B. J., Charleston, M. A., Parks, M., Baroni, C., Salvatore, M. C., Li, R., KU, thw266, Millar, C. D., Holland, B. R. & Lambert, D. M., 2024, In: Genome Biology and Evolution. 16, 3, 11 p., evae017.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    MCT4 and CD147 colocalize with MMP14 in invadopodia and support matrix degradation and invasion by breast cancer cells

    Meng, Signe, Sørensen, E. E., Ponniah, M., Thorlacius-Ussing, J., Crouigneau, R., Larsen, T., Borre, M. T., Willumsen, N., Flinck, M. & Pedersen, Stine Helene Falsig, 2024, In: Journal of Cell Science. 137, 8, 15 p., jcs261608.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A region of suppressed recombination misleads neoavian phylogenomics

    Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The Advancement in Spring Vegetation Phenology in the Northern Hemisphere Will Reverse After 2060 Under Future Moderate Warming Scenarios

    Mo, Y., Chen, S., Wu, Z., Tang, Jing & Fu, Y., 2024, In: Earth's Future. 12, 3, 17 p., e2023EF003788.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Long-term phytoplankton dynamics in two High Arctic lakes (north-east Greenland)

    Moedt, Sanne Mariël, Olrik, K., Schmidt, N. M., Jeppesen, E. & Christoffersen, Kirsten Seestern, 2024, In: Freshwater Biology. 69, 3, p. 403-415 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    FRETpredict: a Python package for FRET efficiency predictions using rotamer libraries

    Montepietra, D., Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Best, R. B. & Lindorff-Larsen, Kresten, 2024, In: Communications Biology . 7, 1, 10 p., 298.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Controlling biases in targeted plant removal experiments

    Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering & Väisänen, M., 2024, In: New Phytologist. 242, 4, p. 1835-1845 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. E-pub ahead of print

    Impact of the early COVID-19 pandemic on adult mental health-related dispensed medications, hospitalizations and specialist outpatient visits in Norway and Sweden: Interrupted time series analysis

    Moreno-Martos, D., Zhao, J., Li, H., Nyberg, F., Bjørndal, L. D., Hajiebrahimi, M., Wettermark, B., Aakjær, Mia, Andersen, Morten, Sessa, Maurizio, Lupattelli, A., Nordeng, H. & Morales, D. R., 2024, (E-pub ahead of print) In: British Journal of Clinical Pharmacology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Intake of different types of seafood and meat and risk of type 2 diabetes in women: a prospective study supported by a dietary intervention in mice

    Myrmel, L. S., Øyen, J., Brantsæter, A. L., Fjære, E., Haugvaldstad, K., Birkeland, K. I., Nygård, O., Kristiansen, Karsten, Egeland, G. M. & Madsen, L., 2024, In: Scientific Reports. 14, 1, 14 p., 8950.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. E-pub ahead of print

    Net O2 exchange rates under dark and light conditions across different stem compartments

    Natale, S., Peralta Ogorek, Lucas León, Caracciolo, L., Morosinotto, T., van Amerongen, H., Casolo, V., Pedersen, Ole & Nardini, A., 2024, (E-pub ahead of print) In: New Phytologist.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Acclimation of subarctic vegetation to warming and increased cloudiness

    Ndah, F. A., Maljanen, M., Kasurinen, A., Rinnan, Riikka, Michelsen, Anders, Kotilainen, T. & Kivimäenpää, M., 2024, In: Plant-Environment Interactions. 5, 1, 16 p., e10130.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Checkpoint activation by Spd1: a competition-based system relying on tandem disordered PCNA binding motifs

    Olsen, Johan Gotthardt, Prestel, Andreas, Kassem, N., Broendum, S. S., Hossain, Mohammad Shamim, Simonsen, Signe, Grysbæk, M., Mortensen, J., Rytkjær, L. L., Haxholm, G. W., Marabini, R., Holmberg, Christian, Carr, A. M., Crehuet, R., Nielsen, Olaf & Kragelund, Birthe Brandt, 2024, In: Nucleic acids symposium series. 52, 4, p. 2030–2044 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Assessment of salt-affected soil in selected rice irrigation schemes in Tanzania: understanding salt types for optimizing management approaches

    Omar, M. M., Massawe, B. H. J., Shitindi, M. J., Pedersen, Ole, Meliyo, J. L. & Fue, K. G., 2024, In: Frontiers in Soil Science. 4, 14 p., 1372838.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Drosophila cytokine GBP2 exerts immune responses and regulates GBP1 expression through GPCR receptor Mthl10

    Ono, M., Matsumura, T., Sung, E. J., Koyama, Takashi, Ochiai, M., Shears, S. B. & Hayakawa, Y., 2024, In: Insect Biochemistry and Molecular Biology. 167, 7 p., 104086.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Calls of the little auk (Alle alle) chicks reflect their behavioural contexts

    Osiecka, A. N., Briefer, Elodie, Kidawa, D., Żurawska, F. & Wojczulanis-Jakubas, K., 2024, In: PLoS ONE. 19, 2, 14 p., e0299033.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Isochrony in barks of Cape fur seal (Arctocephalus pusillus pusillus) pups and adults

    Osiecka, A. N., Fearey, J., Ravignani, A. & Burchardt, L. S., 2024, In: Ecology and Evolution. 14, 3, 11 p., e11085.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Strong individual distinctiveness across the vocal repertoire of a colonial seabird, the little auk, Alle alle

    Osiecka, A. N., Briefer, Elodie, Kidawa, D. & Wojczulanis-Jakubas, K., 2024, In: Animal Behaviour. 210, p. 199-211 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    The rostral micro-tooth morphology of blue marlin, Makaira nigricans

    Pacher, K., Breuker, M., Hansen, M. J., Kurvers, R. H. J. M., Häge, J., Dhellemmes, F., Domenici, P., Steffensen, John Fleng, Krause, S., Hildebrandt, T., Fritsch, G., Bach, P., Sabarros, P. S., Zaslansky, P., Mahlow, K., Müller, J., Armas, R. G., Ortiz, H. V., Galván-Magaña, F. & Krause, J., 2024, In: Journal of Fish Biology. 104, 3, p. 713-722 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Comparative skull osteology of Amphisbaena arda and Amphisbaena vermicularis (Squamata: Amphisbaenidae)

    Paiva, C. L., Hipsley, Christy Anna, Müller, J., Zaher, H. & Costa, H. C., 2024, In: Journal of Morphology. 285, 5, 14 p., e21702.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Accounting for Winter Warming Events in the Ecosystem Model LPJ-GUESS: Evaluation and Outlook

    Pascual, D., Johansson, M., Pongracz, A. & Tang, Jing, 2024, In: Journal of Geophysical Research: Biogeosciences. 129, 3, 13 p., e2023JG007464.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts

    Pearman, P. B., Broennimann, O., Aavik, T., Albayrak, T., Alves, P. C., Aravanopoulos, F. A., Bertola, L. D., Biedrzycka, A., Buzan, E., Cubric-Curik, V., Djan, M., Fedorca, A., Fuentes-Pardo, A. P., Fussi, B., Godoy, J. A., Gugerli, F., Hoban, S., Holderegger, R., Hvilsom, C., Iacolina, L. & 32 others, Kalamujic Stroil, B., Klinga, P., Konopiński, M. K., Kopatz, A., Laikre, L., Lopes-Fernandes, M., McMahon, B. J., Mergeay, J., Neophytou, C., Pálsson, S., Paz-Vinas, I., Posledovich, D., Primmer, C. R., Raeymaekers, J. A. M., Rinkevich, B., Rolečková, B., Ruņģis, D., Schuerz, L., Segelbacher, G., Kavčič Sonnenschein, K., Stefanovic, M., Thurfjell, H., Träger, S., Tsvetkov, I. N., Velickovic, N., Vergeer, P., Vernesi, C., Vilà, C., Westergren, M., Zachos, F. E., Guisan, A. & Bruford, M., 2024, In: Nature Ecology and Evolution. 8, p. 267–281 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Function and induction of the root barrier to radial O2 loss. A commentary on ‘Exogenous abscisic acid induces the formation of a suberized barrier to radial oxygen loss in adventitious roots of barley (Hordeum vulgare)’

    Pedersen, Ole & Jimenez Serna, Juan de la Cruz, 2024, In: Annals of Botany. 133, 7, 4 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  43. Published

    Acid–base transporters in the context of tumor heterogeneity

    Pedersen, Stine Helene Falsig, 2024, In: Pflugers Archiv European Journal of Physiology. 476, p. 689–701 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    Root acclimations to soil flooding prime rice (Oryza sativa L.) for subsequent conditions of water deficit

    Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa, Liu, Fulai, Tomasella, M., Nardini, A. & Pedersen, Ole, 2024, In: Plant and Soil. 494, p. 529-546

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Going through changes - the role of autophagy during reprogramming and differentiation

    Petersen, Morten, Ebstrup, E. & Rodriguez, Eleazar, 2024, In: Journal of Cell Science. 137, 4, 10 p., jcs261655.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    Extrachromosomal Circular DNA: An Emerging Potential Biomarker for Inflammatory Bowel Diseases?

    Petito, V., Di Vincenzo, F., Putignani, L., Abreu, M. T., Regenberg, Birgitte, Gasbarrini, A. & Scaldaferri, F., 2024, In: Genes. 15, 4, 11 p., 414.

    Research output: Contribution to journal › Review › Research › peer-review

  47. Published

    Population genomics of the muskox' resilience in the near absence of genetic variation

    Pečnerová, P., Lord, E., Garcia-Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., Lin, L., Liu, S., Carøe, C., Dalerum, F., Götherström, A., Måsviken, J., Vartanyan, S., Raundrup, K., Al-Chaer, A., Rasmussen, L. & 11 others, Hvilsom, C., Heide-Jørgensen, M. P., Sinding, Mikkel Holger Strander, Aastrup, P., Van Coeverden de Groot, P. J., Schmidt, N. M., Albrechtsen, Anders, Dalén, L., Heller, Rasmus, Moltke, Ida & Siegismund, Hans Redlef, 2024, In: Molecular Ecology. 33, 2, 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. E-pub ahead of print

    MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts

    Philipp, M., Moth, C. W., Ristic, N., Tiemann, Johanna Katarina Sofie, Seufert, F., Panfilova, Aleksandra, Meiler, J., Hildebrand, P. W., Stein, Amelie, Wiegreffe, D. & Staritzbichler, R., 2024, (E-pub ahead of print) In: Nucleic Acids Research. gkae301.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Water quality in a shallow eutrophic lake is unaffected by extensive thinning of planktivorous and benthivorous fish species

    Polauke, E., Sø, Jonas Stage, Carl, Henrik, Møller, Peter Rask, Reitzel, K., Sand-Jensen, Kaj & Kragh, T., 2024, In: Journal of Environmental Management. 356, 13 p., 120570.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator

    Popovic, I., Bergeron, Lucie Adrienne, Bozec, Y. M., Waldvogel, A. M., Howitt, S. M., Damjanovic, K., Patel, F., Cabrera, M. G., Wörheide, G., Uthicke, S. & Riginos, C., 2024, In: PLOS Genetics. 20, 2, 22 p., e1011129.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark

    Pust, F. L., Frøslev, Tobias Guldberg, Kristensen, Reinhardt Møbjerg & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 20-33

    Research output: Contribution to journal › Journal article › Research › peer-review

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