Department of Biology

 

 
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  1. 2024
  2. Published

    AI Implementation and Capability Development in Manufacturing: An Action Research Case

    Eklöf, Jon, Snis, U. L., Hamelryck, Thomas Wim, Grima, A. & Rønning, Ola, 2024, Proceedings of the 57th Hawaii International Conference on System Sciences - HICSS 2024. Hawaii International Conference on System Sciences, 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  3. 2023
  4. Published

    Enhancing Flood Tolerance in Wheat (Triticum aestivum) and Rice (Oryza sativa): Identifying Key Physiological Traits

    Herzog, Max, Tong, Shuai, Kjær, Johan Emil, Konnerup, D., Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa & Pedersen, Ole, 2023. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  5. Published

    Linkages between seagrass tissue O2 dynamics and ecosystem oxidation and feedbacks are revealed using microsensors in situ

    Koch, M., Johnson, C., MacLeod, K., Travis, L., Madden, C. & Pedersen, Ole, 2023, p. 221. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  6. Published

    Restricted O2 consumption in pea roots induced by hexanoic acid is linked to depletion of Krebs cycle substrates

    Gargiulo, S., Casolo, V., Zancani, M., Pellegrini, Elisa, Filippi, A., Konnerup, D., Morandini, P. & Pedersen, Ole, 2023, p. 55. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  7. Published

    Variational Open-Domain Question Answering

    Liévin, V., Motzfeldt, A. G., Jensen, I. R. & Winther, Ole, 2023, In: Proceedings of Machine Learning Research. 202, p. 20950-20977 28 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  8. 2022
  9. Published

    ATP signaling in pancreatic cancer: the P2X7 receptor

    Magni, Lara, Bouazzi, R., Christensen, Nynne, Tozzi, M., Poulsen, M., Johansen, J., Pless, Stephan & Novak, Ivana, 2022, In: Acta Physiologica. 236, S725, p. 661-661

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  10. Published

    Hypoxia in tomato fruit during ripening caused by contrasting tissue-specific diffusion resistance and respiration

    Xiao, H., Tong, Shuai, Salagovic, J., Pedersen, Ole, Verboven, P. & Nicolaï, B. M., 2022, p. 48.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  11. Published

    Linkages between seagrass tissue O2 dynamics and ecosystem oxidation and feedbacks revealed using microsensors in situ

    Koch, M., Johnson, C., MacLeod, K., Travis, L., Madden, C. & Pedersen, Ole, 2022, p. 22. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  12. Published

    Molecular mechanisms that underlie the root cortex expansion in response to low oxygen

    Yamauchi, T., Sumi, K., Morishita, H., Pedersen, Ole, Inukai, Y. & Nakazono, M., 2022, p. 22.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  13. Published

    Multiple stressors linked to internal O2 imbalance contribute to seagrass die-off in a subtropical lagoon: Resilience with steep cliffs and cascading consequences

    Koch, M., Johnson, C., MacLeod, K., Travis, L., Madden, C. & Pedersen, Ole, 2022.

    Research output: Contribution to conference › Poster › Research › peer-review

  14. Published

    Sialylation of N-glycans affects the lipid secretion governed by specialized secretory lysosomal organelles through an effect on the V-ATPase

    Khoder-Agha, F., Song, Ming, Borre, M. T., Marinova, I. N., Ye, Z., Pedersen, Stine Helene Falsig, Dabelsteen, Sally & Wandall, Hans H., 2022, In: Glycobiology. 32, 11, p. 1012-1013 2 p., P103.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  15. Published

    The barrier to radial oxygen loss prevents H2S intrusion and its toxic effect

    Peralta Ogorek, Lucas León, Takahashi, H., Nakazono, M. & Pedersen, Ole, 2022, p. 15.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  16. Published

    The rice wax synthesis-related gene Leaf Gas Film-1 (LGF1) is involved in the formation of the radial oxygen loss barrier

    de la Cruz Jiménez, J., Noorrohmah, S., Zeisler, V., Schreiber, L., Peralta Ogorek, Lucas León, Pellegrini, Elisa, Pedersen, Ole, Nagai, K., Ashikari, M., Takahashi, H. & Nakazono, M., 2022, p. 67.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  17. Published

    The root barrier to radial oxygen loss: a jack of all trades

    Peralta Ogorek, Lucas León, Tong, Shuai, Kjær, Johan Emil, Song, Zhiwei, Bastegaard, V. K., Zonta, F., Yamauchi, T., de la Cruz Jiménez, J., Takahashi, H., Nakazono, M., Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2022, p. 14.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  18. 2021
  19. Published

    Characterizing Conformational Changes of ASIC1a During Gating and Peptide Modulation

    Heusser, Stephanie, Sheikh, Zeshan Pervez, Borg, C. B., Galleano, I. & Pless, Stephan, 2021, p. 337A-337A.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  20. Published

    Effects of flooding stress on the saltmarsh halophyte Salicornia fruticosa (L.) L. upscaling perspectives

    Vuerich, M., Cingano, P., Petrussa, E., Braidot, E., Pellegrini, Elisa, Mestroni, M. & Boscutti, F., 2021, p. 97. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  21. Published

    Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model

    Thygesen, Christian Bahne, Al-Sibahi, A. S., Steenmanns, C. S., Sanz Moreta, Lys, Sørensen, A. B. & Hamelryck, Thomas Wim, 2021, International Conference on Machine Learning, 18-24 July 2021, Virtual. PMLR, p. 10258-10267 (Proceedings of Machine Learning Research, Vol. 139).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  22. Published

    Time-efficient Bayesian Inference for a (Skewed) von Mises Distribution on the Torus in a Deep Probabilistic Programming Language

    Rønning, Ola, Ley, C., Mardia, K. V. & Hamelryck, Thomas Wim, 2021, 2021 IEEE International Conference on Multisensor Fusion and Integration for Intelligent Systems (MFI). IEEE, p. 1-8

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  23. 2020
  24. Published

    Bayesian protein superposition using Hamiltonian Monte Carlo

    Sanz Moreta, Lys, Al-Sibahi, A. S. & Hamelryck, Thomas Wim, Oct 2020, Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020. IEEE, p. 1-11 9288019

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  25. Published

    Slope hydrology and permafrost: The effect of snowmelt N transport on downslope ecosystem

    Rasmussen, Laura Helene, Ambus, Per Lennart, Zhang, W., Jansson, P. E., Michelsen, Anders & Elberling, Bo, 1 May 2020. 2 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  26. Published

    Internal leaf and meristem O2 and H2S dynamics of a tropical seagrass identify mechanisms of large-scale die-off events

    Johnson, C. R., Koch, M., McNicholl, C., Pedersen, Ole & Madden, C. J., 16 Feb 2020.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  27. Published

    Exploring the Protein-Membrane Interactions on the Intracellular Side of PRLR

    Araya-Secchi, R., Bugge, K., Kragelund, Birthe Brandt & Arleth, Lise, 7 Feb 2020, In: Biophysical Journal. 118, 3, Suppl.1, p. 57A-57A 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  28. Published

    Small-angle Neutron Scattering Shows that the Solution Structures of the Bacterial Mg2+-Channel CorA are Overall Similar with and without Mg2+ Bound

    Arleth, Lise, Johansen, Nicolai Tidemand, Bengtsen, T., Larsen, A. H., Tidemand, Frederik Grønbæk, Pomorski, Thomas Guenther & Lindorff-Larsen, Kresten, 7 Feb 2020, In: Biophysical Journal. 118, 3, Suppl. 1, p. 12A 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  29. Published

    Bacteriophages: Emerging Applications in Medicine, Food, and Biotechnology

    Sohail, H. A., Coffey, A., Debrowska, K., Meyer, I. M., Middelboe, Mathias, Sohail, M. & Clokie, M. R. J., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 2, p. 75-82 8 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  30. Published

    Context Matters in Disorder Based Protein Communication

    Kragelund, Birthe Brandt, Prestel, Andreas, Wickmann, N., Martins, J., Boomsma, Wouter, Staby, L., Hendus-Altenburger, R. & Skriver, Karen, 2020, In: Biophysical Journal. 118, 3, suppl. 1, p. 491A 2407-Plat.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  31. Published

    Genome wide association study of circulating interleukin 6 levels identifies novel loci

    Ahluwalia, T. S., Armstrong, N. J., Aslibekyan, S., Beekman, M., Cheng, Y., deGeus, E., Delgado, G. E., Marek, D., Kanoni, S., Nolte, I. M., Porcu, E., Seppala, I., Standl, M., Teumer, A., Thalamuthu, A., Trompet, S., Benjamin, E. J., Feitosa, M. F., Homuth, G., Lahti, J. & 30 others, Liu, Y., Timpson, N. J., Visvikis-Siest, S., Voelker, U., Baune, B. T., Boomsma, D., Deary, I. J., Evans, D. M., Ferreira, M. A., Gaunt, T., Gudnason, V., Hamsten, A., Humphries, S. E., Koeing, W., Kumari, M., Lawlor, D. A., Nauck, M., Price, J. F., Sørensen, Thorkild I.A., Stacey, D., Stathopoulou, M. G., Tanaka, T., Wannamethee, S. G., Rotter, J. I., Dehghan, A., Boerwinkle, E., Sneider, H., Psaty, B. M., Prins, B. P. & Alizadeh, B. Z., 2020, In: European Journal of Human Genetics. 28, Supplement 1, p. 307-308 2 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  32. Published

    Optimal Variance Control of the Score-Function Gradient Estimator for Importance Weighted Bounds

    Liévin, V., Dittadi, A., Christensen, Anders & Winther, Ole, 2020, In: Advances in Neural Information Processing Systems. 2020-December, 12 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  33. Published

    Rose replant disease: detailed analyses of plant reactions, root endophytes and rhizosphere microbial communities

    Baumann, A., Yim, B., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Acta Horticulturae. 1283, p. 97-104 8 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  34. Published

    Social relations and self-rated health in a multi-ethnic social housing area undergoing demolition

    Kvorning, M. F., Srivarathan, Abirami, Nygaard, S. & Lund, Rikke, 2020, In: European Journal of Public Health. 30, Supplement 5, p. V369 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  35. Published

    Volatile Organic Compound fluxes in a subarctic peatland and lake

    Seco, Roger, Holst, T., Westergaard-Nielsen, Andreas, Li, Tao, Simin, Tihomir, Jansen, J., Crill, P., Friborg, Thomas, Holst, J., Rinne, J. & Rinnan, Riikka, 2020. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  36. 2019
  37. Published

    PACAP-38 and PACAP(6-38) degranulate rat meningeal mast cells via the orphanMrgB3-receptor

    Pedersen, S. H., la Cour, S. H., Callø, Kirstine, Hauser, Frank, Olesen, Jes, Klærke, Dan Arne & Jansen-Olesen, I., Sep 2019, p. 4-4.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  38. Published

    Structural studies of temperate phage genetic switches

    Varming, A., Rasmussen, K. K., Kilstrup, M., Hammer, K., Ringkjøbing Jensen, M., Ingmer, Hanne & Lo Leggio, Leila, 18 Aug 2019, p. e105-e105. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  39. Published

    Shining light on split fluorescent protein fitness landscapes using peptide array-based deep substitutional scanning

    ANTONESCU, O., Johansson, Kristoffer Enøe & Winther, Jakob R., 30 Jun 2019.

    Research output: Contribution to conference › Poster › Research › peer-review

  40. Published

    A Quantitative Framework for the Thylacine-Canid Comparison: Integrating Development, Morphology, Genomics and Evolutionary History

    Hipsley, Christy Anna, Jun 2019, p. S61-S61. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  41. Published

    A Multi-State Coarse-Grained Simulation Model Captures Conformational Cycling in P-Type ATPases

    Wang, Yong, Saleh, N., Chu, X. & Lindorff-Larsen, Kresten, 2019, In: Biophysical Journal. 116, 3, suppl. 1, p. 300a 1484-Plat.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  42. Published

    A Probabilistic Programming Approach to Protein Structure Superposition

    Sanz Moreta, Lys, Al-Sibahi, A. S., Theobald, D., Bullock, W., Rommes, B. N., Manoukian, Andreas & Hamelryck, Thomas Wim, 2019, 2019 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2019. Baruzzo, G., Daberdaku, S., Di Camillo, B., Furini, S., Giordano, E. D. & Nicosia, G. (eds.). IEEE, 5 p. 8791469

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  43. Published

    A new CO2 microsensor enables us to ‘unlock the doors to a secret chamber’ inside plant tissues

    Pedersen, Ole, Revsbech, N. P., Garcia-Robleo, E., Kotula, L., Winkel, A., Armstrong, W. & Colmer, T. D., 2019, p. 19. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  44. Published

    Anatomical adaptations to gradients in soil water of wild species of Poaceae

    Yamauchi, T., Pedersen, Ole, Nakazono, M. & Tsutsumi, N., 2019, p. 25. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  45. Published

    Evaluation of diverse chickpea lines for anoxia tolerance and investigation of associated physiological traits

    Kotula, L., Nielsen, S. R., Pedersen, Ole & Colmer, T. D., 2019, p. 72. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  46. Published

    Hypoxic floodwaters affect seed dormancy transitions in an Echinochloa crus-galli population from cropped lowlands

    Peralta Ogorek, Lucas León, Striker, G. G. & Mollard, F. P. O., 2019, p. 73. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  47. Published

    In situ quantification of local O2 concentration in 3D bioprinted constructs using luminescent nanoparticles

    Gelinsky, M., Akkineni, A. R., Trampe, Erik, Koren, K., Lode, A., Krujatz, F. & Kühl, Michael, 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, p. 135 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium, Vol. 40).

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  48. Published

    Induction of a barrier to radial oxygen loss in roots of rice by low concentrations of monocarboxylic acids

    Colmer, T., Kotula, L., Malik, A. I., Takahashi, H., Konnerup, D., Nakazono, M. & Pedersen, Ole, 2019, p. 20. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  49. Published

    Kinesins 1 and 3 Cooperate on the Same Vesicle to Transport Exocytotic Carriers

    Serra-Marques, A., Martin, M., Katrukha, E., Grigoriev, I., Liu, Q., Pedersen, Lotte Bang, Kapitein, L. & Akhmanova, A., 2019, In: Biophysical Journal. 116, 3, Suppl. 1, p. 309a 1526-Plat.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  50. Published

    Local hypoxia in the shoot apex is maintained under normoxic growth and acts as an endogenous cue to regulate meristem activity

    Weits, D. A., Pedersen, Ole, Van Dongen, J. T. & Licausi, F., 2019, p. 32. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  51. Published

    Mechanisms of mercury resistance in High Arctic snow and freshwater bacteria

    Kroer, Niels & Maccario, L., 2019.

    Research output: Contribution to conference › Conference abstract for conference › Research

  52. Published

    Physiological and anatomical dissection for snorkeling in rice

    Mori, Y., Yin, Y., Suzui, N., Colmer, T. D., Ashikari, M., Kawachi, N., Pedersen, Ole & Nagai, K., 2019, p. 75. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  53. Published

    Phytotoxicity of hexanoic acid in Pisum sativum: effects on roots and isolated mitochondria

    Zancani, M., Casolo, V., Filippi, A., Pellegrini, Elisa, Gargiulo, S., Nielsen, S. R. & Pedersen, Ole, 2019. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  54. Published

    Surface modification of halloysite nanotubes increases surface area and airway toxicity in mice

    Hougaard, Karin Sørig, Barfod, Kenneth Klingenberg, Bendtsen, K. M., Berthing, T., Koivisto, J., Poulsen, S., Segal, E., Holländer, A., Jensen, K. A. & Vogel, U., 2019, In: Toxicology Letters. 314, Supplement 1, p. S200-S201 2 p., P11-015.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  55. Published

    The short-term plasticity of Hong Kong's Platygyra sp. corals: insight on coral in-situ metabolism and ex-situ manipulations

    Dellisanti, Walter, Tsang, R. H., Ang Jr, P., Wu, J. & Chan, L. L., 2019, 4th Xiamen Symposium on Marine Environmental Sciences (XMAS-IV): The Changing Ocean Environment: From a Multidisciplinary Perspective.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  56. Published

    Zea nicaraguensis, a wild relative of maize, forms a strong barrier to radial oxygen loss in both the main axis and laterals of adventitious roots during waterlogging

    Kurokawa, Y., Hiroki, Y., Nakayama, Y., Watanabe, K., Takahashi, H., Floytrup, A. H., Omori, F., Mano, Y., Colmer, T. D., Pedersen, Ole & Nakazono, M., 2019, p. 70. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

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