Department of Biology

 

 
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  1. 2023
  2. Published

    ClockstaRX: testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

    Research output: Working paper › Preprint › Research

  3. Published

    The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

    Mc Cartney, A. M., Formenti, G., Mouton, A., Panis, D. D., Marins, L. S., Leitão, H. G., Diedericks, G., Kirangwa, J., Morselli, M., Salces-Ortiz, J., Escudero, N., Iannucci, A., Natali, C., Svardal, H., Fernández, R., Pooter, T. D., Joris, G., Strazisar, M., Wood, J., Herron, K. E. & 30 others, Seehausen, O., Watts, P. C., Shaw, F., Davey, R. P., Minotto, A., Fernández, J. M., Böhne, A., Alegria, C., Alioto, T., Alves, P. C., Amorim, I. R., Aury, J., Backstrom, N., Baldrian, P., Baltrunaite, L., Barta, E., Bed’Hom, B., Belser, C., Bergsten, J., Bertrand, L., Bilandžija, H., Binzer-Panchal, M., Bista, I., Blaxter, M., Borges, P. A., Dias, G. B., Bosse, M., Garg, S., Madsen, O. & Stiller, Josefin, 2023, 51 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  4. 2022
  5. Published

    Extensive inheritance of gut microbial communities in a superorganismal termite

    Sinotte, Veronica Marie, Renelies-Hamilton, J., Andreu-Sánchez, S., Vasseur-Cognet, M. & Poulsen, Michael, 30 Aug 2022, Research Square-Preprint, 34 p.

    Research output: Working paper › Preprint › Research

  6. Published

    Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

    Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 p.

    Research output: Working paper › Preprint › Research

  7. Published

    Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development

    Kim, Junil, Rothová, M. M., Liao, Linbu, Rhee, S., Weng, Guangzheng, David, E., Amit, I., Hajkarim, M. C., Brickman, Joshua Mark & Won, K. J., 2022, Cold Spring Harbor Laboratory, 26 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  8. Published

    Plant YTHDF proteins are direct effectors of antiviral immunity against an m6A-containing RNA virus

    Martínez-Pérez, M., Aparicio, F., Arribas Hernandez, Laura, Tankmar, Mathias Due, Rennie, Sarah, Brodersen, Peter & Pallas, V., 2022, 36 p.

    Research output: Working paper › Preprint › Research

  9. Published

    Species-specific traits mediate avian demographic responses under past climate change

    Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2022, bioRxiv, 24 p.

    Research output: Working paper › Preprint › Research

  10. Published

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2022, 30 p.

    Research output: Working paper › Preprint › Research

  11. Published

    Transfer learning reveals sequence determinants of regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Winther, Ole & Andersson, Robin, 2022, bioRxiv, 24 p.

    Research output: Working paper › Preprint › Research

  12. 2021
  13. Published

    A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

    Gabrielaite, M., Torp, M., Rasmussen, M., Andreu-Sánchez, S., Vieira, Filipe Garrett, Pedersen, C., Kinalis, S., Madsen, M., Yde, C., Rønn, O. L., Marvig, R., Østrup, O., Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2021, bioRxiv, 29 p.

    Research output: Working paper › Preprint › Research

  14. Published

    Computational and experimental assessment of backbone templates for computational protein design

    Marin, Frederikke Isa, Johansson, K. E., O'Shea, Charlotte, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, 15 p.

    Research output: Working paper › Preprint › Research

  15. Published

    Explicitly modelling microtopography in permafrost landscapes in a land-surface model (JULES vn5.4_microtopography)

    Smith, N. D., Chadburn, S. E., Burke, E. J., Aas, K. S., Althuizen, I. H. J., Boike, J., Christiansen, C. T., Etzelmüller, B., Friborg, Thomas, Lee, H., Rumbold, H., Turton, R. & Westermann, S., 2021, 43 p.

    Research output: Working paper › Preprint › Research

  16. Published

    Towards the extended barcode concept: Generating DNA reference data through genome skimming of danish plants

    Chua, Physilia, Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bruun, Hans Henrik, Hartvig, Ida, Coissac, E., Boessenkool, S., Alsos, I. G. & Bohmann, Kristine, 2021, 38 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  17. Published

    hyperTRIBER: a flexible R package for the analysis of differential RNA editing

    Rennie, Sarah, Magnusson, D. H. & Andersson, Robin, 2021, 12 p.

    Research output: Working paper › Preprint › Research

  18. 2020
  19. Published

    Wnt-mediated interactions of tumor-initiating cells with a macrophage niche drive skin tumor formation

    Fontenete, S., Christensen, J., Martinez-Silgado, A., Zarzuela, E., Muñoz, J., Megias, D., Castellana, D., Loewe, R. & Perez-Moreno, Mirna, 18 Jul 2020, bioRxiv, 58 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  20. Published

    Simple attributes predict the importance of plants as hosts to the richness of fungi and arthropods

    Bruun, Hans Henrik, Brunbjerg, A. K., Dalby, L., Fløjgaard, C., Frøslev, Tobias Guldberg, Haarder, S., Heilmann-Clausen, Jacob, Høye, T. T., Læssøe, Thomas & Ejrnæs, R., 18 Apr 2020, bioRxiv, 27 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  21. Published

    Half of the world’s tree biodiversity is unprotected and is increasingly threatened by human activities

    Guo, W-Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., Frutos, A. D., Dias, A. S., Giroldo, A. B. & 38 others, Guo, K., Gutiérrez, A. G., Hattingh, W., He, T., Hietz, P., Hough-Snee, N., Jansen, S., Kattge, J., Klein, T., Komac, B., Kraft, N., Kramer, K., Lavorel, S., Lusk, C. H., Martin, A. R., Mencuccini, M., Michaletz, S. T., Minden, V., Mori, A. S., Niinemets, Ü., Onoda, Y., Onstein, R. E., Peñuelas, J., Pillar, V. D., Pisek, J., Robroek, B. J. M., Schamp, B., Slot, M., Sosinski, Ê., Soudzilovskaia, N. A., Thiffault , N., van Bodegom, P., Van Der Plas, F., Wright, I. J., Xu , W., Zheng , J., Enquist, B. J. & Svenning, J., 2020, 42 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  22. 2018
  23. Published

    Binning microbial genomes using deep learning

    Nissen, J. N., Sønderby, C. K., Armenteros, J. J. A., Grønbech, Christopher Heje, Nielsen, H. B., Petersen, T. N., Winther, Ole & Rasmussen, Simon, 2018, (bioRxiv).

    Research output: Working paper › Preprint › Research

  24. Published

    The GBAF chromatin remodeling complex binds H3K27ac and mediates enhancer transcription

    Jefimov, K., Alcaraz, N., Kloet, S. L., Värv, S., Sakya, S. A., Vaagenso, C., Vermeulen, M., Aasland, R. & Andersson, Robin, 2018, 31 p.

    Research output: Working paper › Preprint › Research

  25. Published

    The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids

    Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 p.

    Research output: Working paper › Preprint › Research

  26. 2017
  27. Published

    Plasmids, viruses, and other circular elements in rat gut

    Jørgensen, T. S., Hansen, M. A., Xu, Z., Tabak, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2017, Cold Spring Harbor Laboratory Press, 30 p.

    Research output: Working paper › Research

  28. 2012
  29. Published

    Bevarelse af biodiversiteten i Danmark: En analyse af indsats og omkostninger

    Petersen, A. H., Strange, Niels, Anthon, S., Bjørner, T. B. & Rahbek, Carsten, 2012, De Økonomiske Råd, 120 p.

    Research output: Working paper › Research

  30. 2008
  31. Published

    Anbragte børn i Danmark: en deskriptiv analyse

    Ejrnæs, Mette, Ejrnæs, N. M. & Frederiksen, S. E., 2008, Institut for Sociologi, Socialt Arbejde og Organisation, Aalborg Universitet, 81 p.

    Research output: Working paper › Research

  32. 2004
  33. Published

    Outline of proposals for further behavioural welfare research on fur farmed animals, drawn up by the ethology group of the Subsection for Fur Animals under the Nordic Association of Agricultural Scientists

    Jeppesen, L. L., Hovland, A. L., Lidfors, L., Korhonen, H. & Gunnarsson, E., 2004, http://composit.dimea.se/filebank/files/20050322$100703$fil$01czhWL8YJKrrerNcgVJ.pdf, p. 16.

    Research output: Working paper › Research