- Published
A combined algorithm for automated drainage network extraction from digital elevation models
Yan, Y., Tang, Jing & Pilesjo, P., 2018, In: Hydrological Processes. 32, 10, p. 1322-1333 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diverse Aquatic Animal Matrices Play a Key Role in Survival and Potential Virulence of Non-O1/O139 Vibrio cholerae Isolates
Yan, L., Jin, Y., Zhang, B., Xu, Y., Peng, Xu, Qin, S. & Chen, L., 2022, In: Frontiers in Microbiology. 13, 21 p., 896767.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques
Yan, G., Zhang, G., Fang, X., Zhang, Y., Li, C., Ling, F., Cooper, D. N., Li, Q., Li, Y., van Gool, A. J., Du, H., Chen, J., Chen, R., Zhang, P., Huang, Z., Thompson, J. R., Meng, Y., Bai, Y., Wang, J., Zhuo, M. & 26 others, , 2011, In: Nature Biotechnology. 29, 11, p. 1019-1023 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Anatomical adaptations to gradients in soil water of wild species of Poaceae
Yamauchi, T., Pedersen, Ole, Nakazono, M. & Tsutsumi, N., 2019, p. 25. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress
Yamauchi, T., Colmer, T. D., Pedersen, Ole & Nakazono, M., 2018, In: Plant Physiology. 176, 2, p. 1118-1130Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Key root traits of Poaceae for adaptation to soil water gradients
Yamauchi, T., Pedersen, Ole, Nakazono, M. & Tsutsumi, N., 2021, In: New Phytologist. 229, 6, p. 3133-3140Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular mechanisms that underlie the root cortex expansion in response to low oxygen
Yamauchi, T., Sumi, K., Morishita, H., Pedersen, Ole, Inukai, Y. & Nakazono, M., 2022, p. 22.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Neuroendocrine control of Drosophila larval light preference
Yamanaka, N., Romero, N. M., Martin, F. A., Rewitz, Kim, Sun, M., O´Connor, M. B. & Léopold, P., 2013, In: Science. 341, 6150, p. 1113-1116 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of sex determination and sexually dimorphic larval sizes in parasitic barnacles
Yamaguchi, S., Høeg, Jens Thorvald & Iwasa, Y., 2014, In: Journal of Theoretical Biology. 347, p. 7-16 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ASPIRE: The Amundsen Sea Polynya International Research Expedition
Yager, P. L., Sherrell, R. M., Stammerjohn, S. E., Alderkamp, A., Schofield, O., Abrahamsen, E. P., Arrigo, K. R., Bertilsson, S., Garay, D. L., Guerrero, R., Lowry, K. E., Moksnes, P., Ndungu, K., Post, A. F., Randall-Goodwin, E., Riemann, Lasse, Severmann, S., Thatje, S., Dijken, G. L. V. & Wilson, S., 2012, In: Oceanography. 25, 3, p. 40-53 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A carbon budget for the Amundsen Sea Polynya, Antarctica: estimating net community production and export in a highly productive polar ecosystem
Yager, P. L., Sherrell, R. M., Stammerjohn, S. E., Ducklow, H. W., Schofield, O. M. E., Ingall, E. D., Wilson, S. E., Lowry, K. E., Williams, C. M., Riemann, L., Bertilsson, S., Alderkamp, A-C., Dinasquet, J. V., Logares, R., Richert, I., Sipler, R. E., Melara, A. J., Mu, L., Newstead, R. G., Post, A. F. & 2 others, , 2016, In: Elementa : Science of the Anthropocene. 4, 36 p., 000140.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Life cycles of the rhizocephalan Boschmaella japonica Deichmann & Høeg, 1990 (Cirripedia: Chthamalophilidae) and its host barnacle Chthamalus challengeri Hoek, 1883 (Cirripedia: Chthamalidae)
Yabuta, M., Høeg, Jens Thorvald, Yamato, S. & Yusa, Y., 2020, In: Journal of Crustacean Biology. 40, 6, p. 825-832 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding
Xue, Y., Prado-Martinez, J., Sudmant, P. H., Narasimhan, V., Ayub, Q., Szpak, M., Frandsen, P., Chen, Y., Yngvadottir, B., Cooper, D. N., de Manuel, M., Hernandez-Rodriguez, J., Lobon, I., Siegismund, H. R., Pagani, L., Quail, M. A., Hvilsom, C., Mudakikwa, A., Eichler, E. E., Cranfield, M. R. & 3 others, , 2015, In: Science (New York, N.Y.). 348, 6231, p. 242-245 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation
Xue, J., Zhou, X., Zhang, C-X., Yu, L-L., Fan, H-W., Wang, Z., Xu, H-J., Xi, Y., Zhu, Z-R., Zhou, W-W., Pan, P-L., Li, B-L., Colbourne, J. K., Noda, H., Suetsugu, Y., Kobayashi, T., Zheng, Y., Liu, S., Zhang, R., Liu, Y. & 21 others, , 2014, In: Genome Biology (Online Edition). 15, 12, 19 p., 521.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide detection of selection and other evolutionary forces
Xu, Z. & Zhou, R., 2015, Bacterial pangenomics: methods and protocols. Mengoni, A., Galardini, M. & Fondi, M. (eds.). Springer, p. 271-287 17 p. (Methods in Molecular Biology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Bioinformatic approaches reveal metagenomic characterization of soil microbial community
Xu, Z., Hansen, M. A., Hansen, Lars Hestbjerg, Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2014, In: P L o S One. 9, 4, 11 p., e93445.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Culture-dependent and -independent investigations of microbial diversity on urinary catheters
Xu, Y., Moser, Claus Ernst, Abu Al-Soud, W., Sørensen, Søren Johannes, Høiby, Niels, Nielsen, P. H. & Thomsen, T. R., 2012, In: Journal of Clinical Microbiology. 50, 12, p. 3901-3908 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Embryo genome profiling by single-cell sequencing for preimplantation genetic diagnosis in a β-thalassemia family
Xu, Y., Chen, S., Yin, X., Shen, X., Pan, X., Chen, F., Jiang, H., Liang, Y., Wang, W., Xu, X., Wang, J., Zhang, X., Zhou, C. & Wang, J., 2015, In: Clinical Chemistry. 61, 4, p. 617-626 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four-decade dynamics of the water color in 61 large lakes on the Yangtze Plain and the impacts of reclaimed aquaculture zones
Xu, Yang, Feng, L., Hou, X., Wang, J. & Tang, Jing, 2021, In: Science of the Total Environment. 781, 14 p., 146688.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular evidence for origin, diversification and ancient gene duplication of plant subtilases (SBTs)
Xu, Y., Wang, S., Li, L., Sahu, S. K., Petersen, Morten, Liu, X., Melkonian, M., Zhang, G. & Liu, Huan, 2019, In: Scientific Reports. 9, 10 p., 12485.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Haplotype-based approach for noninvasive prenatal tests of Duchenne muscular dystrophy using cell-free fetal DNA in maternal plasma
Xu, Y., Li, X., Ge, H-J., Xiao, B., Zhang, Y-Y., Ying, X-M., Pan, X-Y., Wang, L., Xie, W-W., Ni, L., Chen, S-P., Jiang, W-T., Liu, P., Ye, H., Cao, Y., Zhang, J-M., Liu, Y., Yang, Z-J., Chen, Y-W., Chen, F. & 2 others, , 2015, In: Genetics In Medicine. 17, 11, p. 889-896 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Draft Genome of Hariotina reticulata (Sphaeropleales, Chlorophyta) Provides Insight into the Evolution of Scenedesmaceae
Xu, Y., Li, L., Liang, H., Melkonian, B., Lorenz, M., Friedl, T., Petersen, Morten, Liu, Huan, Melkonian, M. & Wang, S., 2019, In: Protist. 170, 6, 6 p., 125684.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
Xu, X., Liu, X., Ge, S., Jensen, J. D., Hu, F., Li, X., Dong, Y., Gutenkunst, R. N., Fang, L., Huang, L., Li, J., He, W., Zhang, G., Zheng, X., Zhang, F., Li, Y., Yu, C., Kristiansen, K., Zhang, X., Wang, J. & 5 others, , 2012, In: Nature Biotechnology. 30, 1, p. 105-111 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genomic sequence of the chinese hamster ovary (CHO)-K1 cell line
Xu, X., Nagarajan, H., Lewis, N. E., Pan, S., Cai, Z., Liu, X., Chen, W., Xie, M., Wang, W., Hammond, S., Andersen, M. R., Neff, N., Passarelli, B., Koh, W., Fan, H. C., Wang, J., Gui, Y., Lee, K. H., Betenbaugh, M., Quake, S. R. & 3 others, , 2011, In: Nature Biotechnology. 29, 8, p. 735-741 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor: Cell
Xu, X., Hou, Y., Yin, X., Bao, L., Tang, A., Song, L., Li, F., Tsang, S., Wu, K., Wu, H., He, W., Zeng, L., Xing, M., Wu, R., Jiang, H., Liu, X., Cao, D., Guo, G., Hu, X., Gui, Y. & 19 others, , 2012, In: Cell. 148, 5, p. 886-895 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary history influences the effects of water-energy dynamics on oak diversity in Asia
Xu, X., Wang, Z., Rahbek, Carsten, Lessard, J. & Fang, J., 2013, In: Journal of Biogeography. 40, 11, p. 2146-2155 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global beta-diversity of angiosperm trees is shaped by Quaternary climate change
Xu, W. B., Guo, W. Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Enquist, B. J., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., de Frutos, A. & 39 others, , 2023, In: Science Advances. 9, 14, 19 p., eadd8553.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deepened snow in combination with summer warming increases growing season nitrous oxide emissions in dry tundra, but not in wet tundra
Xu, W., Frendrup, L. L., Michelsen, Anders, Elberling, Bo & Ambus, Per Lennart, 2023, In: Soil Biology and Biochemistry. 180, 12 p., 109013.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deepened snow enhances gross nitrogen cycling among Pan-Arctic tundra soils during both winter and summer
Xu, W., Priemé, Anders, Cooper, E. J., Mörsdorf, M. A., Semenchuk, P., Elberling, Bo, Grogan, P. & Ambus, Per Lennart, 1 Sep 2021, In: Soil Biology and Biochemistry. 160, 13 p., 108356.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data
Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., Xu, Y. C., Liu, Huan, Kristiansen, Karsten, Lan, T. & Zhou, X., 2021, In: Ecology and Evolution. 11, 1, p. 390-401 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two novel truncating variants of the ASPM gene identified in a nonconsanguineous Chinese family associated with primary microcephaly
Xu, S., Zhang, W., Zhou, R., Huang, H., Chen, W., Xiang, W., Liu, L. & Song, J., 2022, In: Clinical Dysmorphology. 31, 1, p. 1-5 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Discovery of Anti-defense Genes in Archaea
Xu, Shuanshuan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Association analysis of the MHC in Lupus nephritis
Xu, R., Li, Q., Liu, R., Shen, J., Li, M., Zhao, M., Wang, M., Liao, Q., Mao, H., Li, Z., Zhou, N., Yin, P., Li, Y., Tang, X., Wu, T., Zhong, Z., Wang, Y., Ai, Z., Wang, O., Chen, N. & 23 others, , Nov 2017, In: Journal of the American Society of Nephrology. 28, 11, p. 3383-3394 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds
Xu, L., Auer, G., Peona, V., Suh, A., Deng, Y., Feng, S., KU, thw266, Blom, M. P. K., Christidis, L., Prost, S., Irestedt, M. & Zhou, Q., 2019, In: Nature Ecology and Evolution. 3, 5, p. 834-844 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and microbial factors affect the prognosis of anti-pd-1 immunotherapy in nasopharyngeal carcinoma
Xu, L., Ma, Y., Fang, Chao, Peng, Z., Gao, F., Moll, J. M., Qin, S., Yu, Q., Hou, Y., Kristiansen, Karsten, Fang, W., Brix, S. & Zhang, L., 2022, In: Frontiers in Oncology. 12, 11 p., 953884.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct nutritional and endocrine regulation of prothoracic gland activities underlies divergent life history strategies in Manduca sexta and Drosophila melanogaster
Xu, L. C., Nunes, C., Wang, V. R., Saito, A., Chen, T., Basak, P., Chang, J. J., Koyama, Takashi & Suzuki, Y., 2020, In: Insect Biochemistry and Molecular Biology. 119, 13 p., 103335.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinctly different behavioral responses of a copepod, Temora longicornis, to different strains of toxic dinoflagellates, Alexandrium spp.
Xu, J., Hansen, Per Juel, Nielsen, L. T., Krock, B., Tillmann, U. & Kiørboe, T., Feb 2017, In: Harmful Algae. 62, p. 1-9 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptomic Profile of the Mouse Postnatal Liver Development by Single-Nucleus RNA Sequencing
Xu, J., Hao, S., Shi, Q., Deng, Q., Jiang, Y., Guo, P., Yuan, Y., Shi, X., Shangguan, S., Zheng, H., Lai, G., Huang, Y., Wang, Y., Song, Y., Liu, Y., Wu, L., Wang, Z., Cheng, J., Wei, X., Cheng, M. & 6 others, , 2022, In: Frontiers in Cell and Developmental Biology. 10, 11 p., 833392.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A spatiotemporal atlas of mouse liver homeostasis and regeneration
Xu, J., Guo, P., Hao, S., Shangguan, S., Shi, Q., Volpe, G., Huang, K., Zuo, J., An, J., Yuan, Y., Cheng, M., Deng, Q., Zhang, X., Lai, G., Nan, H., Wu, B., Shentu, X., Wu, L., Wei, X., Jiang, Y. & 38 others, , 2024, In: Nature Genetics. 56, p. 953-969 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals
Xu, H., Zhen, Q., Bai, M., Fang, L., Zhang, Y., Li, B., Ge, H., Moon, S., Chen, W., Fu, W., Xu, Q., Zhou, Y., Yu, Y., Lin, L., Yong, L., Zhang, T., Chen, S., Liu, S., Zhang, H., Chen, R. & 8 others, , 2021, In: Genome Research. 31, 7, p. 1150-1158 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mucosal vaccination with heterologous viral vectored vaccine targeting subdominant SIV accessory antigens strongly inhibits early viral replication
Xu, H., Andersson, A. C., Ragonnaud, Emeline, Boilesen, D., Tolver, Anders, Jensen, Benjamin Anderschou Holbech, Blanchard, J. L., Nicosia, A., Folgori, A., Colloca, S., Cortese, R., Thomsen, Allan Randrup, Christensen, Jan Pravsgaard, Veazey, R. S. & Holst, Peter Johannes, Apr 2017, In: EBioMedicine. 18, p. 204–215 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Application of Next-generation Sequencing Technology in Reproductive/Developmental Sciences and Diagnostics
Xu, F., 2018, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Survival and Genome Diversity of Vibrio parahaemolyticus Isolated from Edible Aquatic Animals
Xu, D., Peng, Xu, Xie, L. & Chen, L., 2022, In: Diversity. 14, 5, 23 p., 350.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel tRNA Gene Rearrangements in the Mitochondrial Genomes of Poneroid Ants and Phylogenetic Implication of Paraponerinae (Hymenoptera: Formicidae)
Xiong, Z., He, Ding, Guang, X. & Li, Q., 2023, In: Life. 13, 10, 17 p., 2068.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome of the leopard gecko, Eublepharis macularius
Xiong, Z., Li, F., Li, Q., Zhou, L., Gamble, T., Zheng, J., Kui, L., Li, C., Li, S., Yang, H. & KU, thw266, 2016, In: GigaScience. 5, 6 p., 47.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An esophageal squamous cell carcinoma classification system that reveals potential targets for therapy
Xiong, T., Wang, M., Zhao, J., Liu, Q., Yang, C., Luo, W., Li, X., Yang, H., Kristiansen, Karsten, Roy, B. & Zhou, Y., 25 Jul 2017, In: OncoTarget. 8, 30, p. 49851-49860 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chord: an ensemble machine learning algorithm to identify doublets in single-cell RNA sequencing data
Xiong, K., Zhou, H., Lin, C., Yin, J., Kristiansen, Karsten, Yang, H. & Li, G., 2022, In: Communications Biology . 5, 11 p., 510.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RED-ML: a novel, effective RNA editing detection method based on machine learning
Xiong, H., Liu, D., Li, Q., Lei, M., Xu, L., Wu, L., Wang, Z., Ren, S., Li, W., Xia, M., Lu, L., Lu, H., Hou, Y., Zhu, S., Liu, X., Sun, Y., Wang, J., Yang, H., Wu, K., Xu, X. & 1 others, , May 2017, In: GigaScience. 6, 5, p. 1-8 8 p., gix012.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Sulfolobus Replication Factor C stimulates the activity of DNA Polymerase B1
Xing, X., Zhang, L., Guo, L., She, Q. & Huang, L., 2014, In: Journal of Bacteriology. 196, 13, p. 2367-2375 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Xie, Y., Wu, G., Tang, J., Luo, R., Patterson, J., Liu, S., Huang, W., He, G., Gu, S., Li, S., Zhou, X., Lam, T., Li, Y., Xu, X., Wong, G. K. & Wang, J., 2014, In: Bioinformatics. 30, 12, p. 1660-1666 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Noninvasive prenatal paternity testing by maternal plasma DNA sequencing in twin pregnancies
Xie, Y., Qu, N., Lin, S., Jiang, H., Zhang, Y., Zhang, X., Liang, H., Chen, F. & Ou, X., 2020, In: Electrophoresis. 41, 12, p. 1095-1102Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial chromatin accessibility sequencing resolves high-order spatial interactions of epigenomic markers
Xie, Y., Ruan, F., Li, Y., Luo, M., Zhang, C., Chen, Z., Xie, Z., Weng, Z., Chen, W., Chen, W., Fang, Y., Sun, Y., Guo, M., Wang, J., Xu, S., Wang, H. & Tang, C., 2024, In: eLife. 12, 20 p., RP87868.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Shotgun metagenomics of 250 adult twins reveals genetic and environmental impacts on the gut microbiome
Xie, H., Guo, R., Zhong, H., Feng, Q., Lan, Z., Qin, B., Ward, K. J., Jackson, M. A., Xia, Y., Chen, X., Chen, B., Xia, H., Xu, C., Li, F., Xu, X., Al-Aama, J. Y., Yang, H., Wang, J., Kristiansen, K., Wang, J. & 5 others, , 2016, In: Cell Systems. 3, 6, p. 572-584.e3 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
Xie, F., Jin, W., Si, H., Yuan, Y., Tao, Y., Liu, J., Wang, X., Yang, C., Li, Q., Yan, X., Lin, L., Jiang, Q., Zhang, L., Guo, C., Greening, C., Heller, R., Guan, L. L., Pope, P. B., Tan, Z., Zhu, W. & 4 others, , 2021, In: Microbiome. 9, 20 p., 137.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ERK and USP5 govern PD-1 homeostasis via deubiquitination to modulate tumor immunotherapy
Xiao, X., Shi, J., He, C., Bu, X., Sun, Y., Gao, M., Xiang, B., Xiong, W., Dai, P., Mao, Q., Xing, X., Yao, Y., Yu, H., Xu, G., Li, S., Ren, Y., Chen, B., Jiang, C., Meng, G., Lee, Y. R. & 4 others, , 2023, In: Nature Communications. 14, 1, 19 p., 2859.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice
Xiao, L., Sonne, S. B., Feng, Q., Chen, N., Xia, Z., Li, X., Fang, Z., Zhang, D., Fjære, E., Midtbø, L. K., Derrien, M., Hugenholtz, F., Tang, L., Li, J., Zhang, J., Liu, C., Hao, Q., Vogel, U. B., Mortensen, A., Kleerebezem, M. & 8 others, , 8 Apr 2017, In: Microbiome. 5, 12 p., 43.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A catalog of the mouse gut metagenome: [incl. Author Correction]
Xiao, L., Feng, Q., Liang, S., Sonne, S. B., Xia, Z., Qiu, X., Li, X., Long, H., Zhang, J., Zhang, D., Liu, C., Fang, Z., Chou, J., Glanville, J., Hao, Q., Kotowska, D. E., Colding, C. S., Licht, T. R., Wu, D., Yu, J. & 17 others, , 2015, In: Nature Biotechnology. 33, 10, p. 1103-1108 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A reference gene catalogue of the pig gut microbiome
Xiao, L., Estellé, J., Kiilerich, P., Ramayo-Caldas, Y., Xia, Z., Feng, Q., Liang, S., Pedersen, A. Ø., Kjeldsen, N. J., Liu, C., Maguin, E., Doré, J., Pons, N., Le Chatelier, E., Prifti, E., Li, J., Jia, H., Liu, X., Xu, X., Ehrlich, S. D. & 4 others, , 2016, In: Nature Microbiology. 1, 6 p., 16161.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Identification of a disease-causing mutation in a Chinese patient with retinitis pigmentosa by targeted next-generation sequencing
Xiao, J., Guo, X., Wang, Y., Shao, M., Wei, X., Du, L., Li, L., Sun, Y. & Yang, Y., 8 Nov 2017, In: European Journal of Ophthalmology. 27, 6, p. 791-796 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Hypoxia in tomato (Solanum lycopersicum) fruit during ripening: Biophysical elucidation by a 3D reaction–diffusion model
Xiao, H., Verboven, P., Tong, Shuai, Pedersen, Ole & Nicolaï, B., 2024, (E-pub ahead of print) In: Plant Physiology.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hypoxia in tomato fruit during ripening caused by contrasting tissue-specific diffusion resistance and respiration
Xiao, H., Tong, Shuai, Salagovic, J., Pedersen, Ole, Verboven, P. & Nicolaï, B. M., 2022, p. 48.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Integrative analysis of genomic sequencing data reveals higher prevalence of LRP1B mutations in lung adenocarcinoma patients with COPD
Xiao, D., Li, F., Pan, H., Liang, H., Wu, K. & He, J., 18 May 2017, In: Scientific Reports. 7, 8 p., 2121.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning
Xiang, X., Corsi, G. I., Anthon, C., Qu, K., Pan, X., Liang, X., Han, P., Dong, Z., Liu, L., Zhong, J., Ma, T., Wang, J., Zhang, X., Jiang, H., Xu, F., Liu, X., Xu, X., Wang, J., Yang, H., Bolund, L. & 4 others, , 2021, In: Nature Communications. 12, 1, 9 p., 3238.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and functional analysis of circulating extrachromosomal circular DNA in schizophrenia implicate its negative effect on the disorder
Xiang, X., Pan, Xiaoguang, Lv, W., Chen, S., Li, J., Zhang, H., Liao, Y., Yu, J., Li, J., Dang, Y., You, Z., Wang, L., Chen, W., Han, Peng & Tang, J., 2023, In: Clinical and Translational Medicine. 13, 11, 7 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Single base-resolution methylome of the silkworm reveals a sparse epigenomic map
Xiang, H., Zhu, J., Chen, Q., Dai, F., Li, X., Li, M., Zhang, H., Zhang, G., Li, D., Dong, Y., Zhao, L., Lin, Y., Cheng, D., Yu, J., Sun, J., Zhou, X., Ma, K., He, Y., Zhao, Y., Guo, S. & 13 others, , 2010, In: Nature Biotechnology. 28, 5, p. 516-20 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global dispersal and adaptive evolution of domestic cattle: a genomic perspective
Xia, X., Qu, K., Wang, Y., Sinding, Mikkel Holger Strander, Wang, F., Hanif, Q., Ahmed, Z., Lenstra, J. A., Han, J., Lei, C. & Chen, N., 2023, In: Stress Biology. 3, 1, 13 p., 8.Research output: Contribution to journal › Review › Research › peer-review
- Published
Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx)
Xia, Q., Guo, Y., Zhang, Z., Li, D., Xuan, Z., Li, Z., Dai, F., Li, Y., Cheng, D., Li, R., Cheng, T., Jiang, T., Becquet, C., Xu, X., Liu, C., Zha, X., Fan, W., Lin, Y., Shen, Y., Jiang, L. & 38 others, , 2009, In: Science. 326, 5951, p. 433-6 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ursolic acid induces cell death and modulates autophagy through JNK pathway in apoptosis-resistant colorectal cancer cells
Xavier, C. P. R., Lima, C. F., Pedro, D. F. N., Wilson, J. M., Kristiansen, Karsten & Pereira-Wilson, C., 2013, In: Journal of Nutritional Biochemistry. 24, 4, p. 706-712 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel Sequencing Approaches for the High-Throughput Identification of Full-length Poly(A) RNA Transcripts at the Single-cell Level
XIE, Z., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 88 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits
Würth, D. G., Dahl, M. B., Trouillier, M., Wilmking, M., Unterseher, M., Scholler, M., Sørensen, Søren Johannes, Mortensen, M. & Schnittler, M., 2019, In: Fungal Ecology. 41, p. 177-186 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic structure of fragmented November moth (Lepidoptera: Geometridae) populations in farmland
Wynne, I. R., Loxdale, H. D., Brookes, C. P. & Woiwod, I. P., 2003, In: Biological Journal of the Linnean Society. Vol. 78, Issue 4, p. 467-477Research output: Contribution to journal › Journal article › Research › peer-review
- Published
When less is more: shortening the Lpp protein leads to increased vancomycin resistance in Escherichia coli
Wykes, H., Le, Van Hung Vuong, Olivera, Catrina Diane Peralta & Rakonjac, J., 2023, In: Journal of Antibiotics. 76, p. 746-750 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Purification and sequence determination of a yellow protein from sexually mature males of the desert locust, Schistocerca gregaria
Wybrandt, G. B. & Andersen, S. O., 2001, In: Insect Biochemistry and Molecular Biology. 31, p. 1183-1189Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cuticle-catalyzed coupling between polyamino acids and N-acetyldopamine
Wybrandt, G. B. & Andersen, S. O., 1994, In: BBA General Subjects. 1201, p. 15-18Research output: Contribution to journal › Journal article › Research
- Published
Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease
Wyatt, K. B., Campos, P. F., Gilbert, M Thomas P, Kolokotronis, S., Hynes, W. H., DeSalle, R., Daszak, P., MacPhee, R. D. E. & Greenwood, A. D., 2008, In: PLoS ONE. 3, 11, p. e3602Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Histone H3 lysine 56 acetylation and the response to DNA replication fork damage
Wurtele, H., Kaiser, G. S., Bacal, J., St-Hilaire, E., Lee, E., Tsao, S., Dorn, J., Maddox, P., Lisby, Michael, Pasero, P. & Verreault, A., 2012, In: Molecular and Cellular Biology. 32, 1, p. 154-172 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of the fire ant Solenopsis invicta
Wurm, Y., Wang, J., Riba-Grognuz, O., Corona, M., Nygaard, S., Hunt, B. G., Ingram, K. K., Falquet, L., Nipitwattanaphon, M., Gotzek, D., Dijkstra, M. B., Oettler, J., Comtesse, F., Shih, C-J., Wu, W-J., Yang, C-C., Thomas, J., Beaudoing, E., Pradervand, S., Flegel, V. & 18 others, , 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 14, p. 5679-84 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Co-expression of mCysLT1 receptors and IK channels in Xenopus laevis oocytes elicits LTD4-stimulated IK current, independent of an increase in [Ca2+]i.
Wulff, T., Hougaard, C., Klærke, Dan Arne & Hoffmann, E. K., 2004, In: BBA General Subjects. 1660, 1-2, p. 75-9 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
mCysLT1 receptor mediated activation of various K+ channels by co-expression in Xenopus laevis oocytes
Wulff, T., Hougaard, C., Klærke, D. A. & Hoffmann, E. K., 2004, In: Acta Physiologica (Print Edition). A45-A163, p. A139Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Investigation of two different anoxia models by 2-dimensional gel electrophoresis
Wulff, T., Jessen, F. & Hoffmann, E. K., 2006, In: The FASEB Journal. 5, p. A1433Research output: Contribution to journal › Conference abstract in journal › Research
- Published
A comparison of two anoxia models by 2-DE and MS/MS
Wulff, T., 2008, Department of Biology: Museum Tusculanum. 198 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Comparison of two anoxia models in rainbow trout cells by a 2-DE and MS/MS-based proteome approach.
Wulff, T., Hoffmann, E. K., Roepstorff, P. & Jessen, F., 2008, In: Proteomics. 8, 10, p. 2035-44 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activation of certain K+ channels by the eicosanoid leukotrine D4 (LTD4)
Wulff, T., Hougaard, C., Klaerke, D. A. & Hoffmann, E. K., 2003, In: Molecular Biology of the Cell. p. 222aResearch output: Contribution to journal › Journal article › Research › peer-review
- Published
Long term anoxia in rainbow trout investigated by 2-DE and MS/MS.
Wulff, T., Jessen, F., Roepstorff, P. & Hoffmann, E. K., 2008, In: Proteomics. p. 1009 - 1018Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ocean acidification and desalination: climate-driven change in a Baltic Sea summer microplanktonic community
Wulff, A., Karlberg, M., Olofsson, M., Torstensson, A., Riemann, Lasse, Steinhoff, F. S., Mohlin, M., Ekstrand, N. & Chierici, M., 1 Apr 2018, In: Marine Biology. 165, 4, 15 p., 63.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Next Generation Sequencing Library Preparation Technologies and Applications
Wu, Zongze, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 143 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Nanopore-based long-read metagenomics uncover the resistome intrusion by antibiotic resistant bacteria from treated wastewater in receiving water body
Wu, Bruce, Che, Y., Dang, C., Zhang, M., Zhang, X., Sun, Y., Li, X., Zhang, T. & Xia, Y., 2022, In: Water Research. 226, 10 p., 119282.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Atmospheric brightening counteracts warming-induced delays in autumn phenology of temperate trees in Europe
Wu, Z., Chen, S., De Boeck, H. J., Stenseth, N. C., Tang, Jing, Vitasse, Y., Wang, S., Zohner, C. & Fu, Y. H., 2021, In: Global Ecology and Biogeography. 30, 12, p. 2477-2487 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The sensitivity of ginkgo leaf unfolding to the temperature and photoperiod decreases with increasing elevation
Wu, Z., Lin, C., Wang, S., Gong, Y., Fu, Y. H., Tang, Jing, De Boeck, H. J., Vitasse, Y. & Zhao, Y., 2022, In: Agricultural and Forest Meteorology. 315, 8 p., 108840.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cooperative microbial interactions drive spatial segregation in porous environments
Wu, Y., Fu, C., Peacock, C. L., Sørensen, Søren Johannes, Redmile-Gordon, M. A., Xiao, K. Q., Gao, C., Liu, J., Huang, Q., Li, Z., Song, P., Zhu, Y., Zhou, J. & Cai, P., 2023, In: Nature Communications. 14, 1, 14 p., 4226.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tumor suppressor ASXL1 is essential for the activation of INK4B expression in response to oncogene activity and anti-proliferative signals
Wu, X., Bekker-Jensen, I. H., Christensen, J., Rasmussen, K. D., Sidoli, S., Qi, Y., Kong, Y., Wang, X., Cui, Y., Xiao, Z., Xu, G., Williams, K., Rappsilber, J., Sønderby, C. K., Winther, Ole, Jensen, O. N. & Helin, K., 2015, In: Cell Research. 25, p. 1205-1218 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fbxl10/Kdm2b recruits polycomb repressive complex 1 to CpG islands and regulates H2A ubiquitylation
Wu, X., Johansen, Jens Vilstrup & Helin, K., 28 Mar 2013, In: Molecular Cell. 49, 6, p. 1134-46 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysis
Wu, S., Nguyen, T. T. T. N., Moroz, O. V., Turkenburg, J. P., Nielsen, J. E., Wilson, K. S., Rand, Kasper Dyrberg & Teilum, Kaare, 2020, In: PeerJ. 8, 17 p., e9408.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic Properties of Savinase by Integrative Structural Biology — Indications to Structural Stability
Wu, S., 2017, Department of Biology, Faculty of Science, University of Copenhagen. 253 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant
Wu, P., Zhou, C., Cheng, S., Wu, Z., Lu, W., Han, J., Chen, Y., Chen, Y., Ni, P., Wang, Y., Xu, X., Huang, Y., Song, C., Wang, Z., Shi, N., Zhang, X., Fang, X., Yang, Q., Jiang, H., Chen, Y. & 5 others, , 2015, In: Plant Journal. 81, 5, p. 810-821 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The RNA exosome shapes the expression of key protein-coding genes
Wu, M., Karadoulama, Evdoxia, Lloret-llinares, M., Rouviere, J. O., Vaagensø, C. S., Moravec, M., Li, B., Wang, J., Wu, G., Gockert, M. A. M., Pelechano, V., Jensen, T. H. & Sandelin, Albin Gustav, 2020, In: Nucleic Acids Research. 48, 15, p. 8509-8528Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of the Impact of the RNA Exosome on Cellular Transcriptome and Function
Wu, M., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 154 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Computational identification of signals predictive for nuclear RNA exosome degradation pathway targeting
Wu, M., Schmid, M., Jensen, T. H. & Sandelin, Albin Gustav, 2022, In: NAR Genomics and Bioinformatics. 4, 3, 18 p., lqac071.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interaction of extremophilic archaeal viruses with human and mouse complement system and viral biodistribution in mice
Wu, L., Uldahl, K. B., Chen, F., Benasutti, H., Logvinski, D., Vu, V., Banda, N. K., Peng, Xu, Simberg, D. & Moghimi, S. M., Oct 2017, In: Molecular Immunology. 90, p. 273-279 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells
Wu, L., Zhang, X., Zhao, Z., Wang, L., Li, B., Li, G., Dean, M., Yu, Q., Wang, Y., Lin, X., Rao, W., Mei, Z., Li, Y., Jiang, R., Yang, H., Li, F., Xie, G., Xu, L., Wu, K., Zhang, J. & 9 others, , 2015, In: GigaScience. 4, 17 p., 51.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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