Department of Biology

 

 
  1. Published

    miR-449 inhibits cell proliferation and is down-regulated in gastric cancer

    Bou Kheir, T., Futoma-Kazmierczak, E., Jacobsen, A., Krogh, Anders, Bardram, L., Hother, C., Grønbæk, Kirsten, Federspiel, B., Lund, Anders H. & Friis-Hansen, Lennart Jan, 2011, In: Molecular Cancer. 10, p. 1-12 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer

    Pan, Y., Robertson, G., Pedersen, L., Lim, E., Hernandez-Herrera, A., Rowat, A. C., Patil, S. L., Chan, C. K., Wen, Y., Zhang, X., Basu-Roy, U., Mansukhani, A., Chu, A., Sipahimalani, P., Bowlby, R., Brooks, D., Thiessen, N., Coarfa, C., Ma, Y., Moore, R. A. & 8 others, Schein, J. E., Mungall, A. J., Liu, J., Pecot, C. V., Sood, A. K., Jones, S. J. M., Marra, M. A. & Gunaratne, P. H., 2016, In: OncoTarget. 7, 18, p. 25930-25948 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    miRMaid: a unified programming interface for microRNA data resources

    Jacobsen, A., Krogh, Anders, Kauppinen, S. & Lindow, M., 2010, In: BMC Bioinformatics. 11, Suppl 1, p. 29

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    microRNA-101 is a potent inhibitor of autophagy

    Frankel, Lisa, Wen, J., Lees, M., Høyer-Hansen, M., Farkas, T., Krogh, Anders, Jäättelä, M. & Lund, Anders H., 2011, In: E M B O Journal. 30, p. 4628-4641 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    microRNA-143 down-regulates Hexokinase 2 in colon cancer cells

    Gregersen, Lea Haarup, Jacobsen, A., Frankel, Lisa, Wen, J., Krogh, Anders & Lund, Anders H., 2012, In: B M C Cancer. 12, 232, 23 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-κB by targeting CARD10 and COPS8 in gastric cancer

    Crone, S. G., Jacobsen, A., Federspiel, B., Bardram, L., Krogh, Anders, Lund, Anders H. & Friis-Hansen, Lennart Jan, 2012, In: Molecular Cancer. 11, 71, p. 71 31 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    ncRNAs and polyphenols: new therapeutic strategies for hypertension

    Shirazi-Tehrani, E., Chamasemani, A., Firouzabadi, N. & Mousaei, M., 2022, In: RNA Biology. 19, 1, p. 575-587 13 p.

    Research output: Contribution to journalReviewResearchpeer-review

  8. Published

    netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks [version 2; peer review: 2 approved]

    Pai, S., Weber, P., Isserlin, R., Kaka, H., Hui, S., Shah, M. A., Giudice, L., Giugno, R., Nøhr, A. K., Baumbach, J. & Bader, G. D., 2021, In: F1000Research. 9, 42 p., 1239.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    p21-ras effector domain mutants constructed by "cassette" mutagenesis.

    Stone, J. C., Vass, W. C., Willumsen, Berthe Marie & Lowy, D. R., 1988, In: Molecular and Cellular Biology. 8, 8, p. 3565-9 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    p53 regulates expression of uncoupling protein 1 through binding and repression of PPARγ coactivator-1α

    Hallenborg, P., Fjære, E., Liaset, B., Petersen, R. K., Murano, I., Sonne, Si Brask, Falkerslev, M., Winther, Sally, Jensen, Benjamin Anderschou Holbech, Ma, Tao, Hansen, Jacob B., Cinti, S., Blagoev, B., Madsen, L. & Kristiansen, Karsten, 2016, In: American Journal of Physiology: Endocrinology and Metabolism. 310, 2, p. E116-128 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    pCramoll and rCramoll as new preventive agents against the oxidative dysfunction induced by hydrogen peroxide

    da Silva, L. C. N., Pereira Alves, N. M., Accioly Brelaz de Castro, M. C., Maciel Higino, T. M., Albuquerque da Cunha, C. R., Alves Pereira, V. R., Nogueira da Paz, N. V., Breitenbach Barroso Coelho, L. C., dos Santos Correia, M. T. & Bressan Queiroz de Figueiredo, R. C., 2015, In: Oxidative Medicine and Cellular Longevity. 2015, 9 p., 520872.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    pH Regulatory Transporters in Pancreatic Ductal Adenocarcinoma

    Kong, S. C., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesisResearch

  13. Published

    pH dependence of amyloid-β-Cu(II) binding and oligomerization kinetics

    Pedersen, J. T., Borg, C. B., Teilum, Kaare & Hemmingsen, Lars Bo Stegeager, 2014, In: Journal of Biological Inorganic Chemistry. 19, Suppl 2, p. S755 1 p.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  14. Published

    pH regulation in sensitive and multidrug resistant Ehrlich ascites tumor cells

    Litman, Thomas, Pedersen, S. F., Kramhøft, B., Skovsgaard, T. & Hoffmann, E. K., 1998, In: Cellular Physiology and Biochemistry. 8, 3, p. 138-50 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    pH regulation in sensitive and multidrug resistant Ehrlich ascites tumor cells

    Litman, Thomas, Pedersen, Stine Helene Falsig, Kramhøft, B., Skovsgaard, T. & Hoffmann, E. K., 1998, In: Cell. Physiol. Biochem.. 8, p. 138-150

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    pH-Regulatory Proteins as Potential Targets in Breast Cancer

    Andersen, Anne Poder, 2016, Department of Biology, Faculty of Science, University of Copenhagen. 187 p.

    Research output: Book/ReportPh.D. thesisResearch

  17. Published

    pH-dependent effects of 2,4-dinitrophenol (DNP) on proliferation, endocytosis, fine structure and DNP resistance in Tetrahymena

    Nilsson, J. R., 1995, In: Journal of Eukaryotic Microbiology. Vol 42, p. 248-255

    Research output: Contribution to journalJournal articleResearch

  18. Published

    pH-dependent processing of yeast procarboxypeptidase Y by proteinase A in vivo and in vitro

    Sørensen, S. O., van den Hazel, H. B., Kielland-Brandt, M. & Winther, Jakob R., 1994, In: European Journal of Biochemistry. 220, 1, p. 19-27 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    pH-sensitive K+ channel TREK-1 is a novel target in pancreatic cancer

    Sauter, D. R. P., Sørensen, Christiane Elisabeth, Rapedius, M., Brüggemann, A. & Novak, Ivana, 2016, In: B B A - Molecular Basis of Disease. 1862, 10, p. 1994-2003 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    pHi regulation in Ehrlich mouse ascites tumor cells: Role of sodium-dependent and sodium-independent chloride-bicarbonate exchange

    Kramhøft, B., Hoffmann, E. K. & Simonsen, L. O., 1994, In: J. Membrane Biology. 138, p. 121-132

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    pXOOY: A dual-function vector for expression of membrane proteins in Saccharomyces cerevisiae and Xenopus laevis oocytes

    Vold, Victoria Amstrup, Glanville, S., Klærke, Dan Arne & Pedersen, Per Amstrup, 2023, In: PLoS ONE. 18, 2, 16 p., e0281868.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data

    Morin, S., Linnet, T. E., Lescanne, M., Schanda, P., Thompson, G. S., Tollinger, M., Teilum, Kaare, Gagne, S., Marion, D., Griesinger, C., Blackledge, M. & d’Auvergne, E. J., 2014, In: Bioinformatics. 30, 15, p. 2219-2220 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments

    Wen, B., Xu, S., Sheynkman, G. M., Feng, Q., Lin, L., Wang, Q., Xu, X., Wang, J. & Liu, S., 2014, In: Bioinformatics. 30, 21, p. 3136-3138 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    scVAE: variational auto-encoders for single-cell gene expression data

    Grønbech, Christopher Heje, Vording, M. F., Timshel, P., Sønderby, C. K., Pers, Tune H & Winther, Ole, 2020, In: Bioinformatics. 36, 16, p. 4415-4422 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

    Vitting-Seerup, K., Porse, Bo Torben, Sandelin, Albin Gustav & Waage, J., 2014, In: B M C Bioinformatics. 15, p. 1-7 7 p., 81.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    tRNAs Are Stable After All: Pitfalls in Quantification of tRNA from Starved Escherichia coli Cultures Exposed by Validation of RNA Purification Methods

    Prossliner, T., Agrawal, S., Heidemann, Ditte Fogh, Sorensen, M. A. A. & Svenningsen, Sine Lo, 2023, In: mBio. 14, 1, 18 p., e02805-22.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    the Relationsship between the Behavioural Response of Lactating Sows to Humans and the Mortality of their Piglets

    Pedersen, V., 1997, In: Proceedings of the 31st. international congress of the ISAE, 13-16 August.. p. 1

    Research output: Contribution to journalJournal articleResearch

  28. Published

    vcfpp: a C++ API for rapid processing of the variant call format

    Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    xP1 and xP4. P-domain peptides expressed in Xenopus laevis stomach mucosa

    Hauser, Frank & Hoffmann, W., 5 Nov 1991, In: The Journal of Biological Chemistry. 266, 31, p. 21306-9 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    xP2, a new member of the P-domain peptide family of potential growth factors, is synthesized in Xenopus laevis skin

    Hauser, Frank, Roeben, C. & Hoffmann, W., 15 Jul 1992, In: The Journal of Biological Chemistry. 267, 20, p. 14451-5 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

      Agarica - Mykologisk tisskrift utgitt av Norgers sopp- og nyttevekstforbund

    Læssøe, Thomas, 2007, In: Svampe. 56, p. 19-19 1 p.

    Research output: Contribution to journalLiterature reviewResearch

  32. Published

     An integrative study on neurogenesis, myogenesis, and gene expression in polychaete annelids

    Brinkmann, N., 2009, Biologisk Institut: Museum Tusculanum.

    Research output: Book/ReportPh.D. thesisResearch

  33. Published

     An interdisciplinary approach for studying greenhouse gases at the landscape scale

    Sitaula, B., Warner, W., Bakken, L., Hargreaves, K., Klemedtsson, L., Sitaula, J., Christensen, Søren & Priemé, Anders, 1995, In: Norwegian Journal of Agricultural Sciences. 9, 3-4, p. 189-209 21 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

     Comparative neuromuscular development in the flatworm-like phyla Acoela and Platyhelminthes

    Semmler, H., 2009, Biologisk Institut: Museum Tusculanum.

    Research output: Book/ReportPh.D. thesisResearch

  35. Published

     Distribution and composition of microbial populations in landfill leachate contaminated aquifer (Grindsted, Denmark)

    Ludvigsen, L., Albrechtsen, H., Ringelberg, D., Ekelund, Flemming & Christensen, T., 1999, In: Microbial Ecology. 37, 3, p. 197-207

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

     Effect of environmental change on the biodiversity and function of below-ground microbial communities (MICRODIVERS)

    Griffiths, B., Ritz, K., Bardgett, R., Cook, R., Christensen, Søren, Ekelund, Flemming, Sørensen, S., Bååth, E., Bloem, J., de Ruiter, P., Dolfing, J. & Nicolardot, B., 2000, Terrestrial ecosystem research in Europe: successes, challenges and policy. Sutton, MA., Moreno, JM., van der Putten, WH. & Struwe, S. (eds.). Luxembourg: European Commission, p. 115-116

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearch

  37. Published

     Fine structural observations on Gonyaulax spinifera (Dinophyceae), with special emphasis on the flagelar apparatus.

    Hansen, Gert, Moestrup, Øjvind & Roberts, K. R., 1996, In: Phycologia. 35, 4, p. 354-366 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

     Inducible hydroxylation and demethylation of the herbicide isoproturon by Cunninghamella elegans

    Jensen, B., Hangler, M., Rønhede, S. & Sørensen, S. R., 2007, In: FEMS Microbiology Letters. 268, 2, p. 254-260

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

     Marine derived dinoflagellates in Antarctic saline lakes: Community composition and annual dynamics

    Rengefors, K., Layborn-Parry, L., Logares, R., Marshall, W. A. & Hansen, Gert, 2008, In: Journal of Phycology. 44, 3, p. 592-604 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

     Production and emission of methane in a brackish and a freshwater wetland

    Priemé, Anders, 1994, In: Soil Biology & Biochemistry. 26, p. 7-18 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

     Responses of springtail and mite populations to prolonged periods of soil freeze-thaw cycles in a sub-arctic ecosystem

    Konestabo, H. S., Michelsen, Anders & Holmstrup, M., 2007, In: Applied Soil Ecology. 36, p. 136-146

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

     Serial replacement of diatom endosymbiont in two freshwater dinoflagellates, Peridiniopsis spp., (Peridiniales, Dinophyceae)

    Takano, Y., Hansen, Gert, Fujita, D. & Horiguchi, T., 2008, In: Phycologia. 47, p. 41-53 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

     Spatial variability of methane, nitrous oxide, and carbon dioxide emissions from drained grasslands

    Priemé, Anders, 1998, In: Soil Science Society of America Journal. 62, p. 810 817 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

     Subunit dynamics of the 26S proteasome

    Kriegenburg, F., 2009, Biologisk Institut: Museum Tusculanum.

    Research output: Book/ReportPh.D. thesisResearch

  45. Published

     The effect of VA mycorrhiza, phosphorus and drought stress on the growth of Acacia nilotica and Leucaena leucocephala seedlings

    Michelsen, Anders & Rosendahl, Søren, 1990, In: Plant and Soil. 124, p. 7-13

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

     Using planar optodes and MIMS to study O2 and CH4 dynamics in peat soil

    Jensen, L. A., Elberling, Bo, Glud, R. N., Kühl, Michael, Lauritsen, F. R. & Joensen, H. P., 2008.

    Research output: Contribution to conferencePosterResearch

  47. Published

    Ålegræs - økologisk samspil og retablering

    Sand-Jensen, Kaj, Borum, Jens & Flindt, M., 2013, In: Vand & Jord. 20, 1, p. 8-10 3 p.

    Research output: Contribution to journalJournal articleResearch

  48. Published

    Ålegræssets udbredelse

    Sand-Jensen, Kaj, Pedersen, M. F. & Krause-Jensen, D., 1997, In: Vand og Jord. 5, p. 210-213

    Research output: Contribution to journalJournal articleResearch

  49. Published

    Ånden i naturen

    Hoffmeyer, J., 21 Aug 2015, In: Weekendavisen, 4. sektion - Ideer. 1 p.

    Research output: Contribution to journalContribution to newspaper - Comment/debateCommunication

  50. Published

    Årets fund 2013 og 2014 Laver

    Alstrup, V. & Søchting, Ulrik, 2015, In: URT. 39, 1, p. 23-24 2 p.

    Research output: Contribution to journalJournal articleCommunication