Department of Biology

 

 
  1. 2024
  2. Published

    Interspecies interactions in dairy biofilms drive community structure and response against cleaning and disinfection

    Sadiq, F. A., De Reu, K., Yang, Nan, Burmølle, Mette & Heyndrickx, M., 2024, In: Biofilm. 7, 13 p., 100195.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Intra-colony spatial variance of oxyregulation and hypoxic thresholds for key Acropora coral species

    Dilernia, N. J., Woodcock, S., Camp, E. F., Hughes, D. J., Kühl, Michael & Suggett, D. J., 2024, In: Ecology and Evolution. 14, 3, 16 p., e11100.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations

    Liu, X., Lin, L., Sinding, M. H. S., Bertola, L. D., Hanghøj, K., Quinn, L., Garcia-Erill, G., Rasmussen, M. S., Schubert, M., Pečnerová, P., Balboa, R. F., Li, Z., Heaton, M. P., Smith, T. P. L., Pinto, R. R., Wang, X., Kuja, J., Brüniche-Olsen, A., Meisner, J., Santander, C. G. & 8 others, Ogutu, J. O., Masembe, C., Rodrigues da Fonseca, Rute Andreia, Muwanika, V., Siegismund, Hans Redlef, Albrechtsen, Anders, Moltke, Ida & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 16 p., 2921.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Investigations on Microbes Attached to the Cuticle of Phytonematodes

    Topalovic, Olivera, Radaković, Z. S., Elhady, A., Bredenbruch, S. & Heuer, H., 2024, Plant-Nematode Interactions. Molinari, S. (ed.). Vol. 2756. p. 257-270 14 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  7. Published

    Isochrony in barks of Cape fur seal (Arctocephalus pusillus pusillus) pups and adults

    Osiecka, A. N., Fearey, J., Ravignani, A. & Burchardt, L. S., 2024, In: Ecology and Evolution. 14, 3, 11 p., e11085.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Isolation of potentially novel species expands the genomic and functional diversity of Lachnospiraceae

    Lin, X., Hu, T., Wu, Z., Li, L., Wang, Y., Wen, D., Liu, X., Li, W., Liang, H., Jin, X., Xu, X., Wang, J., Yang, H., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: iMeta. 3, 2, 18 p., e174.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

    Rauluseviciute, I., Riudavets-puig, R., Blanc-mathieu, R., Castro-mondragon, J., Ferenc, K., Kumar, V., Lemma, R. B., Lucas, J., Chèneby, J., Baranasic, D., Khan, A., Fornes, O., Gundersen, S., Johansen, M., Hovig, E., Lenhard, B., Sandelin, Albin Gustav, Wasserman, W., Parcy, F. & Mathelier, A., 2024, In: Nucleic Acids Symposium Series. 52, D1, p. D174–D182 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. E-pub ahead of print

    Lake food web structure in Teici Nature reserve, Latvia: fish presence shapes functioning of pristine bog lake food webs

    Zagars, M., Christoffersen, Kirsten Seestern & Cremona, F., 2024, (E-pub ahead of print) In: Hydrobiologia.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Lipid shape and packing are key for optimal design of pH-sensitive mRNA lipid nanoparticles

    Tesei, Giulio, Hsiao, Y. W., Dabkowska, A., Grönberg, G., Yanez Arteta, M., Ulkoski, D., Bray, D. J., Trulsson, M., Ulander, J., Lund, M. & Lindfors, L., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 2, 11 p., e2311700120.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Long-read genome sequencing provides novel insights into the harmful algal bloom species Prymnesium parvum

    Jian, J., Wu, Z., Silva-núñez, A., Li, X., Zheng, X., Luo, B., Liu, Y., Fang, X., Workman, C. T., Larsen, T. O., Hansen, Per Juel & Sonnenschein, E. C., 2024, In: Science of the Total Environment. 908, 168042.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published
  14. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Long-term phytoplankton dynamics in two High Arctic lakes (north-east Greenland)

    Moedt, Sanne Mariël, Olrik, K., Schmidt, N. M., Jeppesen, E. & Christoffersen, Kirsten Seestern, 2024, In: Freshwater Biology. 69, 3, p. 403-415 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch

    Jakobsen, S. T., Jensen, R. A. M., Madsen, M. S., Ravnsborg, T., Vaagenso, C. S., Siersbæk, M. S., Einarsson, H., Andersson, Robin, Jensen, O. N. & Siersbæk, R., 2024, In: Nature Genetics. 56, p. 663–674 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    MacroLoops for microRNAs: shall we revise the maximum allowed size?

    Arribas Hernandez, Laura, 2024, In: The Plant Cell.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Mechanisms of Systemic Osmoregulation in Insects

    Halberg, Kenneth Veland & Denholm, B., 2024, In: Annual Review of Entomology. 69, p. 415-438 24 p.

    Research output: Contribution to journalReviewResearchpeer-review

  19. Published

    Meta‐analysis Contrasting Freshwater Biodiversity in Forests and Oil Palm Plantations with and without Riparian Buffers

    Rojas‐Castillo, O. A., Kepfer Rojas, Sebastian, Juen, L., Fogaça De Assis Montag, L., Carvalho, F. G., Mendes, T. P., Chua, K. W. J., Wilkinson, C. L., Amal, M. N. A., Fahmi‐Ahmad, M. & Jacobsen, Dean, 2024, In: Conservation Biology. 38, 1, p. 1-14 14 p., e14172.

    Research output: Contribution to journalReviewResearchpeer-review

  20. Published

    Microbial Symbiont Contributions to Fungus-Farming Termite Health and Disease

    Murphy, Rob, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 317 p.

    Research output: Book/ReportPh.D. thesisResearch

  21. Published

    Microbial community composition unaffected by mycorrhizal plant removal in sub-arctic tundra

    Kirchhoff, L., Gavazov, K., Blume-Werry, G., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering, Peter, M., Pfister, S., Väisänen, M. & Monteux, S., 2024, In: Fungal Ecology. 69, 11 p., 101342.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity

    Raju, S. C., Molinaro, A., Awoyemi, A., Jørgensen, S. F., Braadland, P. R., Nendl, A., Seljeflot, I., Ueland, P. M., McCann, A., Aukrust, P., Vestad, B., Mayerhofer, C., Broch, K., Gullestad, L., Lappegård, K. T., Halvorsen, B., Kristiansen, Karsten, Hov, J. R. & Trøseid, M., 2024, In: Genome Medicine. 16, 1, 12 p., 27.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Microeukaryotic plankton evolutionary constraints in a subtropical river explained by environment and bacteria along differing taxonomic resolutions

    Ren, K., Mo, Y., Xiao, P., Rønn, Regin, Xu, Z., Xue, Y., Chen, H., Rivera, W. L., Rensing, C. & Yang, J., 2024, In: ISME communications. 4, 1, 10 p., ycae026.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Molecular switching in transcription through splicing and proline-isomerization regulates stress responses in plants

    Theisen, Frederik Friis, Prestel, Andreas, Elkjær, Steffie Martina H, Leurs, Y. H. A., Morffy, N., Strader, L. C., O'Shea, Charlotte, Teilum, Kaare, Kragelund, Birthe Brandt & Skriver, Karen, 2024, In: Nature Communications. 15, 1, 13 p., 592.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts

    Pearman, P. B., Broennimann, O., Aavik, T., Albayrak, T., Alves, P. C., Aravanopoulos, F. A., Bertola, L. D., Biedrzycka, A., Buzan, E., Cubric-Curik, V., Djan, M., Fedorca, A., Fuentes-Pardo, A. P., Fussi, B., Godoy, J. A., Gugerli, F., Hoban, S., Holderegger, R., Hvilsom, C., Iacolina, L. & 32 others, Kalamujic Stroil, B., Klinga, P., Konopiński, M. K., Kopatz, A., Laikre, L., Lopes-Fernandes, M., McMahon, B. J., Mergeay, J., Neophytou, C., Pálsson, S., Paz-Vinas, I., Posledovich, D., Primmer, C. R., Raeymaekers, J. A. M., Rinkevich, B., Rolečková, B., Ruņģis, D., Schuerz, L., Segelbacher, G., Kavčič Sonnenschein, K., Stefanovic, M., Thurfjell, H., Träger, S., Tsvetkov, I. N., Velickovic, N., Vergeer, P., Vernesi, C., Vilà, C., Westergren, M., Zachos, F. E., Guisan, A. & Bruford, M., 2024, In: Nature Ecology and Evolution. 8, p. 267–281 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Multiparameter Sensing of Oxygen and pH at Biological Interfaces via Hyperspectral Imaging of Luminescent Sensor Nanoparticles

    Bognár, Z., Moßhammer, Maria, Brodersen, Kasper Elgetti, Bollati, Elena, Gyurcsányi, R. E. & Kühl, Michael, 2024, In: ACS Sensors. 9, 4, p. 1763-1774 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Multiple mutations in the Nav1.4 sodium channel of New Guinean toxic birds provide auto‐resistance to deadly batrachotoxin

    Bodawatta, Kasun Harshana, Hu, H., Schalk, F., Daniel, J. M., Maiah, G., Koane, B., Iova, B., Beemelmanns, C., Poulsen, Michael & Jønsson, Knud Andreas, 2024, In: Molecular Ecology. 33, 9, 14 p., e16878.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Myotubularin-related-protein-7 inhibits mutant (G12V) K-RAS by direct interaction

    Weidner, P., Saar, D., Söhn, M., Schroeder, T., Yu, Y., Zöllner, F. G., Ponelies, N., Zhou, X., Zwicky, A., Rohrbacher, F. N., Pattabiraman, V. R., Tanriver, M., Bauer, A., Ahmed, H., Ametamey, S. M., Riffel, P., Seger, R., Bode, J. W., Wade, R. C., Ebert, M. P. A. & 2 others, Kragelund, Birthe Brandt & Burgermeister, E., 2024, In: Cancer Letters. 588, 19 p., 216783.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Nature Forest Reserves in Tanzania and their importance for conservation

    Ract, C., Burgess, Neil David, Dinesen, Lars, Sumbi, P., Malugu, I., Latham, J., Anderson, L., Gereau, R. E., de Lima, M. G., Akida, A., Nashanda, E., Shabani, Z., Tango, Y., Mteleka, S., Silayo, D. S., Mwangi, J., Lyatuu, G., Platts, P. J. & Rovero, F., 2024, In: PLoS ONE. 19, 2, 15 p., e0281408.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system

    Bittner, Meriel Jennifer, Bannon, C. C., Rowland, E., Sundh, J., Bertrand, E. M., Andersson, A. F., Paerl, R. W. & Riemann, Lasse, 2024, In: ISME communications. 4, 1, 16 p., ycad016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Nitrogen immobilization could link extreme winter warming events to Arctic browning

    Rasmussen, Laura Helene, Danielsen, Birgitte Kortegaard, Elberling, Bo, Ambus, Per Lennart, Björkman, M. P., Rinnan, Riikka & Andresen, L. C., 2024, In: Soil Biology and Biochemistry. 191, 11 p., 109319.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Nitrogen uptake in lentil cultivar mixtures is not predictable from pure stands performance but is correlated with agronomic parameters and experimental conditions

    Lorenzetti, E., Carlesi, S., Michelsen, Anders & Bàrberi, P., 2024, In: Agriculture and Food Security. 13, 1, 13 p., 11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument

    Khani, M., Hansen, Mads Frederik, Rasekh, B., Nosrati, M., Burmølle, Mette, Ghasemipanah, K. & Zamir, S. M., 2024, In: Journal of Industrial and Engineering Chemistry. 132, p. 448-460 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Organismal and cellular growth control by cholesterol as a nutritronal signal

    Lassen, Mette, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/ReportPh.D. thesisResearch

  35. Published

    Osmotic stress tolerance and transcriptomic response of Ramazzottius varieornatus (Eutardigrada: Ramazzottiidae) following tun formation

    Emdee, N., Møbjerg, A., Grollmann, M. M. & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 220-229 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. E-pub ahead of print

    Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

    Jimenez Serna, Juan de la Cruz, Armstrong, W., Colmer, T. D. & Pedersen, Ole, 2024, (E-pub ahead of print) In: Plant Physiology. kiae046.

    Research output: Contribution to journalComment/debateResearchpeer-review

  37. E-pub ahead of print

    PAT mRNA decapping factors are required for proper development in Arabidopsis

    Zuo, Zhangli Thomsen, Roux, M. E., Dagdas, Y. F., Rodriguez, Eleazar & Petersen, M., 2024, (E-pub ahead of print) In: FEBS Letters.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    PICH deficiency limits the progression of MYC-induced B-cell lymphoma

    Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    PPARγ antagonists induce aromatase transcription in adipose tissue cultures

    Ardenkjær-Skinnerup, J., Saar, Daniel, Petersen, Patricia Stephanie S, Pedersen, M., Svingen, T., Kragelund, Birthe Brandt, Hadrup, N., Ravn-Haren, G., Emanuelli, Brice, Brown, K. A. & Vogel, U., 2024, In: Biochemical Pharmacology. 222, 13 p., 116095.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Phytoplankton community changes in relation to nutrient fluxes along a quasi-stationary front

    Bendtsen, Jørgen, Daugbjerg, Niels, Jensen, R. S., dbt998, dbt998, Nielsen, M. H., Hansen, J. L. S. & Richardson, Katherine, 2024, In: Marine Ecology - Progress Series. 727, p. 67-80 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Phytoremediation in the Guadiamar Green Corridor (SW Spain): Trace element uptake by plants and effects on soil fungal diversity

    Madejón, P., Domínguez, M. T., Gil-Martínez, M. & Madejón, E., 2024, In: Advances in Botanical Research. 109, p. 255-294 40 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Plant trait and vegetation data along a 1314 m elevation gradient with fire history in Puna grasslands, Perú

    Halbritter, A. H., Vandvik, V., Cotner, S. H., Farfan-Rios, W., Maitner, B. S., Michaletz, S. T., Oliveras Menor, I., Telford, R. J., Ccahuana, A., Cruz, R., Sallo-Bravo, J., Santos-Andrade, P. E., Vilca-Bustamante, L. L., Castorena, M., Chacón-Labella, J., Christiansen, C. T., Duran, S. M., Egelkraut, D. D., Gya, R., Haugum, S. V. & 42 others, Seltzer, L., Silman, M. R., Strydom, T., Spiegel, M. P., Barros, A., Birkeli, K., Boakye, M., Chiappero, F., Chmurzynski, A., Garen, J. C., Gaudard, J., Gauthier, T. L. J., Geange, S. R., Gonzales, F. N., Henn, J. J., Hošková, K., Isaksen, A., Jessup, L. H., Johnson, W., Kusch, E., Lepley, K., Lift, M., Martyn, T. E., Muñoz Mazon, M., Middleton, S. L., Quinteros Casaverde, N. L., Navarro, J., Zepeda, V., Ocampo-Zuleta, K., Palomino-Cardenas, A. C., Pastor Ploskonka, S., Pierfederici, M. E., Pinelli, V., Rickenback, J., Roos, R. E., Rui, H. S., Sanchez Diaz, E., Sánchez-Tapia, A., Smith, A., Urquiaga-Flores, E., von Oppen, J. & Enquist, B. J., 2024, In: Scientific Data. 11, 1, 18 p., 225.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia

    Rodrigues da Fonseca, Rute Andreia, Campos, P. F., Rey de la Iglesia, Alba, Barroso, G. V., Bergeron, Lucie Adrienne, Nande, M., Tuya, F., Abidli, S., Pérez, M., Riveiro, I., Carrera, P., Jurado-Ruzafa, A., Santamaría, M. T. G., Faria, R., Machado, A. M., Fonseca, M. M., Froufe, E. & Castro, L. F. C., 2024, In: Genes. 15, 2, 15 p., 170.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Population genomics of the muskox' resilience in the near absence of genetic variation

    Pečnerová, P., Lord, E., Garcia-Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., Lin, L., Liu, S., Carøe, C., Dalerum, F., Götherström, A., Måsviken, J., Vartanyan, S., Raundrup, K., Al-Chaer, A., Rasmussen, L. & 11 others, Hvilsom, C., Heide-Jørgensen, M. P., Sinding, Mikkel Holger Strander, Aastrup, P., Van Coeverden de Groot, P. J., Schmidt, N. M., Albrechtsen, Anders, Dalén, L., Heller, Rasmus, Moltke, Ida & Siegismund, Hans Redlef, 2024, In: Molecular Ecology. 33, 2, 25 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Population size and social structure of lions in a west African protected area

    Gueye, M., Pellaton, R., Van Cauteren, D., Mengual, L., Van Dongen, S., Leirs, H., Bertola, Laura, Faye, P. M., Diop, B., Diop, M. M., Kanté, A. & de Iongh, H., 2024, In: African Journal of Ecology. 62, 1, 11 p., e13226.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Population structure and migration in the Eastern Highlands of Papua New Guinea, a region impacted by the kuru epidemic

    Quinn, Liam James Elgaard, Whitfield, J., Alpers, M. P., Campbell, T., Hummerich, H., Pomat, W., Siba, P., Koki, G., Moltke, Ida, Collinge, J., Hellenthal, G. & Mead, S., 2024, In: American Journal of Human Genetics. 111, 4, p. 668-679 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Positive selection has shaped the evolution of Argentine ant immune genes both in native and introduced supercolonies

    Holmberg, I., Tolonen, L., Paviala, J., Pedersen, Jes Søe, Helanterä, H. & Viljakainen, L., 2024, In: Journal of Evolutionary Biology. 37, 2, p. 131–140 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Postembryonic development and male paedomorphosis in Osedax (Siboglinidae, Annelida)

    Worsaae, Katrine, Rouan, Alice Jeanne Monique Nadja, Seaver, E., Miyamoto, N. & Tilic, E., 2024, In: Frontiers in Neuroscience. 18, 18 p., 1369274.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Predicting peptide–MHC stability and immunogenicity with deep learning

    Prachar, Marek, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 258 p.

    Research output: Book/ReportPh.D. thesisResearch

  50. Published

    Protein variant effect prediction using machine learning

    Blaabjerg, Lasse Møller, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 164 p.

    Research output: Book/ReportPh.D. thesisResearch

  51. Published

    Recent progress in understanding the cellular and genetic basis of plant responses to low oxygen holds promise for developing flood-resilient crops

    Fagerstedt, K. V., Pucciariello, C., Pedersen, Ole & Perata, P., 2024, In: Journal of Experimental Botany. 75, 5, p. 1217–1233 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Recommendations for Bioinformatic Tools in lncRNA Research

    Distefano, R., Ilieva, M., Rennie, Sarah & Uchida, S., 2024, In: Current Bioinformatics. 19, 1, p. 14-20 7 p.

    Research output: Contribution to journalReviewResearchpeer-review

  53. Published

    Regional impacts of warming on biodiversity and biomass in high latitude stream ecosystems across the Northern Hemisphere

    Jackson, M. C., Friberg, N., Moliner Cachazo, L., Clark, D. R., Mutinova, P. T., O’Gorman, E. J., Kordas, R. L., Gallo, B., Pichler, D. E., Bespalaya, Y., Aksenova, O. V., Milner, A., Brooks, S. J., Dunn, N., Lee, K. W. K., Ólafsson, J. S., Gíslason, G. M., Millan, L., Bell, T., Dumbrell, A. J. & 1 others, Woodward, G., 2024, In: Communications Biology . 7, 1, 8 p., 316.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    Regulation of polycystin-2 trafficking to and at the primary cilium in kidney epithelial cells

    Rezi, Csenge Kata, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 188 p.

    Research output: Book/ReportPh.D. thesisResearch

  55. Published

    Relationship between the female cervico-vaginal microbiome and women’s health

    Chen, Chen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 141 p.

    Research output: Book/ReportPh.D. thesisResearch

  56. Published

    Removal from the wild endangers the once widespread long-tailed macaque

    Gamalo, L. E., Ilham, K., Jones-Engel, L., Gill, M., Sweet, R., Aldrich, B., Phiapalath, P., Van Bang, T., Ahmed, T., Kite, S., Paramasivam, S., Seiha, H., Zainol, M. Z., Nielsen, D. R. K., Ruppert, N., Fuentes, A. & Hansen, Malene Friis, 2024, In: American Journal of Primatology. 86, 3, 10 p., e23547.

    Research output: Contribution to journalComment/debateResearchpeer-review

  57. Published

    Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

    Guo, J., Xue, J., Yin, Y., Pedersen, Ole & Hua, J., 2024, In: Frontiers in Plant Science. 15, 13 p., 1355729.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Root acclimations to soil flooding prime rice (Oryza sativa L.) for subsequent conditions of water deficit

    Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa, Liu, Fulai, Tomasella, M., Nardini, A. & Pedersen, Ole, 2024, In: Plant and Soil. 494, p. 529-546

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    Seafloor primary production in a changing Arctic Ocean

    Attard, K., Singh, R. K., Gattuso, J. P., Filbee-Dexter, K., Krause-Jensen, D., Kühl, Michael, Sejr, M. K., Archambault, P., Babin, M., Bélanger, S., Berg, P., Glud, R. N., Hancke, K., Jänicke, S., Qin, J., Rysgaard, S., Sørensen, E. B., Tachon, F., Wenzhöfer, F. & Ardyna, M., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 11, 10 p., e2303366121.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Published

    Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs

    Brodersen, Kasper Elgetti, Moßhammer, Maria, Bittner, Meriel Jennifer, Hallstrøm, S., Santner, J., Riemann, Lasse & Kühl, Michael, 2024, In: Microbiology Spectrum. 12, 4, 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    Short- and long-term plant and microbial uptake of 15N-labelled urea in a mesic tundra heath, West Greenland

    Barthelemy, H., Nobel, L. A., Stark, S., Väisänen, M., Olofsson, J. & Michelsen, Anders, 2024, In: Polar Biology. 47, p. 1-15 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Published

    Spatial chromatin accessibility sequencing resolves high-order spatial interactions of epigenomic markers

    Xie, Y., Ruan, F., Li, Y., Luo, M., Zhang, C., Chen, Z., Xie, Z., Weng, Z., Chen, W., Chen, W., Fang, Y., Sun, Y., Guo, M., Wang, J., Xu, S., Wang, H. & Tang, C., 2024, In: eLife. 12, 20 p., RP87868.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    Strong individual distinctiveness across the vocal repertoire of a colonial seabird, the little auk, Alle alle

    Osiecka, A. N., Briefer, Elodie, Kidawa, D. & Wojczulanis-Jakubas, K., 2024, In: Animal Behaviour. 210, p. 199-211 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation

    Wang, D., Yang, X., Ren, Z., Hu, B., Zhao, H., Yang, K., Shi, P., Zhang, Z., Feng, Q., Nawenja, C. V., Obanda, V., Robert, K., Nalikka, B., Waruhiu, C. N., Ochola, G. O., Onyuok, S. O., Ochieng, H., Li, B., Zhu, Y., Si, H. & 9 others, Yin, J., Kristiansen, Karsten, Jin, X., Xu, X., Xiao, M., Agwanda, B., Ommeh, S., Li, J. & Shi, Z. L., 2024, In: Microbiome. 12, 1, 17 p., 72.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. Published

    Targeting synthesis of the Chromosome Replication Initiator Protein DnaA by antisense PNA-peptide conjugates in Escherichia coli

    Campion, C., Charbon, Godefroid, Nielsen, Peter E. & Løbner-Olesen, Anders, 2024, In: Frontiers in Antibiotics. 3, 10 p., 1384390.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    The Advancement in Spring Vegetation Phenology in the Northern Hemisphere Will Reverse After 2060 Under Future Moderate Warming Scenarios

    Mo, Y., Chen, S., Wu, Z., Tang, Jing & Fu, Y., 2024, In: Earth's Future. 12, 3, 17 p., e2023EF003788.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    The Arctic Plant Aboveground Biomass Synthesis Dataset

    Berner, L. T., Orndahl, K. M., Rose, M., Tamstorf, M., Arndal, M. F., Alexander, H. D., Humphreys, E. R., Loranty, M. M., Ludwig, S. M., Nyman, J., Juutinen, S., Aurela, M., Happonen, K., Mikola, J., Mack, M. C., Vankoughnett, M. R., Iversen, C. M., Salmon, V. G., Yang, D., Kumar, J. & 34 others, Grogan, P., Danby, R. K., Scott, N. A., Olofsson, J., Siewert, M. B., Deschamps, L., Lévesque, E., Maire, V., Morneault, A., Gauthier, G., Gignac, C., Boudreau, S., Gaspard, A., Kholodov, A., Bret-Harte, M. S., Greaves, H. E., Walker, D., Gregory, F. M., Michelsen, Anders, Kumpula, T., Villoslada, M., Ylänne, H., Luoto, M., Virtanen, T., Forbes, B. C., Hölzel, N., Epstein, H., Heim, R. J., Bunn, A., Holmes, R. M., Hung, J. K. Y., Natali, S. M., Virkkala, A. M. & Goetz, S. J., 2024, In: Scientific Data. 11, 1, 13 p., 305.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    The effect of dairy products on liver fat and metabolic risk markers in males with abdominal obesity – a four-arm randomized controlled trial

    Sandby, Karoline, Magkos, Faidon, Chabanova, E., Petersen, E. T., Krarup, T., Bertram, H. C., Kristiansen, Karsten & Geiker, Nina Rica Wium, 2024, In: Clinical Nutrition. 43, 2, p. 534-542

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published

    The extrachromosomal circular DNA atlas of aged and young mouse brains

    Hong, X., Li, J., Han, Peng, Li, S., Yu, J., Zhang, H., Li, J., Dang, Y. & Xiang, X., 2024, In: Scientific Data. 11, 1, 8 p., 318.

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published
  72. Published

    The molecular basis for cellular function of intrinsically disordered protein regions

    Holehouse, A. S. & Kragelund, Birthe Brandt, 2024, In: Nature Reviews Molecular Cell Biology. 25, p. 187–211 25 p.

    Research output: Contribution to journalReviewResearchpeer-review

  73. Published

    The nightscape of the Arctic winter shapes the diving behavior of a marine predator

    Chambault, P., Teilmann, J., Tervo, O., Sinding, Mikkel Holger Strander & Heide-Jørgensen, M. P., 2024, In: Scientific Reports. 14, 1, 9 p., 3908.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    The relationships between biotic uniqueness and abiotic uniqueness are context dependent across drainage basins worldwide

    Snåre, H., García-Girón, J., Alahuhta, J., Bini, L. M., Boda, P., Bonada, N., Brasil, L. S., Callisto, M., Castro, D. M. P., Chen, K., Csabai, Z., Datry, T., Domisch, S., García-Marquez, J. R., Floury, M., Friberg, N., Gill, B. A., González-Trujillo, J. D., Göthe, E., Haase, P. & 29 others, Hamada, N., Hill, M. J., Hjort, J., Juen, L., Jupke, J. F., de Faria, A. P. J., Li, Z., Ligeiro, R., Linares, M. S., Luiza-Andrade, A., Macedo, D. R., Mathers, K. L., Mellado-Diaz, A., Milosevic, D., Moya, N., Poff, N. L. R., Rolls, R. J., Roque, F. O., Saito, V. S., Sandin, L., Schäfer, R. B., Scotti, A., Siqueira, T., Martins, R. T., Valente-Neto, F., Wang, B., Wang, J., Xie, Z. & Heino, J., 2024, In: Landscape Ecology. 39, 4, 18 p., 86.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    The rostral micro-tooth morphology of blue marlin, Makaira nigricans

    Pacher, K., Breuker, M., Hansen, M. J., Kurvers, R. H. J. M., Häge, J., Dhellemmes, F., Domenici, P., Steffensen, John Fleng, Krause, S., Hildebrandt, T., Fritsch, G., Bach, P., Sabarros, P. S., Zaslansky, P., Mahlow, K., Müller, J., Armas, R. G., Ortiz, H. V., Galván-Magaña, F. & Krause, J., 2024, In: Journal of Fish Biology. 104, 3, p. 713-722 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    The use of biomimetic surfaces to reduce single- and dual-species biofilms of Escherichia coli and Pseudomonas putida

    Teixeira-Santos, R., Azevedo, A., Romeu, M. J., Amador Hierro, Cristina Isabel, Gomes, L. C., Whitehead, K. A., Sjollema, J., Burmølle, Mette & Mergulhão, F. J., 2024, In: Biofilm. 7, 13 p., 100185.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Translational frontiers: insight from lymphatics in skin regeneration

    Jiang, Y. & Perez-Moreno, Mirna, 2024, In: Frontiers in Physiology. 15, 8 p., 1347558.

    Research output: Contribution to journalReviewResearchpeer-review

  78. Published

    Transmembrane transporter proteins: Capturing transport in motion

    Loland, Claus Juul, Wellendorph, Petrine, Pedersen, Stine Helene Falsig & Gether, Ulrik, 2024, In: Basic and Clinical Pharmacology and Toxicology. 134, 2, p. 203-205 3 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  79. Published

    Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems

    Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.

    Research output: Book/ReportPh.D. thesisResearch

  80. Published

    Water quality in a shallow eutrophic lake is unaffected by extensive thinning of planktivorous and benthivorous fish species

    Polauke, E., Sø, Jonas Stage, Carl, Henrik, Møller, Peter Rask, Reitzel, K., Sand-Jensen, Kaj & Kragh, T., 2024, In: Journal of Environmental Management. 356

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    vcfpp: a C++ API for rapid processing of the variant call format

    Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. 2023
  83. Published

    Cold-stimulated brown adipose tissue activation is related to changes in serum metabolites relevant to NAD+ metabolism in humans

    U-Din, M., de Mello, V. D., Tuomainen, M., Raiko, J., Niemi, T., Fromme, T., Klåvus, A., Gautier, N., Haimilahti, K., Lehtonen, M., Kristiansen, Karsten, Newman, J. W., Pietiläinen, K. H., Pihlajamäki, J., Amri, E. Z., Klingenspor, M., Nuutila, P., Pirinen, E., Hanhineva, K. & Virtanen, K. A., 26 Sep 2023, In: Cell Reports. 42, 9, 23 p., 113131.

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species

    Dai, X., Bian, P., Hu, D., Luo, F., Huang, Y., Jiao, S., Wang, X., Gong, M., Li, R., Cai, Y., Wen, J., Yang, Q., Deng, W., Nanaei, H. A., Wang, Y., Wang, F., Zhang, Z., Rosen, B. D., Heller, Rasmus & Jiang, Y., Aug 2023, In: Genome Research. 33, 8, p. 1284-1298 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    Fitting Force Field Parameters to NMR Relaxation Data

    Kümmerer, Felix, Orioli, S. & Lindorff-Larsen, Kresten, 5 Jun 2023, In: Journal of Chemical Theory and Computation. 19, 12, p. 3741-3751 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    Nyt udstyr måler tabene af metan og CO2 fra søer

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, Kenneth Thorø & Kragh, T., 25 May 2023, Videnskab.dk.

    Research output: Other contributionNet publication - Internet publicationCommunication

  87. Published

    Fra forsøg til forankring: Flersproget faglig skrivning på bacheloruddannelsen i biokemi

    Larsen, Sanne, Laursen, Katja Årosin & Skriver, Karen, 3 May 2023, In: Dansk universitetspædagogisk tidsskrift [online]. p. 25-40 16 p.

    Research output: Contribution to journalJournal articleCommunication

  88. Published

    Modeling of flexible membrane-bound biomolecular complexes for solution small-angle scattering

    Barclay, A., Kragelund, Birthe Brandt, Arleth, Lise & Pedersen, Martin Cramer, Apr 2023, In: Journal of Colloid and Interface Science. 635, p. 611-621 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Genetic architecture of spatial electrical biomarkers for cardiac arrhythmia and relationship with cardiovascular disease

    Young, W. J., Haessler, J., Benjamins, J-W., Repetto, L., Yao, J., Isaacs, A., Harper, A. R., Ramirez, J., Garnier, S., van Duijvenboden, S., Baldassari, A. R., Concas, M. P., Duong, T., Foco, L., Isaksen, J. L., Mei, H., Noordam, R., Nursyifa, C., Richmond, A., Santolalla, M. L. & 74 others, Sitlani, C. M., Soroush, N., Thériault, S., Trompet, S., Aeschbacher, S., Ahmadizar, F., Alonso, A., Brody, J. A., Campbell, A., Correa, A., Darbar, D., De Luca, A., Deleuze, J., Ellervik, Christina, Fuchsberger, C., Goel, A., Grace, C., Guo, X., Hansen, Torben, Heckbert, S. R., Jackson, R. D., Kors, J. A., Lima-Costa, M. F., Linneberg, Allan René, Macfarlane, P. W., Morrison, A. C., Navarro, P., Porteous, D. J., Pramstaller, P. P., Reiner, A. P., Risch, L., Schotten, U., Shen, X., Sinagra, G., Soliman, E. Z., Stoll, M., Tarazona-Santos, E., Tinker, A., Trajanoska, K., Villard, E., Warren, H. R., Whitsel, E. A., Wiggins, K. L., Arking, D. E., Avery, C. L., Conen, D., Girotto, G., Grarup, Niels, Hayward, C., Jukema, J. W., Mook-Kanamori, D. O., Olesen, Morten Steen Salling, Padmanabhan, S., Psaty, B. M., Pattaro, C., Ribeiro, A. L. P., Rotter, J. I., Stricker, B. H., van der Harst, P., van Duijn, C. M., Verweij, N., Wilson, J. G., Orini, M., Charron, P., Watkins, H., Kooperberg, C., Lin, H. J., Wilson, J. F., Kanters, Jørgen K., Sotoodehnia, N., Mifsud, B., Lambiase, P. D., Tereshchenko, L. G. & Munroe, P. B., 14 Mar 2023, In: Nature Communications. 14, 1, 16 p., 1411.

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    2023 BMC Ecology and Evolution image competition: the winning images

    Harman, J., Hipsley, Christy Anna, Jacobus, L. M., Liberles, D. A., Settele, J. & Traulsen, A., 2023, In: BMC Ecology and Evolution. 23, 1, 7 p., 32.

    Research output: Contribution to journalEditorialResearch

  91. Published

    Actinarctus doryphorus (Tanarctidae) DNA barcodes and phylogenetic reinvestigation of Arthrotardigrada with new A. doryphorus and Echiniscoididae sequences

    Grollmann, M. M., Jørgensen, Aslak & Møbjerg, Nadja, 2023, In: Zootaxa. 5284, 2, p. 351-363 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    Bacillus thuringiensis toxins divert progenitor cells toward enteroendocrine fate by decreasing cell adhesion with intestinal stem cells in Drosophila

    Jneid, Rouba, Loudhaief, Rihab, Zucchini-Pascal, N., Nawrot-Esposito, M. P., Fichant, A., Rousset, R., Bonis, M., Osman, D. & Gallet, A., 2023, In: eLife. 12, 34 p., e80179.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Bacillus velezensis SQR9 inhibition to fungal denitrification responsible for decreased N2O emissions from acidic soils

    Huang, Mengyuan, Zhang, Y., Wu, J., Wang, Y., Xie, Y., Geng, Y., Zhang, N., Michelsen, Anders, Li, S., Zhang, R., Shen, Q. & Zou, J., 2023, In: Science of the Total Environment. 885, 10 p., 163789.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Baldinia droopii sp. nov. (Suessiales, Dinophyceae), a new species from a small rainwater rock pool near Tvarminne, south-western Finland

    Hansen, Gert, Daugbjerg, Niels & Moestrup, Øjvind, 2023, In: Phycologia. 62, 1, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published

    Drosophila TNF/TNFRs: At the crossroad between metabolism, immunity, and tissue homeostasis

    Colombani, Julien & Andersen, Ditte Skovaa, 2023, In: FEBS Letters. 597, 19, p. 2416-2432 17 p.

    Research output: Contribution to journalReviewResearchpeer-review

  96. Published

    Gambierdiscus (gonyaulacales, dinophyceae) diversity in Vietnamese waters with description of G. vietnamensis sp. nov.

    Nguyen-Ngoc, L., Larsen, Jacob, Doan-Nhu, H., Nguyen, X. V., Chomérat, N., Lundholm, Nina, Phan-Tan, L., Dao, H. V., Nguyen, N. L., Nguyen, H. H. & Van Chu, T., 2023, In: Journal of Phycology. 59, 3, p. 496-517

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    Legionella maioricensis sp. nov., a new species isolated from the hot water distribution systems of a hospital and a shopping center during routine sampling

    Crespi, S., Drašar, V., Salvà-Serra, F., Jaén-Luchoro, D., Piñeiro-Iglesias, B., Lindemann, P. C., Aliaga-Lozano, F., Fernandez Juarez, Victor, Coll-García, G., Moore, E. R. B. & Bennasar-Figueras, A., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 1, 12 p., 005686.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Marchantiana pyramus, M. ramulicola and Austroplaca thisbe (Teloschistaceae, lichenized Ascomycota) - three new twig lichens from southern Patagonia

    Søchting, Ulrik, Sancho, L. G. & Arup, U., 2023, In: Lichenologist. 55, 5, p. 377-387 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published

    Mycena species can be opportunist-generalist plant root invaders

    Harder, Christoffer Bugge, Hesling, E., Botnen, S. S., Lorberau, K. E., Dima, B., von Bonsdorff-Salminen, T., Niskanen, T., Jarvis, S. G., Ouimette, A., Hester, A., Hobbie, E. A., Taylor, A. F. S. & Kauserud, H., 2023, In: Environmental Microbiology. 25, 10, 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published

    Teuvoahtiana meridionalis, a new species from Patagonia and Antarctica

    Halıcı, M. G., Søchting, Ulrik, Yiğit, M. K. & Arup, U., 2023, In: Nova Hedwigia. 116, 3-4, p. 417-432 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  102. Published

    Xyloplax princealberti (Asteroidea, Echinodermata): A New Species That Is Not Always Associated with Wood Falls

    Payne, C. Y., Tilic, E., Boschen-Rose, R. E., Gannon, A., Stiller, Josefin, Hiley, A. S., Grupe, B. M., Mah, C. L. & Rouse, G. W., 2023, In: Diversity. 15, 12, 21 p., 1212.

    Research output: Contribution to journalJournal articleResearchpeer-review

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