Department of Biology

 

 
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  1. 2023
  2. Published

    The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

    Mc Cartney, A. M., Formenti, G., Mouton, A., Panis, D. D., Marins, L. S., Leitão, H. G., Diedericks, G., Kirangwa, J., Morselli, M., Salces-Ortiz, J., Escudero, N., Iannucci, A., Natali, C., Svardal, H., Fernández, R., Pooter, T. D., Joris, G., Strazisar, M., Wood, J., Herron, K. E. & 30 others, Seehausen, O., Watts, P. C., Shaw, F., Davey, R. P., Minotto, A., Fernández, J. M., Böhne, A., Alegria, C., Alioto, T., Alves, P. C., Amorim, I. R., Aury, J., Backstrom, N., Baldrian, P., Baltrunaite, L., Barta, E., Bed’Hom, B., Belser, C., Bergsten, J., Bertrand, L., Bilandžija, H., Binzer-Panchal, M., Bista, I., Blaxter, M., Borges, P. A., Dias, G. B., Bosse, M., Garg, S., Madsen, O. & Stiller, Josefin, 2023, 51 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  3. Published

    Pooled analysis of frontal lobe transcriptomic data identifies key mitophagy gene changes in Alzheimer's disease brain

    Mei, T., Li, Yuan, Orduña Dolado, A., Li, Zhiquan, Andersson, Robin, Berliocchi, Laura & Rasmussen, Lene Juel, 2023, In: Frontiers in Aging Neuroscience. 15, 14 p., 1101216.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    When gluttony strikes: how high-fat diet impairs hepatic Ca2+ signalling

    Merrild, C. & Johansen, Valdemar Brimnes Ingemann, 2023, In: Journal of Physiology. 601, 12, p. 2245-2247

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  5. Published

    Primary cilia as dynamic and diverse signalling hubs in development and disease

    Mill, P., Christensen, Søren Tvorup & Pedersen, Lotte Bang, 2023, In: Nature Reviews. Genetics. 24, 21 p.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    The Mixoplankton Database (MDB): Diversity of photo‐phago‐trophic plankton in form, function, and distribution across the global ocean

    Mitra, A., Caron, D. A., Faure, E., Flynn, K. J., Leles, S. G., Hansen, Per Juel, McManus, G. B., Not, F., Rosario Gomes, H. D., Santoferrara, L. F., Stoecker, D. K. & Tillmann, U., 2023, In: Journal of Eukaryotic Microbiology. 70, 4, 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    High nutrient loads hinder successful restoration of natural habitats in freshwater wetlands

    Moeslund, J. E., Andersen, D. K., Brunbjerg, A. K., Bruun, Hans Henrik, Fløjgaard, C., McQueen, S. N., Nygaard, B. & Ejrnæs, R., 2023, In: Restoration Ecology. 31, 7, 13 p., e13796.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Microplastic pollution associated with reduced respiration in seagrass (Zostera marina L.) and associated epiphytes

    Molin, J. M., Groth-Andersen, W. E., Hansen, Per Juel, Kühl, Michael & Brodersen, Kasper Elgetti, 2023, In: Frontiers in Marine Science. 10, 14 p., 1216299.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning

    Moradigaravand, D., Li, L., Dechesne, A., Nesme, Joseph, de la Cruz, R., Ahmad, H., Banzhaf, M., Sørensen, Søren Johannes, Smets, B. F. & Kreft, J. U., 2023, In: Bioinformatics (Oxford, England). 39, 7, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Benchmarking RNA Editing Detection Tools

    Morales, D. R., Rennie, Sarah & Uchida, S., 2023, In: BioTech. 12, 3, 18 p., 56.

    Research output: Contribution to journal › Review › Research › peer-review

  11. Published

    The genetic background of hydrocephalus in a population-based cohort: implication of ciliary involvement

    Munch, Tina Nørgaard, Hedley, P. L., Hagen, C. M., Baekvad-Hansen, M., Geller, F., Bybjerg-Grauholm, J., Nordentoft, Merete, Borglum, A. D., Werge, Thomas, Melbye, M., Hougaard, D. M., Larsen, Lars Allan, Christensen, Søren Tvorup & Christiansen, M., 2023, In: Brain Communications. 5, 1, 14 p., fcad004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Impact of Microbial Symbionts on Fungus-Farming Termites and Their Derived Ecosystem Functions

    Murphy, Rob, Sinotte, Veronica Marie, Schmidt, Suzanne, Li, Guangshuo, Hamilton Renalias, J., Koné, N. A. & Poulsen, Michael, 2023, Assessing the Microbiological Health of Ecosystems. Hurst, C. J. (ed.). Wiley, p. 185-203

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  13. Published

    RibDif2: expanding amplicon analysis to full genomes

    Murphy, Rob & Strube, M. L., 2023, In: Bioinformatics Advances. 3, 1, 5 p., vbad111.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Modeling the radiative, thermal and chemical microenvironment of 3D scanned corals

    Murthy, Swathi, Picioreanu, C. & Kühl, Michael, 2023, In: Frontiers in Marine Science. 10, 17 p., 1160208.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Molecular Characterization and Morpho-Taxonomy of Gambierdiscus caribaeus Vandersea, Litaker, M.A.Faust, Kibler, W.C.Holland & P.A.Tester (Dinophyceae) from Mauritius Island, South-West Indian Ocean

    Mussai, P., Larsen, Jacob & Jeewon, R., 2023, In: Cryptogamie, Algologie. 44, 1, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Ribosomal DNA Sequence-Based Taxonomy and Antimicrobial Activity of Prorocentrum spp. (Dinophyceae) from Mauritius Coastal Waters, South-West Indian Ocean

    Mussai, P., Larsen, Jacob, Alrefaei, A. F. & Jeewon, R., 2023, In: Marine Drugs. 21, 4, 16 p., 216.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Flood-tolerant rice for enhanced production and livelihood of smallholder farmers of Africa

    Mwakyusa, L., Dixit, S., Herzog, Max, Heredia, M. C., Madege, R. R. & Kilasi, N. L., 2023, In: Frontiers in Sustainable Food Systems. 7, 13 p., 1244460.

    Research output: Contribution to journal › Review › Research › peer-review

  18. Published

    Screening of potential donors for anaerobic stress tolerance during germination in rice

    Mwakyusa, L., Heredia, M. C., Kilasi, N. L., Madege, R. R., Herzog, Max & Dixit, S., 2023, In: Frontiers in Plant Science. 14, 13 p., 1261101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    High-resolution crystal structure of the Mu8.1 conotoxin from Conus mucronatus

    Müller, E., Hackney, Celeste Menuet, Ellgaard, Lars & Morth, J. P., 2023, In: Acta crystallographica. Section F, Structural biology communications. 79, 9, p. 240-246 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    NHA1 is a cation/proton antiporter essential for the water-conserving functions of the rectal complex in Tribolium castaneum.

    Naseem, Muhammad Tayyib, Beaven, R., Koyama, Takashi, Naz, S., Su, S., Leader, D. P., Klærke, Dan Arne, Callø, Kirstine, Denholm, B. & Halberg, Kenneth Veland, 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 13, 11 p., e2217084120.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Plastic debris in lakes and reservoirs

    Nava, V., Chandra, S., Aherne, J., Alfonso, M. B., Antão-Geraldes, A. M., Attermeyer, K., Bao, R., Bartrons, M., Berger, S. A., Biernaczyk, M., Bissen, R., Brookes, J. D., Brown, D., Cañedo-Argüelles, M., Canle, M., Capelli, C., Carballeira, R., Cereijo, J. L., Chawchai, S., Christensen, S. T. & 59 others, Christoffersen, Kirsten Seestern, de Eyto, E., Delgado, J., Dornan, T. N., Doubek, J. P., Dusaucy, J., Erina, O., Ersoy, Z., Feuchtmayr, H., Frezzotti, M. L., Galafassi, S., Gateuille, D., Gonçalves, V., Grossart, H. P., Hamilton, D. P., Harris, T. D., Kangur, K., Kankılıç, G. B., Kessler, R., Kiel, C., Krynak, E. M., Leiva-Presa, À., Lepori, F., Matias, M. G., Matsuzaki, S. I. S., McElarney, Y., Messyasz, B., Mitchell, M., Mlambo, M. C., Motitsoe, S. N., Nandini, S., Orlandi, V., Owens, C., Özkundakci, D., Pinnow, S., Pociecha, A., Raposeiro, P. M., Rõõm, E. I., Rotta, F., Salmaso, N., Sarma, S. S. S., Sartirana, D., Scordo, F., Sibomana, C., Siewert, D., Stepanowska, K., Tavşanoğlu, Ü. N., Tereshina, M., Thompson, J., Tolotti, M., Valois, A., Verburg, P., Welsh, B., Wesolek, B., Weyhenmeyer, G. A., Wu, N., Zawisza, E., Zink, L. & Leoni, B., 2023, In: Nature. 619, p. 317-322 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Gambierdiscus (gonyaulacales, dinophyceae) diversity in Vietnamese waters with description of G. vietnamensis sp. nov.

    Nguyen-Ngoc, L., Larsen, Jacob, Doan-Nhu, H., Nguyen, X. V., Chomérat, N., Lundholm, Nina, Phan-Tan, L., Dao, H. V., Nguyen, N. L., Nguyen, H. H. & Van Chu, T., 2023, In: Journal of Phycology. 59, 3, p. 496-517

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Reasons for the dramatic loss of Lobelia dortmanna, a keystone plant species of softwater lakes in the Northern Hemisphere

    Nielsen, S. R., Martinsen, K. T., Pedersen, Ole & Båstrup-Spohr, Lars, 2023, In: Freshwater Biology. 68, 10, p. 1673-1684 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Global online trade in primates for pets

    Nijman, V., Morcatty, T. Q., El Bizri, H. R., Al-Razi, H., Ang, A., Ardiansyah, A., Atoussi, S., Bergin, D., Bell, S., Braga-Pereira, F., Campera, M., Das, N., Silva, F. E., Feddema, K., Foreman, G., Fourage, A., Gnanaolivu, S. D., Hansen, M. F., Račevska, E., Rapone, B. C. & 13 others, Regmi, G. R., Shepherd, C. R., Shukhova, S., Siriwat, P., Smith, J. H., Mir Mohamad Tabar, S. A., Tavares, A. S., Weldon, A. V., Wilson, A., Yamaguchi, N., Zhang, M., Svensson, M. S. & Anne-Isola Nekaris, K., 2023, In: Environmental Development. 48, 15 p., 100925.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Application of whole genome sequencing data in population genetics: identifying sex-linked scaffolds and inferring admixture in a unique cattle population

    Nursyifa, Casia, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 225 p.

    Research output: Book/Report › Ph.D. thesis › Research

  26. Published

    Exploring antidepressant treatment response using biological and clinical measurements

    Nøhr, A. K., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 125 p.

    Research output: Book/Report › Ph.D. thesis › Research

  27. Published

    The barrier to radial oxygen loss protects roots against hydrogen sulphide intrusion and its toxic effect

    Peralta Ogorek, Lucas León, Takahashi, H., Nakazono, M. & Pedersen, Ole, 2023, In: New Phytologist. 238, 5, p. 1825-1837 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Long-read MinION™ sequencing of 16S and 16S-ITS-23S rRNA genes provides species-level resolution of Lactobacillaceae in mixed communities

    Olivier, S. A., Bull, M. K., Strube, M. L., Murphy, Rob, Ross, T., Bowman, J. P. & Chapman, B., 2023, In: Frontiers in Microbiology. 14, 15 p., 1290756.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Salt-affected soils in Tanzanian agricultural lands: Type of soils and extent of the problem

    Omar, M. M., Shitindi, M. J., Massawe, B. H. J., Fue, K. G., Meliyo, J. L. & Pedersen, Ole, 2023, In: Sustainable Environment. 9, 1, 19 p., 2205731.

    Research output: Contribution to journal › Review › Research › peer-review

  30. Published

    Seabird’s cry: repertoire and vocal expression of contextual valence in the little auk (Alle alle)

    Osiecka, A. N., Briefer, Elodie, Kidawa, D. & Wojczulanis-Jakubas, K., 2023, In: Scientific Reports. 13, 1, 10 p., 8623.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Social calls of the little auk (Alle alle) reflect body size and possibly partnership, but not sex

    Osiecka, A. N., Briefer, Elodie, Kidawa, D. & Wojczulanis-jakubas, K., 2023, In: Royal Society Open Science. 10, 9, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop

    Oxenfarth, A., Kümmerer, Felix, Bottaro, S., Schnieders, R., Pinter, G., Jonker, H. R. A., Fürtig, B., Richter, C., Blackledge, M., Lindorff-Larsen, Kresten & Schwalbe, H., 2023, In: Journal of the American Chemical Society. 145, 30, p. 16557-16572 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Use and detection of a vitamin B1 degradation product yields new views of the marine B1 cycle and plankton metabolite exchange

    Paerl, R. W., Curtis, N. P., Bittner, Meriel Jennifer, Cohn, M. R., Gifford, S. M., Bannon, C. C., Rowland, E. & Bertrand, E. M., 2023, In: mBio. 14, 4, 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network

    Pan, X., Ma, Z., Sun, X., Li, H., Zhang, T., Zhao, C., Wang, N., Heller, Rasmus, Hung Wong, W., Wang, W., Jiang, Y. & Wang, Y., 2023, In: Genomics, Proteomics and Bioinformatics. 21, 3, p. 632-648 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Epithelium dynamics differ in time and space when exposed to the permeation enhancers penetramax and EGTA. A head-to-head mechanistic comparison

    Panou, D. A., Pedersen, Stine Helene Falsig, Kristensen, Mie & Nielsen, Hanne Mørck, 2023, In: Frontiers in Drug Delivery. 3, 16 p., 1221628.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Xyloplax princealberti (Asteroidea, Echinodermata): A New Species That Is Not Always Associated with Wood Falls

    Payne, C. Y., Tilic, E., Boschen-Rose, R. E., Gannon, A., Stiller, Josefin, Hiley, A. S., Grupe, B. M., Mah, C. L. & Rouse, G. W., 2023, In: Diversity. 15, 12, 21 p., 1212.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Cilia and flagella

    Pedersen, Lotte Bang, Jurisch-Yaksi, N., Schmid, F. M. & Christensen, Søren Tvorup, 2023, Encyclopedia of Cell Biology, Second Edition. Bradshaw, R. A., Hart, G. W. & Stahl, P. D. (eds.). 2 ed. Oxford: Elsevier, Vol. 3. p. 164-188 25 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  38. Published

    Genome sequence and genomic analysis of liver abscess caused by hypervirulent Klebsiella pneumoniae

    Pei, N., Liu, X., Jian, Z., Yan, Q., Liu, Q., Kristiansen, Karsten, Li, J. & Liu, W., 2023, In: 3 Biotech. 13, 3, 7 p., 76.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Outer apoplastic barriers in roots: prospects for abiotic stress tolerance

    Peralta Ogorek, Lucas León, Jimenez Serna, Juan de la Cruz, Visser, E. J. W., Takahashi, H., Nakazono, M., Shabala, S. & Pedersen, Ole, 2023, In: Functional Plant Biology. 51, 11 p., FP23133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Assessment of models for calculating the hydrodynamic radius of intrinsically disordered proteins

    Pesce, Francesco, Newcombe, Estella Anne, Seiffert, P., Tranchant, E. E., Olsen, Johan Gotthardt, Grace, C. R., Kragelund, Birthe Brandt & Lindorff-Larsen, Kresten, 2023, In: Biophysical Journal. 122, 2, p. 310-321 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Combining Experiments and Simulations to Examine the Temperature-Dependent Behavior of a Disordered Protein

    Pesce, Francesco & Lindorff-Larsen, Kresten, 2023, In: Journal of Physical Chemistry B. 127, 28, p. 6277-6286 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Understanding intrinsically disordered proteins: from integrative modelling to design

    Pesce, Francesco, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Temporal phosphoproteomics reveals WEE1-dependent control of 53BP1 pathway

    Petrosius, V., Benada, Jan, Nielsen, Olaf, Schoof, E. M. & Sørensen, Claus Storgaard, 2023, In: iScience. 26, 1, 24 p., 105806.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation

    Pikkupeura, Laura Maarit, Bardini Bressan, Raul, Guiu, J., Chen, Y., Maimets, Martti, Mayer, Daniela, Schweiger, P. J., Hansen, Stine Lind, Maciag, Grzegorz Jerzy, Larsen, Hjalte List, Lõhmussaar, Kadi, Pedersen, M. T., Teves, Joji Marie Yap, Lange, Jette Bornholdt, Benes, V., Sandelin, Albin Gustav & Jensen, Kim Bak, 2023, In: Science Advances. 9, 28, 16 p., eadf9460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Past, Present and Future of the Aral Sea - A Review of its Fauna and Flora before and during the Regression Crisis

    Plotnikov, I. S., Aladin, N. V., Zhakova, L. V., Mossin, J. & Høeg, Jens Thorvald, 2023, In: Zoological Studies. 62, 38 p., 19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    A research agenda for nonvascular photoautotrophs under climate change

    Porada, P., Bader, M. Y., Berdugo, M. B., Colesie, C., Ellis, C. J., Giordani, P., Herzschuh, U., Ma, Y., Launiainen, S., Nascimbene, J., Petersen, I., Raggio Quílez, J., Rodríguez-Caballero, E., Rousk, K., Sancho, L. G., Scheidegger, C., Seitz, S., Van Stan, J. T., Veste, M., Weber, B. & 1 others, Weston, D. J., 2023, In: New Phytologist. 237, 5, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Functions of m6A-YTH modules in plants: Lessons from high-throughput sequencing analyses

    Porcelli, C., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 178 p.

    Research output: Book/Report › Ph.D. thesis › Research

  48. Published

    tRNAs Are Stable After All: Pitfalls in Quantification of tRNA from Starved Escherichia coli Cultures Exposed by Validation of RNA Purification Methods

    Prossliner, T., Agrawal, S., Heidemann, Ditte Fogh, Sorensen, M. A. A. & Svenningsen, Sine Lo, 2023, In: mBio. 14, 1, 18 p., e02805-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Systematic Analysis of Long Non-Coding RNAs in Inflammasome Activation in Monocytes/Macrophages

    Qian, N., Distefano, R., Ilieva, M., Madsen, J. H., Rennie, Sarah & Uchida, S., 2023, In: Non-coding RNA. 9, 5, 16 p., 50.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    A population of stem cells with strong regenerative potential discovered in deer antlers

    Qin, T., Zhang, G., Zheng, Y., Li, S., Yuan, Y., Li, Q., Hu, M., Si, H., Wei, G., Gao, X., Cui, X., Xia, B., Ren, J., Wang, K., Ba, H., Liu, Z., Heller, R., Li, Z., Wang, W., Huang, J. & 2 others, Li, C. & Qiu, Q., 2023, In: Science (New York, N.Y.). 379, 6634, p. 840-847 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo

    Quinn, Liam James Elgaard, Garcia Erill, Genís, Santander, Cindy, Brüniche-Olsen, Anna, Liu, Xiaodong, Sinding, Mikkel Holger Strander, Heaton, M. P., Smith, T. P. L., Chrzanová Pecnerová, Patrícia, Bertola, Laura, Hanghøj, Kristian Ebbesen, Rasmussen, Malthe Sebro, De Jager, Deon, Siegismund, Hans Redlef, Albrechtsen, Anders, Heller, Rasmus & Moltke, Ida, 2023, In: Molecular Ecology. 32, 8, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Molecular Epidemiology of HCV RNA Genotype-3 in Dhaka City, Bangladesh

    Rahman, M. A., Islam, M. M., Ali, M. E., Islam, M. A., Afroze, F., Hossain, Mohammad Shamim & Rus'd, A. A., 2023, In: Global Medical Genetics. 10, 3, p. 199-204 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Co-diversification of an intestinal Mycoplasma and its salmonid host

    Rasmussen, Jacob Agerbo, Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Probabilistic modelling in genomics

    Rasmussen, Malthe Sebro, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 158 p.

    Research output: Book/Report › Ph.D. thesis › Research

  55. Published

    Hepatic PGC-1α has minor regulatory effect on the liver transcriptome and metabolome during high fat high fructose diet and exercise training

    Rasmussen, M. K., Thøgersen, R., Horsbøl Lindholm, P., Bertram, H. C. & Pilegaard, Henriette, 2023, In: Gene. 851, 14 p., 147039.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Xenobiotic Exposure and Migraine-Associated Signaling: A Multimethod Experimental Study Exploring Cellular Assays in Combination with Ex Vivo and In Vivo Mouse Models

    Rasmussen, Rikke Holm, Christensen, S. L., Callø, Kirstine, Nielsen, B. S., Rehfeld, A., Taylor-Clark, T. E., Haanes, Kristian Agmund, Taboureau, O., Audouze, K., Klærke, Dan Arne, Olesen, Jes & Kristensen, D. M., 2023, In: Environmental Health Perspectives. 131, 11, 14 p., 117003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Microbial Dynamics in Newly Diagnosed and Treatment Naive IBD Patients in the Mediterranean

    Rausch, P., Ellul, S., Pisani, A., Bang, C., Tabone, T., Cordina, C. M., Zahra, G., Franke, A. & Ellul, P., 2023, In: Inflammatory Bowel Diseases. 29, 7, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Rodent behavior following a dural inflammation model with anti-CGRP migraine medication treatment

    Reducha, Philip Victor, Bömers, J. P., Edvinsson, L. & Haanes, Kristian Agmund, 2023, In: Frontiers in Neurology. 14, 13 p., 1082176.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Bi-directional interactions between anti-diabetics and human gut microbiota

    Ren, H., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.

    Research output: Book/Report › Ph.D. thesis › Research

  60. Published

    National records of 3000 European bee and hoverfly species: A contribution to pollinator conservation

    Reverté, S., Miličić, M., Ačanski, J., Andrić, A., Aracil, A., Aubert, M., Balzan, M. V., Bartomeus, I., Bogusch, P., Bosch, J., Budrys, E., Cantú-Salazar, L., Castro, S., Cornalba, M., Demeter, I., Devalez, J., Dorchin, A., Dufrêne, E., Đorđević, A., Fisler, L. & 87 others, Fitzpatrick, Ú., Flaminio, S., Földesi, R., Gaspar, H., Genoud, D., Geslin, B., Ghisbain, G., Gilbert, F., Gogala, A., Grković, A., Heimburg, H., Herrera-Mesías, F., Jacobs, M., Janković Milosavljević, M., Janssen, K., Jensen, J. K., Ješovnik, A., Józan, Z., Karlis, G., Kasparek, M., Kovács-Hostyánszki, A., Kuhlmann, M., Le Divelec, R., Leclercq, N., Likov, L., Litman, J., Ljubomirov, T., Madsen, Henning Bang, Marshall, L., Mazánek, L., Milić, D., Mignot, M., Mudri-Stojnić, S., Müller, A., Nedeljković, Z., Nikolić, P., Ødegaard, F., Patiny, S., Paukkunen, J., Pennards, G., Pérez-Bañón, C., Perrard, A., Petanidou, T., Pettersson, L. B., Popov, G., Popov, S., Praz, C., Prokhorov, A., Quaranta, M., Radchenko, V. G., Radenković, S., Rasmont, P., Rasmussen, C., Reemer, M., Ricarte, A., Risch, S., Roberts, S. P. M., Rojo, S., Ropars, L., Rosa, P., Ruiz, C., Sentil, A., Shparyk, V., Smit, J., Sommaggio, D., Soon, V., Ssymank, A., Ståhls, G., Stavrinides, M., Straka, J., Tarlap, P., Terzo, M., Tomozii, B., Tot, T., van der Ent, L. J., van Steenis, J., van Steenis, W., Varnava, A. I., Vereecken, N. J., Veselić, S., Vesnić, A., Weigand, A., Wisniowski, B., Wood, T. J., Zimmermann, D., Michez, D. & Vujić, A., 2023, In: Insect Conservation and Diversity. 16, 6, p. 758-775 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Fine-scale mapping of physicochemical and microbial landscapes of the coral skeleton

    Ricci, F., Tandon, K., Moßhammer, Maria, Cho, E. H. J., Blackall, L. L., Kühl, Michael & Verbruggen, H., 2023, In: Environmental Microbiology. 25, 8, p. 1505-1521 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Uncertainty-aware and explainable machine learning for early prediction of battery degradation trajectory

    Rieger, L. H., Flores, E., Nielsen, K. F., Norby, P., Ayerbe, E., Winther, Ole, Vegge, T. & Bhowmik, A., 2023, In: Digital Discovery. 2, 1, p. 112-122 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Seasonal and Elevational Variability in Dwarf Birch VOC Emissions in Greenlandic Tundra

    Rieksta, Jolanta, Li, Tao, Davie-Martin, Cleo Lisa, Simin, Tihomir, Brogaard Aeppli, L. C., Høye, T. T., Rasmussen, Morten Arendt & Rinnan, Riikka, 2023, In: Journal of Geophysical Research: Biogeosciences. 128, 11, 17 p., e2023JG007475.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Volatile responses of dwarf birch to mimicked insect herbivory and experimental warming at two elevations in Greenlandic tundra

    Rieksta, Jolanta, Li, T., Davie-Martin, Cleo Lisa, Aeppli, L. C. B., Høye, T. T. & Rinnan, Riikka, 2023, In: Plant-Environment Interactions. 4, 1, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    A single-chain variable fragment selected against a conformational epitope of a recombinantly produced snake toxin using phage display

    Rimbault, C., Knudsen, P. D., Damsbo, A., Boddum, K., Ali, H., Hackney, Celeste Menuet, Ellgaard, Lars, Bohn, M. & Laustsen, A. H., 2023, In: New Biotechnology. 76, p. 23-32 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Impact of Aging and Lifelong Exercise Training on Mitochondrial Function and Network Connectivity in Human Skeletal Muscle

    Jørgensen, Stine Ringholm, Gudiksen, Anders, Halling, Jens Frey, Qoqaj, A., Rasmussen, P. M., Prats Gavalda, Clara, Plomgaard, Peter Stendahl & Pilegaard, Henriette, 2023, In: Journals of Gerontology. Series A: Biological Sciences & Medical Sciences. 78, 3, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Pervasive incomplete lineage sorting illuminates speciation and selection in primates

    Rivas-González, I., Rousselle, M., Li, F., Zhou, L., Dutheil, J. Y., Munch, K., Shao, Y., Wu, D., Schierup, M. H. & KU, thw266, 2023, In: Science (New York, N.Y.). 380, 6648, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Potential usages of A-to-I RNA editing patterns as diagnostic biomarkers

    Rodriguez Morales, D., Ilieva, M., Rennie, Sarah & Uchida, S., 2023, In: American journal of physiology. Cell physiology. 324, 4, p. C837-C842 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  69. Published

    The infant gut virome is associated with preschool asthma risk independently of bacteria

    Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    The impacts of the oil palm expansion on freshwater biodiversity and ecosystem functioning: The role of riparian buffers in mitigating stream biodiversity loss

    Rojas, Oscar, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 171 p.

    Research output: Book/Report › Ph.D. thesis › Research

  71. Published

    Drivers and ecology of Ceratium furcoides invasion of a Brazilian subtropical reservoir and its interaction with the phytoplankton community

    Rojas-Castillo, O. A., Pereira, L., Buffon, P. & de Souza Cardoso, L., 2023, In: Limnologica. 101, 13 p., 126080.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Forest buffer-strips mitigate the negative impact of oil palm plantations on stream communities

    Rojas-castillo, O. A., Kepfer Rojas, Sebastian, Vargas, N. & Jacobsen, Dean, 2023, In: Science of the Total Environment. 873, 12 p., 162259.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Chronic acidosis rewires cancer cell metabolism through PPARα signaling

    Rolver, M. G., Holland, L. K. K., Ponniah, M., Prasad, N. S., Yao, Jiayi, Schnipper, J., Kramer, S., Elingaard-Larsen, L., Pedraz-Cuesta, E., Liu, B., Pardo, L. A., Maeda, K., Sandelin, Albin Gustav & Pedersen, Stine Helene Falsig, 2023, In: International Journal of Cancer. 152, 8, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Effects of acid-adaptation on cancer cell acid-base regulation, metabolism and stemness

    Rolver, M. G., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 190 p.

    Research output: Book/Report › Ph.D. thesis › Research

  75. Published

    Community dynamics and co-occurrence relationships of pelagic ciliates and their potential prey at a coastal and an offshore station in the ultra-oligotrophic Eastern Mediterranean Sea

    Romano, F., Pitta, P. & John, U., 2023, In: Frontiers in Genetics. 14, 15 p., 1219085.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Folding of heterologous proteins in bacterial cell factories: Cellular mechanisms and engineering strategies

    Rong, Y., Jensen, S. I., Lindorff-Larsen, Kresten & Nielsen, A. T., 2023, In: Biotechnology Advances. 63, 21 p., 108079.

    Research output: Contribution to journal › Review › Research › peer-review

  77. E-pub ahead of print

    A novel protocol for rapid deployment of heart rate data storage tags in Atlantic bluefin tuna Thunnus thynnus reveals cardiac responses to temperature and feeding

    Rouyer, T., Bonhommeau, S., Bernard, S., Kerzerho, V., Derridj, O., Bjarnason, Allal, H., Steffensen, John Fleng, Deguara, S., Wendling, B., Bal, G., Thambithurai, D. & Mckenzie, D. J., 2023, (E-pub ahead of print) In: Journal of Fish Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Full activation of thermogenesis in brown adipocytes requires Basigin action

    Rupar, K., Isidor, Marie Sophie, Argemi Muntadas, Lidia, Agueda Oyarzabal, Marina, Plucinska, Kaja, Brown, E. L., Mattanovich, M., Bossi, Simone, Tozzi, M., Tandio, David, Petersen, P. S. S., Henriksen, T. I., Trošt, K., Hansen, Jacob B., Gerhart-Hines, Zach, Nielsen, S., Moritz, Thomas & Emanuelli, Brice, 2023, In: F E B S Journal. 290, 10, p. 2673-2691

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Physiological effects of temperature on Greenland halibut Reinhardtius hippoglossoides shows high vulnerability of Arctic stenotherms to global warming

    Ruth, A., Svendsen, M. B. S., Nygaard, R., Christensen, E. A. F., Bushnell, P. G. & Steffensen, John Fleng, 2023, In: Journal of Fish Biology. 103, 3, p. 675-683 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Genes with epigenetic alterations in human pancreatic islets impact mitochondrial function, insulin secretion, and type 2 diabetes

    Rönn, T., Ofori, J. K., Perfilyev, A., Hamilton, Alexander, Pircs, K., Eichelmann, F., Garcia-Calzon, S., Karagiannopoulos, A., Stenlund, H., Wendt, A., Volkov, P., Schulze, M. B., Mulder, H., Eliasson, L., Ruhrmann, S., Bacos, K. & Ling, C., 2023, In: Nature Communications. 14, 1, 21 p., 8040.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms – an example from dairy isolates

    Sadiq, F. A., De Reu, K., Steenackers, H., Van De Walle, A., Burmølle, Mette & Heyndrickx, M., 2023, In: ISME communications. 3, 1, 12 p., 118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Synergistic interactions in multispecies biofilm combinations of bacterial isolates recovered from diverse food processing industries

    Sadiq, F. A., De Reu, K., Burmølle, Mette, Maes, S. & Heyndrickx, M., 2023, In: Frontiers in Microbiology. 14, 13 p., 1159434.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Impact of varying levels of mental stress on phase information of EEG Signals: A study on the Frontal, Central, and parietal regions

    Saffari, F., Norouzi, K., Bruni, L. E., Zarei, S. & Ramsøy, T. Z., 2023, In: Biomedical Signal Processing and Control. 86, Part B, 8 p., 105236.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Advances in mass spectrometry to unravel the structure and function of protein condensates

    Sahin, Cagla, Leppert, A. & Landreh, M., 2023, In: Nature Protocols. 18, p. 3653–3661 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Mass Spectrometry of RNA-Binding Proteins during Liquid-Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures

    Sahin, Cagla, Motso, A., Gu, X., Feyrer, H., Lama, D., Arndt, T., Rising, A., Gese, G. V., Haellberg, B. M., Marklund, E. G., Schafer, N. P., Petzold, K., Teilum, Kaare, Wolynes, P. G. & Landreh, M., 2023, In: Journal of the American Chemical Society. 145, 19, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

    Sahu, N., Indic, B., Wong-Bajracharya, J., Merényi, Z., Ke, H. M., Ahrendt, S., Monk, T. L., Kocsubé, S., Drula, E., Lipzen, A., Bálint, B., Henrissat, B., Andreopoulos, B., Martin, F. M., Bugge Harder, C., Rigling, D., Ford, K. L., Foster, G. D., Pangilinan, J., Papanicolaou, A. & 14 others, Barry, K., LaButti, K., Virágh, M., Koriabine, M., Yan, M., Riley, R., Champramary, S., Plett, K. L., Grigoriev, I. V., Tsai, I. J., Slot, J., Sipos, G., Plett, J. & Nagy, L. G., 2023, In: Nature Microbiology. 8, 27 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis)

    Sahu, S. K., Liu, M., Chen, Y., Gui, J., Fang, D., Chen, X., Yang, T., He, C., Cheng, L., Yang, J., Sahu, D. N., Li, L., Wang, H., Mu, W., Wei, J., Liu, J., Zhao, Y., Zhang, S., Lisby, M., Liu, X. & 4 others, Xu, X., Li, L., Wang, S. & Liu, Huan, 2023, In: Scientific Data. 10, 1, 13 p., 512.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Chromosome-scale genomes of commercially important mahoganies, Swietenia macrophylla and Khaya senegalensis

    Sahu, S. K., Liu, M., Wang, G., Chen, Y., Li, R., Fang, D., Sahu, D. N., Mu, W., Wei, J., Liu, J., Zhao, Y., Zhang, S., Lisby, Michael, Liu, X., Xu, X., Li, L., Wang, S., Liu, Huan & He, C., 2023, In: Scientific Data. 10, 9 p., 832.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Composition and distribution of diazotrophs in the Baltic Sea

    Salamon Slater, E. R., Turk-kubo, K. A., Hallstrøm, S., Kesy, K., Laas, P., Magasin, J., Zehr, J. P., Labrenz, M. & Riemann, Lasse, 2023, In: Estuarine, Coastal and Shelf Science. 294, 12 p., 108527.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    A “grappling hook” interaction connects self-assembly and chaperone activity of Nucleophosmin 1

    Saluri, M., Leppert, A., Gese, G. V., Sahin, Cagla, Lama, D., Kaldmäe, M., Chen, G., Elofsson, A., Allison, T. M., Arsenian-henriksson, M., Johansson, J., Lane, D. P., Hällberg, B. M. & Landreh, M., 2023, In: PNAS Nexus. 2, 2, 9 p., pgac303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Marsico, A., Winther, Ole & Andersson, Robin, 2023, In: NAR Genomics and Bioinformatics. 5, 2, 10 p., 026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds

    Salvà-Serra, F., Pérez-Pantoja, D., Donoso, R. A., Jaén-Luchoro, D., Fernandez Juarez, Victor, Engström-Jakobsson, H., Moore, E. R. B., Lalucat, J. & Bennasar-Figueras, A., 2023, In: Frontiers in Microbiology. 14, 19 p., 1159176.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Heterogeneous vasomotor responses in segments from Göttingen Minipigs coronary, cerebral, and mesenteric artery: A comparative study

    Nielsen, Anette Sams, Haanes, Kristian Agmund, Holm, A., Kazantzi, Spyridoula, Mikkelsen, L. F., Edvinsson, L., Brain, S. & Sheykhzade, Majid, 2023, In: Vascular Pharmacology. 153, 107231.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    The Influence of Body Size on Behavioral Thermal Preference in Atlantic Cod (Gadus morhua): Larger Fish Favor Colder Waters

    Schakmann, M., Christensen, E. A. F., Steffensen, John Fleng & Svendsen, M. B. S., 2023, In: Fishes. 8, 12, 11 p., 596.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Abrupt permafrost thaw triggers activity of copiotrophs and microbiome predators

    Scheel, M., Zervas, A., Rijkers, R., Tveit, A. T., Ekelund, Flemming, Campuzano Jiménez, F., Christensen, T. R. & Jacobsen, C. S., 2023, In: FEMS Microbiology Ecology. 99, 11, 12 p., fiad123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Molecular Regulation of SpoT

    Schicketanz, Muriel Leandra, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 190 p.

    Research output: Book/Report › Ph.D. thesis › Research

  97. Published

    Sequential analysis of δ15N in guard hair suggests late gestation is the most critical period for muskox calf recruitment

    Schmidt, N. M., Michelsen, Anders, Hansen, L. H., Aggerbeck, M. R., Stelvig, M., Kutz, S. & Mosbacher, J. B., 2023, In: Rapid Communications in Mass Spectrometry. 37, 6, 7 p., e9470.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Make the environment protect you from disease: elevated CO2 inhibits antagonists of the fungus-farming termite symbiosis

    Schmidt, Suzanne, Bos, N., Murphy, R., Koné, N. A., Silué, K. S., Meyling, Nicolai Vitt & Poulsen, Michael, 2023, In: Frontiers in Ecology and Evolution. 11, 9 p., 1134492.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    The Chemical Ecology and Defence of the Fungus-Farming Termite Symbiosis

    Schmidt, Suzanne, 2023, Section for Ecology and Evolution, Department of Biology, University of Copenhagen. 252 p.

    Research output: Book/Report › Ph.D. thesis › Research

  100. Published

    Vandkraft Versus Vandmiljø: Et opløftende eksempel fra De italienske Alper

    Scotti, A., Bottarin, R. & Jacobsen, Dean, 2023, In: Aktuel Naturvidenskab. 4, p. 38-42 5 p.

    Research output: Contribution to journal › Journal article › Communication

  101. Published

    Local adaptation through countergradient selection in northern populations of Skeletonema marinoi

    Sefbom, J., Kremp, A., Hansen, Per Juel, Johannesson, K., Godhe, A. & Rengefors, K., 2023, In: Evolutionary Applications. 16, 2, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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