Department of Biology

 

 
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  1. Published

    Hypoxia as a physiological cue and pathological stress for coral larvae

    Alderdice, R., Pernice, M., Cárdenas, A., Hughes, D. J., Harrison, P. L., Boulotte, N., Chartrand, K., Kühl, Michael, Suggett, D. J. & Voolstra, C. R., 2022, In: Molecular Ecology. 31, 2, p. 571-587 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Disparate Inventories of Hypoxia Gene Sets Across Corals Align With Inferred Environmental Resilience

    Alderdice, R., Hume, B. C. C., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Frontiers in Marine Science. 9, 14 p., 834332.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Divergent expression of hypoxia response systems under deoxygenation in reef-forming corals aligns with bleaching susceptibility

    Alderdice, R., Suggett, D. J., Cárdenas, A., Hughes, D. J., Kühl, Michael, Pernice, M. & Voolstra, C. R., 2021, In: Global Change Biology. 27, 2, p. 312-326 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Deoxygenation lowers the thermal threshold of coral bleaching: [Inkl. Correction]

    Alderdice, R., Perna, G., Cárdenas, A., Hume, B. C. C., Wolf, M., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Scientific Reports. 12, 14 p., 18273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Analysis of the behaviours mediating barnacle cyprid reversible adhesion

    Aldred, N., Høeg, Jens Thorvald, Maruzzo, D. & Clare, A. S., 2013, In: P L o S One. 8, 7, 10 p., e68085.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Genome editing in archaeal viruses and endogenous viral protein purification

    Alfastsen, L., Peng, Xu & Bhoobalan, Yuvaraj, 2021, In: STAR Protocols. 2, 4, 27 p., 100791.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Will climate change affect outbreak patterns of planthoppers in Bangladesh?

    Ali, M. P., Huang, D., Nachman, Gøsta Støger, Ahmed, N., Begum, M. A. & Rabbi, M. F., 2014, In: P L o S One. 9, 3, 10 p., e91678.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization

    Ali, Z., Mukwaya, A., Biesemeier, A., Ntzouni, M., Ramsköld, D., Giatrellis, S., Mammadzada, P., Cao, R., Lennikov, A., Marass, M., Gerri, C., Hildesjö, C., Taylor, M., Deng, Q., Peebo, B., del Peso, L., Kvanta, A., Sandberg, R., Schraermeyer, U., Andre, H. & 5 others, Steffensen, John Fleng, Lagali, N., Cao, Y., Kele, J. & Jensen, L. D., 2019, In: Arteriosclerosis, Thrombosis, and Vascular Biology. 39, 7, p. 1402-1418

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Characterizing leader sequences of CRISPR loci

    Alkhnbashi, O., Shah, S. A., Garrett, Roger Antony, Saunders, S. J., Costa, F. & Backofen, R., 2016, In: Bioinformatics. 32, 17, p. i576-i585 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

    Alkhnbashi, O. S., Costa, F., Shah, S. A., Garrett, Roger Antony, Saunders, S. J. & Backofen, R., 2014, In: Bioinformatics. 30, 17, p. i489-i496 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Extinct New Zealand megafauna were not in decline before human colonization

    Allentoft, Morten Erik, Heller, Rasmus, Oskam, C. L., Lorenzen, Eline, Hale, M. L., Gilbert, M Thomas P, Jacomb, C., Holdaway, R. N. & Bunce, M., 2014, In: Proceedings of the National Academy of Sciences USA (PNAS). 111, 13, p. 4922-4927 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Microsatellite analysis of the natterjack toad (Bufo calamita) in Denmark: populations are islands in a fragmented landscape

    Allentoft, Morten Erik, Siegismund, Hans Redlef, Briggs, L. & Andersen, L. W., 2009, In: Conservation Genetics. 10, 1, p. 15-28

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Ancient DNA microsatellite analyses of the extinct New Zealand giant moa (Dinornis robustus) identify relatives within a single fossil site

    Allentoft, Morten Erik, Heller, Rasmus, Holdaway, R. N. & Bunce, M., 2015, In: Heredity. 115, p. 481-487 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Muscular adaptations in swimming scale worms (Polynoidae, Annelida)

    Allentoft-Larsen, M. C., Gonzalez, B. C., Daniels, J., Katija, K., Osborn, K. & Worsaae, Katrine, 2021, In: Royal Society Open Science. 8, 10, 22 p., 210541.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Aberrant intestinal microbiota in individuals with prediabetes

    Allin, K. H., Tremaroli, V., Caesar, R., Jensen, Benjamin Anderschou Holbech, Damgaard, Mads Vargas, Bahl, M. I., Licht, T. R., Hansen, T. H., Nielsen, T., Dantoft, T. M., Linneberg, Allan René, Jørgensen, T., drb459, drb459, Kristiansen, Karsten, Franks, P. W., IMI-DIRECT consortium, I. C., Hansen, Torben, Bäckhed, G. F. & Pedersen, Oluf Borbye, Apr 2018, In: Diabetologia. 61, 4, p. 810-820 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Detecting sequence signals in targeting peptides using deep learning

    Almagro Armenteros, J. J., Salvatore, Marco, Emanuelsson, O., Winther, Ole, von Heijne, G., Elofsson, A. & Nielsen, H., 2019, In: Life Science Alliance. 2, 5, 14 p., 201900429.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    DeepLoc: prediction of protein subcellular localization using deep learning

    Almagro Armenteros, J. J., Sønderby, C. K., Sønderby, S. K., Nielsen, H. & Winther, Ole, 1 Nov 2017, In: Bioinformatics. 33, 21, p. 3387-3395 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds

    Almeida, D., Maldonado, E., Khan, I., Silva, L., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2016, In: Genome Biology and Evolution. 8, 4, p. 1115-1131 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Spontaneous metastasis in congenic mice with transgenic breast cancer is unaffected by plasminogen gene ablation

    Almholt, K., Juncker-Jensen, A., Lærum, O. D., Johnsen, M., Rømer, J. & Lund, L. R., 2013, In: Clinical and Experimental Metastasis. 30, 3, p. 277-288 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Metastasis is strongly reduced by the matrix metalloproteinase inhibitor Galardin in the MMTV-PymT transgenic breast cancer model

    Almholt, K., Juncker-Jensen, A., Lærum, O. D., Danø, K. B., Johnsen, M., Lund, L. R. & Rømer, J., 2008, In: Molecular Cancer Therapeutics. 7, 9, p. 2758-2767 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    From embryonic stem cells to testicular germ cell cancer-- should we be concerned?

    Almstrup, Kristian, Sonne, Si Brask, Hoei-Hansen, C. E., Ottesen, A. M., Nielsen, J. E., Skakkebæk, Niels Erik, Leffers, H. & Rajpert-De Meyts, E., 2006, In: International Journal of Andrology. 29, 1, p. 211-8 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Analysis of cell-type-specific gene expression during mouse spermatogenesis

    Almstrup, Kristian, Nielsen, J. E., Hansen, M. A., Tanaka, M., Skakkebæk, Niels Erik & Leffers, H., Jun 2004, In: Biology of Reproduction. 70, 6, p. 1751-1761 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Improved gene expression signature of testicular carcinoma in situ

    Almstrup, Kristian, Leffers, H., Lothe, R. A., Skakkebæk, Niels Erik, Sonne, Si Brask, Nielsen, J. E., Rajpert-De Meyts, E. & Skotheim, R. I., 2007, In: International Journal of Andrology. 30, 4, p. 292-303

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Genomic and gene expression signature of the pre-invasive testicular carcinoma in situ

    Almstrup, Kristian, Ottesen, A. M., Sonne, Si Brask, Hoei-Hansen, C. E., Leffers, H., Rajpert-De Meyts, E. & Skakkebæk, Niels Erik, 2005, In: Cell and Tissue Research. 322, 1, p. 159-65 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes

    Alneberg, J., Bennke, C., Beier, S., Bunse, C., Quince, C., Ininbergs, K., Riemann, Lasse, Ekman, M., Jürgens, K., Labrenz, M., Pinhassi, J. & Andersson, A. F., 2020, In: Communications Biology. 3, 10 p., 119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea

    Alneberg, J., Sundh, J., Bennke, C., Beier, S., Lundin, D., Hugerth, L. W., Pinhassi, J., Kisand, V., Riemann, Lasse, Jürgens, K., Labrenz, M. & Andersson, A. F., 2018, In: Scientific Data. 5, 10 p., 180146.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Whole-stream metabolism in nutrient-poor calcareous streams on Öland, Sweden

    Alnøe, A. B., Riis, T., Andersen, M. R., Baattrup-Pedersen, A. & Sand-Jensen, Kaj, 2015, In: Aquatic Sciences. 77, 2, p. 207-219 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Implementing novel glycan arrays in analyzing changes in polysaccharide composition due to hydrothermal pretreatments

    Alonso Simon, A., Jørgensen, H., Øbro, J., Kristensen, J. B., Felby, C. & Willats, W. G. T., 2008.

    Research output: Contribution to conference › Conference abstract for conference › Research

  29. Published

    High-throughput microarray profiling of cell wall polymers during hydrothermal pre-treatment of wheat straw

    Alonso Simon, A., Kristensen, J. B., Øbro, J., Felby, C., Jørgensen, H. & Willats, W. G. T., 2010, In: Biotechnology and Bioengineering (Print). 105, 3, p. 509-514 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Role for urea in nitrification by polar marine Archaea

    Alonso-Sáez, L., Waller, A. S., Mende, D. R., Bakker, K., Farnelid, H., Yager, P. L., Lovejoy, C., Tremblay, J., Potvin, M., Heinrich, F., Estrada, M., Riemann, Lasse, Bork, P., Pedrós-Alió, C. & Bertilsson, S., 2012, In: Proceedings of the National Academy of Sciences USA (PNAS). 109, 44, p. 17989-17994 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    A family of conserved bacterial virulence factors dampens interferon responses by blocking calcium signaling

    Alphonse, N., Wanford, J. J., Voak, A. A., Gay, J., Venkhaya, S., Burroughs, O., Mathew, S., Lee, T., Evans, S. L., Zhao, W., Frowde, K., Alrehaili, A., Dickenson, R. E., Munk, M., Panina, S., Mahmood, I. F., Llorian, M., Stanifer, M. L., Boulant, S., Berchtold, M. W. & 4 others, Bergeron, J. R. C., Wack, A., Lesser, C. F. & Odendall, C., 2022, In: Cell. 185, 13, p. 2354-2369.e17

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Urokinase plasminogen activator receptor is expressed in invasive cells in gastric carcinomas from high- and low-risk countries

    Alpizar Alpizar, W. E., Nielsen, B. S., Sierra, R., Illemann, M., Ramírez, J. A., Arias, A., Durán, S., Skarstein, A., Ovrebo, K., Lund, L. R. & Laerum, O. D., 2010, In: International Journal of Cancer. 126, 2, p. 405-415 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Geographical variation in host-ant sepcificity of the parasitic butterfly Maculinea alcon in Denmark

    Als, T. D., Nash, D. R. & Boomsma, Jacobus J., 2002, In: Ecological Entomology. 27, p. 403-414

    Research output: Contribution to journal › Journal article › Research

  34. Published

    The evolution of alternative parasitic life histories in large blue butterflies

    Als, T. D., Vila, R., Kandul, N. P., Nash, David Richard, Yen, S., Hsu, Y., Mignault, A. A., Boomsma, Jacobus J. & Pierce, N. E., 2004, In: Nature. 432, 7015, p. 386-390 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Geographical variation in host-ant specificity of the parasitic butterfly Maculinea alcon in Denmark

    Als, T. D., Nash, David Richard & Boomsma, Jacobus J., 1 Aug 2002, In: Ecological Entomology. 27, p. 403-414 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Adoption of parasitic Maculinea alcon caterpillars (Lepidoptera : Lycaenidae) by three Myrmica ant species

    Als, T. D., Nash, David Richard & Boomsma, Jacobus J., 1 Jul 2001, In: Animal Behaviour. 62, p. 99-106 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Boganmeldelse: Timdal, E. 1991: A monograph of the Genus Toninia

    Alstrup, V., 1992, In: Graphis Scripta. 4, p. 37-3839-43

    Research output: Contribution to journal › Journal article › Research

  38. Published

    Pesticidanvendelsens indvirken på lavfloraen på sten

    Alstrup, V., 1991, København: Institut for Økologisk Botanik. 33 p.

    Research output: Book/Report › Book › Research

  39. Published

    Dimelaena somaliensis sp.nov. with notes on lichens from Somalia

    Alstrup, V. & Aptroot, A., 1994, In: Cryptogamie, Bryologie, Lichenologie. 15, p. 205-209

    Research output: Contribution to journal › Journal article › Research

  40. Published

    Additions to the lichens and lichenicolous fungi of Denmark 8

    Alstrup, V., Søchting, Ulrik, Dragsholt, C., Læssøe, Thomas, Thell, A. & Kukwa, M., 2013, In: Graphis Scripta. 25, 2, p. 56-63 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Additions to the Lichen Flora of the Polish Tatra Mountains III

    Alstrup, V. & Olech, M., 1992, In: Zeszyty Naukowe Uniwersytetu Jagiellonskiego, Prace Botaniczne. 24, p. 179-184

    Research output: Contribution to journal › Journal article › Research

  42. Published

    Ceased grazing: The consequences of overgrowing on the flora of soil and stone inhabiting lichens

    Alstrup, V., 1992, In: International Journal of Mycology and Lichenology. 5, p. 1-2

    Research output: Contribution to journal › Journal article › Research

  43. Published

    Notes on the lichen flora of Denmark IV

    Alstrup, V., Christensen, S., Christiansen, M. S., Jacobsen, P., Poulsen, R., Søchting, Ulrik & Svane, S., 1990, In: Graphis Scripta.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    In situ cryo-subfossil vegetation in northwest Greenland

    Alstrup, V., 1995, In: Cryptogamic Botany. 5, p. 172-176

    Research output: Contribution to journal › Journal article › Research

  45. Published

    News on lichens and lichenicolous fungi from the Nordic Countries

    Alstrup, V., 1993, In: Graphis Scripta. 5, p. 96-104

    Research output: Contribution to journal › Journal article › Research

  46. Published

    Boganmeldelse: Purvis, O. W., Coppins, B. J., Hawksworth, D. L., James, P. W. & Moore, D. M. (eds): The Lichen Flora of Great Britain and Ireland

    Alstrup, V., 1993, In: Graphis Scripta. 5, p. 92

    Research output: Contribution to journal › Journal article › Research

  47. Published

    Lichenicolous fungi from Spitsbergen

    Alstrup, V. & Olech, M., 1994, In: Polish Polar Research. 14, p. 33-42

    Research output: Contribution to journal › Journal article › Research

  48. Published

    Årets fund 2013 og 2014 Laver

    Alstrup, V. & Søchting, Ulrik, 2015, In: URT. 39, 1, p. 23-24 2 p.

    Research output: Contribution to journal › Journal article › Communication

  49. Published

    Collect with a tape

    Alstrup, V., 1991, In: Graphis Scripta. 3(2), p. 77-8

    Research output: Contribution to journal › Journal article › Research

  50. Published

    Tre nye laver i Danmark

    Alstrup, V., 1991, In: Graphis Scripta. 3, p. 106-107

    Research output: Contribution to journal › Journal article › Research

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