Department of Biology

 

 
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  1. 2022
  2. Published

    The coupling between irradiance, growth, photosynthesis and prymnesin cell quota and production in two strains of the bloom-forming haptophyte, Prymnesium parvum

    Medic, Nikola, Varga, E., van der Waal, D. B., Larsen, T. O. & Hansen, Per Juel, 2022, In: Harmful Algae. 112, 8 p., 102173.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Grand Challenges in Coevolution

    Medina, M., Baker, D. M., Baltrus, D. A., Bennett, G. M., Cardini, U., Correa, A. M. S., Degnan, S. M., Christa, G., Kim, E., Li, J., Nash, David Richard, Marzinelli, E., Nishiguchi, M., Prada, C., Roth, M. S., Saha, M., Smith, C. I., Theis, K. R. & Zaneveld, J., 2022, In: Frontiers in Ecology and Evolution. 9, 11 p., 618251.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Haplotype and population structure inference using neural networks in whole-genome sequencing data

    Meisner, Jonas & Albrechtsen, Anders, 2022, In: Genome Research. 32, 8, p. 1542-1552 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Dietary Selenomethionine Reduce Mercury Tissue Levels and Modulate Methylmercury Induced Proteomic and Transcriptomic Alterations in Hippocampi of Adolescent BALB/c Mice

    Mellingen, R. M., Myrmel, L. S., Rasinger, J. D., Lie, K. K., Bernhard, A., Madsen, L. & Nostbakken, O. J., 2022, In: International Journal of Molecular Sciences. 23, 20, 19 p., 12242.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Phospholipids alter activity and stability of mitochondrial membrane-bound ubiquitin ligase MARCH5

    Merklinger, L., Bauer, J., Pedersen, Per Amstrup, Damgaard, R. B. & Morth, J. P., 2022, In: Life Science Alliance. 5, 8, 13 p., e202101309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions

    Rodríguez Mestre, Mario, Gao, L. A., Shah, S. A., López-Beltrán, A., González-Delgado, A., Martínez-Abarca, F., Iranzo, J., Redrejo-Rodríguez, M., Zhang, F. & Toro, N., 24 Jun 2022, In: Nucleic Acids Research. 50, 11, p. 6084-6101 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, Lars Hestbjerg, Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, Jakob Nybo, Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, Simon, Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, Søren Johannes, Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 2022, In: Nature Methods. 19, 4, p. 429-440

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases

    Mohammadi, S., Özdemir, H. İ., Ozbek, P., Sumbul, F., Stiller, Josefin, Deng, Y., Crawford, A. J., Rowland, H., Storz, J., Andolfatto, P. & Dobler, S., 2022, In: Molecular Biology and Evolution. 39, 12, 13 p., msac258.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Angiomotin isoform 2 promotes binding of PALS1 to KIF13B at primary cilia and regulates ciliary length and signaling

    Morthorst, Stine Kjær, Nielsen, C., Farinelli, P., Anvarian, Zeinab, Rasmussen, C. B. R., Serra-Marques, A., Grigoriev, I., Altelaar, M., Fürstenberg, N., Ludwig, A., Akhmanova, A., Christensen, Søren Tvorup & Pedersen, Lotte Bang, 2022, In: Journal of Cell Science. 135, 12, 10 p., jcs259471.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Hair mineral levels as indicator of wildlife demographics? a pilot study of muskoxen

    Mosbacher, J. B., Desforges, J., Michelsen, Anders, V. Hansson, S., Stelvig, M., Eulaers, I., Sonne, C., Dietz, R., Jenssen, B. M., Ciesielski, T. M., Lierhagen, S., Flaten, T. P., Le Roux, G., Aggerbeck, M. R. & Schmidt, N. M., 2022, In: Polar Research. 41, 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Differential expression of the three independent CaM genes coding for an identical protein: Potential relevance of distinct mRNA stability by different codon usage

    Munk, M., Villalobo, E., Villalobo, A. & Berchtold, Martin Werner, 2022, In: Cell Calcium. 107, 20 p., 102656.

    Research output: Contribution to journal › Review › Research › peer-review

  13. Published

    Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription: [Corrigendum]

    Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Neves, R. C., Jørgensen, Aslak, Schiøtt, M., Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 271, 8 p., 111245.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Formation and degeneration of scaled capillary notochaetae in Owenia fusiformis Delle Chiaje, 1844 (Oweniidae, Annelida)

    Müller, J., Bartolomaeus, T. & Tilic, E., 2022, In: Zoomorphology. 141, 1, p. 43-56 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A review on ethnobotany, phytochemistry, and pharmacology of the genus Didymocarpus wall. (Gesneriaceae)

    Nanjala, C., Odago, W. O., Rono, P. C., Waswa, E. N., Mutinda, E. S., Oulo, M. A., Muema, F. W., Wanga, V. O., Mkala, E. M., Kuja, J., Njire, M. M. & Hu, G. W., 2022, In: Journal of Ethnopharmacology. 295, 25 p., 115404.

    Research output: Contribution to journal › Review › Research › peer-review

  16. Published

    Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis

    Nanjala, C., Wanga, V. O., Odago, W., Mutinda, E. S., Waswa, E. N., Oulo, M. A., Mkala, E. M., Kuja, J., Yang, J., Dong, X., Hu, G. & Wang, Q., 2022, In: BMC Plant Biology. 22, 22 p., 387.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Bioinformatics of transcription factor binding prediction

    Navarro-Delgado, E. I., Salgado-Albarrán, M., Torres-Arciga, K., Alcaraz, N., Soto-Reyes, E., Herrera, L. A. & González-Barrios, R., 2022, Bioinformatics and Human Genomics Research. CRC Press, p. 203-221 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  18. Published

    Influence of increased nutrient availability on biogenic volatile organic compound (BVOC) emissions and leaf anatomy of subarctic dwarf shrubs under climate warming and increased cloudiness

    Ndah, F., Valolahti, H., Schollert, M., Michelsen, Anders, Rinnan, Riikka & Kivimäenpää, M., 2022, In: Annals of Botany. 129, 4, p. 443-455 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity

    Neumann, C., Rosenbæk, L. L., Flygaard, R. K., Habeck, M., Karlsen, J. L., Wang, Y., Lindorff-Larsen, Kresten, Gad, H. H., Hartmann, R., Lyons, J. A., Fenton, R. A. & Nissen, P., 2022, In: EMBO Journal. 41, 23, 15 p., e110169.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome

    Neves, R. C., Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 267, 7 p., 111169.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    How phosphorylation impacts intrinsically disordered proteins and their function

    Newcombe, Estella Anne, Delaforge, Elise, Hartmann-Petersen, Rasmus, Skriver, Karen & Kragelund, Birthe Brandt, 2022, In: Essays in Biochemistry. 66, 7, p. 901-913 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  22. Published

    Rapid Response to Experimental Warming of a Microbial Community Inhabiting High Arctic Patterned Ground Soil

    Newsham, K. K., Danielsen, Birgitte Kortegaard, Biersma, Elisabeth M., Elberling, Bo, Hillyard, G., Kumari, P., Priemé, Anders, Woo, C. & Yamamoto, N., 2022, In: Biology. 11, 12, 17 p., 1819.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Systematic position of the Clicking Frog (Kassinula Laurent, 1940), the problem of chimeric sequences and the revised classification of the family Hyperoliidae

    Nečas, T., Kielgast, J., Nagy, Z. T., Kusamba Chifundera, Z. & Gvoždík, V., 2022, In: Molecular Phylogenetics and Evolution. 174, 11 p., 107514.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin

    Nickels, Jan Fabio, Della-Rosa, M. E., Miguelez Goyeneche, I., Charlton, Sebastian Jespersen, Sneppen, Kim & Thon, Genevieve, 2022, In: Cell Reports. 39, 7, 17 p., 110828.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Effects of decadal nitrogen addition on carbon and nitrogen stocks in different organic matter fractions of typical steppe soils

    Niu, G., Liu, L., Wang, Y., Guan, H., Ning, Q., Liu, T., Rousk, Kathrin, Zhong, B., Yang, J., Lu, X., Han, X. & Huang, J., 2022, In: Ecological Indicators. 144, 9 p., 109471.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Extrachromosomal circular DNA in cancer: history, current knowledge, and methods

    Noer, Julie Boertmann, Hørsdal, O. K., Xiang, X., Luo, Y. & Regenberg, Birgitte, 2022, In: Trends in Genetics. 38, 7, p. 766-781 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  27. Published

    Increasing protein stability by inferring substitution effects from high-throughput experiments

    Norrild, R. K., Johansson, Kristoffer Enøe, O'Shea, Charlotte, Morth, J. P., Lindorff-Larsen, Kresten & Winther, Jakob R., 2022, In: Cell Reports Methods. 2, 11, 11 p., 100333.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Joint identification of sex and sex-linked scaffolds in non-model organisms using low depth sequencing data

    Nursyifa, Casia, Brüniche-Olsen, Anna, Garcia Erill, Genís, Heller, Rasmus & Albrechtsen, Anders, 2022, In: Molecular Ecology Resources. 22, 2, p. 458-467 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Polygenic heterogeneity in antidepressant treatment and placebo response

    Nøhr, A. K., Forsingdal, A., Moltke, Ida, Howes, O. D., Vitezic, M., Albrechtsen, Anders & Dalby, M., 2022, In: Translational Psychiatry. 12, 8 p., 456.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils

    Olagoke, F. K., Bettermann, A., Nguyen, P. T. B., Redmile-Gordon, M., Babin, D., Smalla, K., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K. & Vogel, C., 2022, In: Biology and Fertility of Soils. 58, 4, p. 435-457 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    (2873) Proposal to conserve the name Ceratellopsis with a conserved type (Basidiomycota: Agaricales)

    Olariaga, I., Huhtinen, S., Læssøe, Thomas, Petersen, J. H., Hansen, K. & Parra, L. A., 2022, In: Taxon. 71, 2, p. 467-468 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  32. Published

    (2874–2877) Proposals to conserve the names Typhula with a conserved type, Macrotyphula against Sclerotium, and Phyllotopsidaceae against Sclerotiaceae, and to reject the name Sclerotium fulvum (Basidiomycota: Agaricales): Agaricales)

    Olariaga, I., Huhtinen, S., Læssøe, Thomas, Petersen, J. H., Hansen, K. & Parra, L. A., 2022, In: Taxon. 71, 2, p. 468-470 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  33. Published

    IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

    Olesen, Asmus Kalckar, Pinilla Redondo, Rafael, Hansen, Mads Frederik, Russel, J., Dechesne, A., Smets, B. F., Madsen, Jonas Stenløkke, Nesme, Joseph & Sørensen, Søren Johannes, 2022, In: Molecular Ecology. 31, 5, p. 1595-1608

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Deciphering horizontal transfer of plasmids and β-lactamase protection in microbial communities

    Olesen, Asmus Kalckar, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 180 p.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    Nanofiltration as an Efficient Tertiary Wastewater Treatment: Elimination of Total Bacteria and Antibiotic Resistance Genes from the Discharged Effluent of a Full-Scale Wastewater Treatment Plant

    Oliveira, M., Leonardo, I. C., Silva, A. F., Crespo, J. G., Nunes, M. & Crespo, M. T. B., 2022, In: Antibiotics. 11, 5, 12 p., 630.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Hovedbrud i udbrud

    Olsen, Johan Gotthardt & Hendricks, Vincent F., 2022, 2. ed. København: Gad. 92 p.

    Research output: Book/Report › Book › Education

  37. Published

    Exploring farmers’ perception, knowledge, and management techniques of salt-affected soils to enhance rice production on small land holdings in Tanzania

    Omar, M. M., Shitindi, M. J., Massawe, B. H. J., Fue, K. G., Pedersen, Ole & Meliyo, J. L., 2022, In: Cogent Food and Agriculture. 8, 1, 20 p., 2140470.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Transient exposure of a buried phosphorylation site in an autoinhibited protein

    Orioli, S., Henning Hansen, C. G. & Lindorff-Larsen, Kresten, 2022, In: Biophysical Journal. 121, 1, p. 91-101 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Mass Spectrometry and Machine Learning Reveal Determinants of Client Recognition by Antiamyloid Chaperones

    Osterlund, N., Vosselman, T., Leppert, A., Graslund, A., Jornvall, H., Ilag, L. L., Marklund, E. G., Elofsson, A., Johansson, J., Sahin, Cagla & Landreh, M., 2022, In: Molecular & Cellular Proteomics. 21, 10, 10 p., 100413.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Single-Nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma

    Ou, Z., Lin, S., Qiu, J., Ding, W., Ren, P., Chen, D., Wang, J., Tong, Y., Wu, D., Chen, A., Deng, Y., Cheng, M., Peng, T., Lu, H., Yang, H., Wang, J., Jin, X., Ma, D., Xu, X., Wang, Y. & 2 others, Li, J. & Wu, P., 2022, In: Advanced Science. 9, 29, 20 p., 2203040.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Effect of naturally-occurring mutations on the stability and function of cancer-associated NQO1: Comparison of experiments and computation

    Pacheco-Garcia, J. L., Cagiada, Matteo, Tienne-Matos, K., Salido, E., Lindorff-Larsen, Kresten & L. Pey, A., 2022, In: Frontiers in Molecular Biosciences. 9, 17 p., 1063620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Ciliary flows in corals ventilate target areas of high photosynthetic oxygen production

    Pacherres, Cesar, Ahmerkamp, S., Koren, K., Richter, C. & Holtappels, M., 2022, In: Current Biology. 32, 19, p. 4150-4158.e3 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Massively targeted evaluation of therapeutic CRISPR off-targets in cells

    Pan, X., Qu, K., Yuan, H., Xiang, X., Anthon, C., Pashkova, L., Liang, X., Han, P., Corsi, G. I., Xu, F., Liu, P., Zhong, J., Zhou, Y., Ma, T., Jiang, H., Liu, J., Wang, J., Jessen, N., Bolund, L., Yang, H. & 5 others, Xu, X., Church, G. M., Gorodkin, Jan, Lin, L. & Luo, Y., 2022, In: Nature Communications. 13, 14 p., 4049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Leading trait dimensions in flood-tolerant plants

    Pan, Y., Cieraad, E., Armstrong, J., Armstrong, W., Clarkson, B. R., Pedersen, Ole, Visser, E. J. W., Voesenek, L. A. C. J. & van Bodegom, P. M., 2022, In: Annals of Botany. 130, 3, p. 383-392 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Cell fine structure and phylogeny of Parvodinium: towards an ultrastructural characterization of the Peridiniopsidaceae (Dinophyceae)

    Pandeirada, M. S., Craveiro, S. C., Daugbjerg, Niels, Moestrup, Øjvind & Calado, A. J., 2022, In: European Journal of Phycology. 58, 2, 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Ultrastructure and phylogeny of Parvodinium cunningtonii comb. nov. (syn. Peridiniopsis cunningtonii) and description of P. cunningtonii var. inerme var. nov. (Peridiniopsidaceae, Dinophyceae)

    Pandeirada, M. S., Craveiro, S. C., Daugbjerg, Niels, Moestrup, Øjvind & Calado, A. J., 2022, In: European Journal of Protistology. 86, 23 p., 125930.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site

    Parker, M. T., Soanes, B. K., Kusakina, J., Larrieu, A., Knop, K., Joy, N., Breidenbach, F., Sherwood, Anna, Barton, G. J., Fica, S. M., Davies, B. H. & Simpson, G. G., 2022, In: eLife. 11, 34 p., 78808.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Molecular behavior of the domesticated endogenous retroviral protein Arc

    Pedersen, Christian Parsbæk, 2022

    Research output: Book/Report › Ph.D. thesis › Research

  49. Published

    The molecular behaviour of the domesticated endogenous retroviral protein arc

    Pedersen, Christian Parsbæk, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 168 p.

    Research output: Book/Report › Ph.D. thesis › Research

  50. Published

    Upslope release—Downslope receipt? Multi-year plant uptake of permafrost-released nitrogen along an arctic hillslope

    Pedersen, Emily Pickering, Elberling, Bo & Michelsen, Anders, 2022, In: Journal of Ecology. 110, p. 1896–1912 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Why green leaves sometimes turn reddish: An eyewitness report from InterZoo 2022

    Pedersen, Ole, Floytrup, A. H. & Andersen, T., 2022, In: The Aquatic Gardener. 35, 3, p. 10-17

    Research output: Contribution to journal › Journal article › Research

  52. Published

    Genome-wide association study of Klebsiella pneumoniae identifies variations linked to carbapenems resistance

    Pei, N., Sun, W., He, J., Li, Y., Chen, X., Liang, T., Kristiansen, Karsten, Liu, W. & Li, J., 2022, In: Frontiers in Microbiology. 13, 11 p., 997769.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Large-Scale Genomic Epidemiology of Klebsiella pneumoniae Identified Clone Divergence with Hypervirulent Plus Antimicrobial-Resistant Characteristics Causing Within-Ward Strain Transmissions

    Pei, N., Li, Y., Liu, C., Jian, Z., Liang, T., Zhong, Y., Sun, W., He, J., Cheng, X., Li, H., Lei, X., Liu, X., Deng, Z., Liu, Q., Chen, X., Yan, Q., Kristiansen, Karsten, Li, J. & Liu, W., 2022, In: Microbiology Spectrum. 10, 2, 14 p., e02698-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Population genomics and antimicrobial resistance in Klebsiella pneumoniae

    Pei, N., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 157 p.

    Research output: Book/Report › Ph.D. thesis › Research

  55. Published

    Flooding and Soil Properties Control Plant Intra- and Interspecific Interactions in Salt Marshes

    Pellegrini, Elisa, Incerti, G., Pedersen, Ole, Moro, N., Foscari, A., Casolo, V., Contin, M. & Boscutti, F., 2022, In: Plants. 11, 15, 17 p., 1940.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Roots in armour: Protective traits of the barrier to radial oxygen loss

    Peralta Ogorek, Lucas León, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 193 p.

    Research output: Book/Report › Ph.D. thesis › Research

  57. Published

    The barrier to radial oxygen loss prevents H2S intrusion and its toxic effect

    Peralta Ogorek, Lucas León, Takahashi, H., Nakazono, M. & Pedersen, Ole, 2022, p. 15.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  58. Published

    The root barrier to radial oxygen loss: a jack of all trades

    Peralta Ogorek, Lucas León, Tong, Shuai, Kjær, Johan Emil, Song, Zhiwei, Bastegaard, V. K., Zonta, F., Yamauchi, T., de la Cruz Jiménez, J., Takahashi, H., Nakazono, M., Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2022, p. 14.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  59. Published

    Arbuscular mycorrhizal fungal communities of pristine rainforests and adjacent sugarcane fields recruit from different species pools

    Pereira, C. M. R., López-García, Á., Maia, L. C., Frøslev, Tobias Guldberg, Kjøller, Rasmus & Rosendahl, Søren, 2022, In: Soil Biology and Biochemistry. 167, 9 p., 108585.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Direct and indirect effects of warming on moss abundance and associated nitrogen fixation in subarctic ecosystems

    Permin, Aya Tora Foged, Michelsen, Anders & Rousk, Kathrin, 2022, In: Plant and Soil. 471, 1-2, p. 343-358 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    High nitrogen-fixing rates associated with ground-covering mosses in a tropical mountain cloud forest will decrease drastically in a future climate

    Permin, Aya Tora Foged, Horwath, A. B., Metcalfe, D. B., Priemé, Anders & Rousk, Kathrin, 2022, In: Functional Ecology. 36, 7, p. 1772-1781 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Global change effects on moss-associated nitrogen fixation and microbial communities across pristine ecosystems

    Permin, Aya Tora Foged, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 119 p.

    Research output: Book/Report › Ph.D. thesis › Research

  63. Published

    Goat kid recognition of their mothers' calls is not impacted by changes in fundamental frequency or formants

    Perroux, T. A., McElligott, A. G. & Briefer, Elodie, 2022, In: Journal of Zoology. 318, 4, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Mapping global lake dynamics reveals the emerging roles of small lakes

    Pi, X., Luo, Q., Feng, L., Xu, Yang, Tang, Jing, Liang, X., Ma, E., Cheng, R., Fensholt, Rasmus, Brandt, Martin Stefan, Cai, X., Gibson, L., Liu, J., Zheng, C., Li, W. & Bryan, B. A., 2022, In: Nature Communications. 13, 12 p., 5777.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Skeletal muscle adaptations to exercise are not influenced by metformin treatment in humans: secondary analyses of 2 randomised, clinical trials

    Pilmark, N. S., Oberholzer, L., Halling, Jens Frey, Kristensen, Jonas Møller, Bønding, C. P., Elkjær, I., Lyngbæk, M., Elster, G., Siebenmann, C., Holm, N. F., Birk, Jesper Bratz, Larsen, E. L., Meinild-Lundby, A., Wojtaszewski, Jørgen F P, Pilegaard, Henriette, Poulsen, H., Pedersen, Bente Klarlund, Hansen, K. B. & Karstoft, Kristian, 2022, In: Applied Physiology, Nutrition and Metabolism. 47, 3, p. 309-320 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Functional responses of key marine bacteria to environmental change – toward genetic counselling for coastal waters

    Pinhassi, J., Farnelid, H., García, S. M., Teira, E., Galand, P. E., Obernosterer, I., Quince, C., Vila-Costa, M., Gasol, J. M., Lundin, D., Andersson, A. F., Labrenz, M. & Riemann, Lasse, 2022, In: Frontiers in Microbiology. 13, 9 p., 869093.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

    Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    GDF15 is an exercise-induced hepatokine regulated by glucagon and insulin in humans

    Plomgaard, Peter Stendahl, Hansen, J. S., Townsend, L. K., Gudiksen, Anders, Secher, Niels H., Clemmesen, J. O., Støving, R. K., Goetze, Jens P. , Wright, D. C. & Pilegaard, Henriette, 2022, In: Frontiers in Endocrinology. 13, 1037948.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Notes on the flora of Attiki (Sterea Ellas, Greece)

    Polymenakos, K., Tan, K. & Pantavos, V., 2022, In: Nordic Journal of Botany. 2022, 2, 34 p., e03444.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Regulation of the Escherichia coli protein synthesis machinery in response to phosphate starvation

    pfv225, pfv225, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 129 p.

    Research output: Book/Report › Ph.D. thesis › Research

  71. Published

    The novel inflammatory biomarker GlycA and triglyceride-rich lipoproteins are associated with the presence of subclinical myocardial dysfunction in subjects with type 1 diabetes mellitus

    Puig-Jové, C., Julve, J., Castelblanco, E., Julián, M. T., Amigó, N., Andersen, H. U., Ahluwalia, Tarun Veer Singh, Rossing, Peter, Mauricio, D., Jensen, M. T. & Alonso, N., 2022, In: Cardiovascular Diabetology. 21, 257.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Social environment affects sensory gene expression in ant larvae

    Pulliainen, U., Morandin, C., Bos, N., Sundström, L. & Schultner, E., 2022, In: Insect Molecular Biology. 31, 1, p. 1-9 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Pollution status of heavy metals and metalloids in Chinese lakes: Distribution, bioaccumulation and risk assessment

    Qin, Y. & Tao, Y., 2022, In: Ecotoxicology and Environmental Safety. 248, 12 p., 114293.

    Research output: Contribution to journal › Review › Research › peer-review

  74. Published

    Canalized gene expression during development mediates caste differentiation in ants

    Qiu, Bitao, Dai, X., Li, P., Larsen, Rasmus Stenbak, Li, Ruyan, Price, A. L., Ding, G., Texada, Michael James, Zhang, X., Zuo, D., Gao, Q., Jiang, W., Wen, T., Pontieri, L., Guo, C., Rewitz, Kim, Li, Q., Liu, W., Boomsma, Jacobus J. & KU, thw266, 2022, In: Nature Ecology and Evolution. 6, 11, p. 1753-1765

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Somatostatin venom analogs evolved by fish-hunting cone snails: From prey capture behavior to identifying drug leads

    Ramiro, Iris Bea L. , Bjørn-Yoshimoto, Walden, Imperial, J. S., Gajewiak, J., Salcedo, P. F., Watkins, M., Taylor, D., Resager, W., Ueberheide, B., Bräuner, Hans, Whitby, F. G., Hill, C. P., Martin, L. F., Patwardhan, A., Concepcion, G. P., Olivera, B. M. & Safavi-Hemami, H., 2022, In: Science Advances. 8, 12, 16 p., eabk1410.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Herpetofaunal diversity changes with climate: evidence from the Quaternary of McEachern’s Deathtrap Cave, southeastern Australia

    Ramm, T., Thorn, K. M., Hipsley, Christy Anna, Müller, J., Hocknull, S. & Melville, J., 2022, In: Journal of Vertebrate Paleontology. 41, 5, 23 p., e2009844.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Can multi-species biofilms defeat antimicrobial surfaces on medical devices?

    Ramstedt, M. & Burmølle, Mette, 2022, In: Current Opinion in Biomedical Engineering. 22, 8 p., 100370.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    The Native Bees of Lolland (Denmark) Revisited after 100 Years: The Demise of the Specialists

    Rasmussen, C., Kjær Sydenham, M. A., Schmidt, H. T. & Madsen, Henning Bang, 2022, In: Insects. 13, 2, 17 p., 153.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

    Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, Shyam, Gilbert, M Thomas P, Bojesen, Anders Miki, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2022, In: Microbiome. 10, 19 p., 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout (Oncorhynchus mykiss)

    Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Jørgensen, Louise von Gersdorff, Forberg, T., Zuo, S., Kania, Per, Buchmann, Kurt, Kristiansen, Karsten, Bojesen, Anders Miki & Limborg, Morten Tønsberg, 2022, In: Journal of Applied Microbiology. 132, 4, p. 3201-3216 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Normalizing time in terms of space: What drives the fate of spring thaw-released nitrogen in a sloping Arctic landscape?

    Rasmussen, Laura Helene, Mortensen, Louise Hindborg, Ambus, Per Lennart, Michelsen, Anders & Elberling, Bo, 2022, In: Soil Biology and Biochemistry. 175, 8 p., 108840.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage

    Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Ex vivo Release of Calcitonin Gene-Related Peptide from the Trigeminovascular System in Rodents

    Rasmussen, R. H., Jansen-Olesen, I., Kristensen, D. M. & Christensen, S. L., 2022, In: Journal of Visualized Experiments. 183, 19 p., e63723.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Analysis of the fecal and oral microbiota in chronic recurrent multifocal osteomyelitis

    Rausch, P., Hartmann, M., Baines, J. F. & von Bismarck, P., 2022, In: Arthritis Research and Therapy. 24, 16 p., 54.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Pot-pollen supplementation reduces fasting glucose and modulates the gut microbiota in high-fat/high-sucrose fed C57BL/6 mice

    Rebelo, K. S., Nunez, C. E. C., Cazarin, C. B. B., Maróstica Júnior, M. R., Kristiansen, Karsten & Danneskiold-Samsøe, Niels Banhos, 2022, In: Food & Function. 13, 7, p. 3982-3992 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Nutrient-limited subarctic caves harbour more diverse and complex bacterial communities than their surface soil

    Reboleira, Ana Sofia, Bodawatta, Kasun Harshana, Ravn, N. M. R., Lauritzen, S., Skoglund, R. Ø., Poulsen, Michael, Michelsen, Anders & Jønsson, Knud Andreas, 2022, In: Environmental Microbiomes. 17, 17 p., 41.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Could Experimental Inflammation Provide Better Understanding of Migraines?

    Reducha, Philip Victor, Edvinsson, L. & Haanes, Kristian Agmund, 2022, In: Cells. 11, 15, 17 p., 2444.

    Research output: Contribution to journal › Review › Research › peer-review

  88. Published

    Human sperm cells can form paracetamol metabolite AM404 that directly interferes with sperm calcium signalling and function through a CatSper-dependent mechanism

    Rehfeld, Anders Aagaard, Frederiksen, H., Rasmussen, R. H., David, A., Chaker, J., Nielsen, B. S., Nielsen, J. E., Juul, Anders, Skakkebæk, Niels Erik & Kristensen, D. M., 2022, In: Human reproduction (Oxford, England). 37, 5, p. 922-935 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Impact of the COVID-19 Pandemic on Primate Research and Conservation

    Reuter, K. E., Andriantsaralaza, S., Hansen, Malene Friis, Lafleur, M., Jerusalinsky, L., Louis, E. E., Ratzimbazafy, J., Williamson, E. A. & Mittermeier, R. A., 2022, In: Animals. 12, 9, 18 p., 1214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    N2 fixation in the Mediterranean Sea related to the composition of the diazotrophic community and impact of dust under present and future environmental conditions

    Ridame, C., Dinasquet, J., Hallstrøm, S., Bigeard, E., Riemann, Lasse, Van Wambeke, F., Bressac, M., Pulido-Villena, E., Taillandier, V., Gazeau, F., Tover-Sanchez, A., Baudoux, A. & Guieu, C., 2022, In: Biogeosciences. 19, 2, p. 415-435

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Planktonic Aggregates as Hotspots for Heterotrophic Diazotrophy: The Plot Thickens

    Riemann, Lasse, Rahav, E., Passow, U., Grossart, H., de Beer, D., Klawonn, I., Eichner, M., Benavides, M. & Bar-Zeev, E., 2022, In: Frontiers in Microbiology. 13, 9 p., 875050.

    Research output: Contribution to journal › Review › Research › peer-review

  92. Published

    Strategies for Heterologous Expression, Synthesis, and Purification of Animal Venom Toxins

    Rivera-de-Torre, E., Rimbault, C., Jenkins, T. P., Sørensen, C. V., Damsbo, A., Saez, N. J., Duhoo, Y., Hackney, Celeste Menuet, Ellgaard, Lars & Laustsen, A. H., 2022, In: Frontiers in Bioengineering and Biotechnology. 9, 26 p., 811905.

    Research output: Contribution to journal › Review › Research › peer-review

  93. Published

    Winters are changing: snow effects on Arctic and alpine tundra ecosystems

    Rixen, C., Høye, T. T., Macek, P., Aerts, R., Alatalo, J. M., Anderson, J. T., Arnold, P. A., Barrio, I. C., Bjerke, J. W., Björkman, M. P., Blok, D., Blume-Werry, G., Boike, J., Bokhorst, S., Carbognani, M., Christiansen, C. T., Convey, P., Cooper, E. J., Cornelissen, J. H. C., Coulson, S. J. & 48 others, Dorrepaal, E., Elberling, Bo, Elmendorf, S. C., Elphinstone, C., Forte, T. G. W., Frei, E. R., Geange, S. R., Gehrmann, F., Gibson, C., Grogan, P., Halbritter, A. H., Harte, J., Henry, G. H. R., Inouye, D. W., Irwin, R. E., Jespersen, G., Jónsdóttir, I. S., Jung, J. Y., Klinges, D. H., Kudo, G., Lämsä, J., Lee, H., Lembrechts, J. J., Lett, Signe, Lynn, J. S., Mann, H. M. R., Mastepanov, M., Morse, J., Myers-smith, I. H., Olofsson, J., Paavola, R., Petraglia, A., Phoenix, G. K., Semenchuk, P., Siewert, M. B., Slatyer, R., Spasojevic, M. J., Suding, K., Sullivan, P., Thompson, K. L., Väisänen, M., Vandvik, V., Venn, S., Walz, J., Way, R., Welker, J. M., Wipf, S. & Zong, S., 2022, In: Arctic Science. 8, 3, p. 572–608 37 p.

    Research output: Contribution to journal › Review › Research › peer-review

  94. Published

    African climate and geomorphology drive evolution and ghost introgression in sable antelope

    Rocha, J. L., Vaz Pinto, P., Siegismund, Hans Redlef, Meyer, M., Jansen van Vuuren, B., Veríssimo, L., Ferrand, N. & Godinho, R., 2022, In: Molecular Ecology. 31, 10, p. 2968-2984 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Deciphering the Alphabet of Disorder-Glu and Asp Act Differently on Local but Not Global Properties

    Roesgaard, M. A., Lundsgaard, J. E., Newcombe, Estella Anne, Jacobsen, Nina Louise, Pesce, Francesco, Tranchant, E. E., Lindemose, Søren, Prestel, Andreas, Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten & Kragelund, Birthe Brandt, 2022, In: Biomolecules. 12, 10, 19 p., 1426.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Oliepalmer: En stigende trussel mod tropernes biodiversitet og ferskvande?

    Rojas, Oscar, Kepfer Rojas, Sebastian & Jacobsen, Dean, 2022, In: Aktuel Naturvidenskab. 2022, 3, p. 32-36

    Research output: Contribution to journal › Journal article › Communication

  97. Published

    Sex in the wild: repeated observations of planktonic ciliate conjugation from field samples

    Romano, F., Symiakaki, K. & Pitta, P., 2022, In: Journal of Plankton Research. 44, 2, p. 333-336 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Soil volatile organic compound emissions in response to soil warming and nitrogen deposition

    Romero-Olivares, A. L., Davie-Martin, Cleo Lisa, Kramshøj, M., Rinnan, Riikka & Frey, S. D., 2022, In: Elementa. 10, 1, 11 p., 65.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Biotic and abiotic controls of nitrogen fixation in cyanobacteria-moss associations

    Rousk, Kathrin, 2022, In: New Phytologist. 235, 4, p. 1330-1335 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  100. Published

    Prevalence of genetically similar Flavobacterium columnare phages across aquaculture environments reveals a strong potential for pathogen control

    Runtuvuori-Salmela, A., Kunttu, H. M. T., Laanto, E., Almeida, G. M. F., Mäkelä, K., Middelboe, Mathias & Sundberg, L., 2022, In: Environmental Microbiology. 24, 5, p. 2404-2420 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Volatile organic compound emissions from subarctic mosses and lichens

    Ryde, Ingvild, Davie-Martin, Cleo Lisa, Li, Tao, Naursgaard, M. P. & Rinnan, Riikka, 2022, In: Atmospheric Environment. 290, 12 p., 119357.

    Research output: Contribution to journal › Journal article › Research › peer-review

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