Department of Biology

 

 
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  1. 2024
  2. Published

    GLP-1 metabolite GLP-1(9–36) is a systemic inhibitor of mouse and human pancreatic islet glucagon secretion

    Gandasi, N. R., Gao, R., Kothegala, L., Pearce, A., Santos, C., Acreman, S., Basco, D., Benrick, A., Chibalina, M. V., Clark, A., Guida, C., Harris, M., Johnson, P. R. V., Knudsen, J. G., Ma, J., Miranda, C., Shigeto, M., Tarasov, A. I., Yeung, H. Y., Thorens, B. & 5 others, Asterholm, I. W., Zhang, Q., Ramracheya, R., Ladds, G. & Rorsman, P., 2024, In: Diabetologia. 67, p. 528–546 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. E-pub ahead of print

    Eyes, Vision, and Bioluminescence in Deep-Sea Brisingid Sea Stars

    Garm, Anders Lydik, Hamilton, O., Glenner, Henrik, Irwin, Alison Ruth & Mah, C., 2024, (E-pub ahead of print) In: Biological Bulletin.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Imaging of extracellular and intracellular ATP in pancreatic beta cells reveals correlation between glucose metabolism and purinergic signalling

    Ghiasi, S. M., Christensen, Nynne, Pedersen, Per Amstrup, Skovhøj, Emil Zeng & Novak, Ivana, 2024, In: Cellular Signalling. 117, 12 p., 111109.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Cellular and molecular mechanisms of aspartoacylase and its role in Canavan disease

    Grønbæk-Thygesen, Martin & Hartmann-Petersen, Rasmus, 2024, In: Cell and Bioscience. 14, 1, 33 p., 45.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    Analysis of Genomic and Transcriptomic Signatures Associated with Amyotrophic Lateral Sclerosis

    Guan, Liping, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Population size and social structure of lions in a west African protected area

    Gueye, M., Pellaton, R., Van Cauteren, D., Mengual, L., Van Dongen, S., Leirs, H., Bertola, Laura, Faye, P. M., Diop, B., Diop, M. M., Kanté, A. & de Iongh, H., 2024, In: African Journal of Ecology. 62, 1, 11 p., e13226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

    Guo, J., Xue, J., Yin, Y., Pedersen, Ole & Hua, J., 2024, In: Frontiers in Plant Science. 15, 13 p., 1355729.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases

    Guo, Zongxin, Orädd, F., Bågenholm, Viktoria, Grønberg, C., Ma, J. F., Ott, P., Wang, Y., Andersson, M., Pedersen, Per Amstrup, Wang, Kaituo & Gourdon, Pontus Emanuel, 2024, In: Nature Communications. 15, 1, 16 p., 2690.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis

    Gíslason, M. H., Demircan, G. S., Prachar, Marek, Furtwängler, Benjamin, Schwaller, J., Schoof, E., Porse, Bo Torben, Rapin, N. & Bagger, F., 2024, In: Nucleic acids symposium series. 52, D1, p. D1138–D1142 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Mechanisms of Systemic Osmoregulation in Insects

    Halberg, Kenneth Veland & Denholm, B., 2024, In: Annual Review of Entomology. 69, p. 415-438 24 p.

    Research output: Contribution to journal › Review › Research › peer-review

  12. Published

    Plant trait and vegetation data along a 1314 m elevation gradient with fire history in Puna grasslands, Perú

    Halbritter, A. H., Vandvik, V., Cotner, S. H., Farfan-Rios, W., Maitner, B. S., Michaletz, S. T., Oliveras Menor, I., Telford, R. J., Ccahuana, A., Cruz, R., Sallo-Bravo, J., Santos-Andrade, P. E., Vilca-Bustamante, L. L., Castorena, M., Chacón-Labella, J., Christiansen, C. T., Duran, S. M., Egelkraut, D. D., Gya, R., Haugum, S. V. & 42 others, Seltzer, L., Silman, M. R., Strydom, T., Spiegel, M. P., Barros, A., Birkeli, K., Boakye, M., Chiappero, F., Chmurzynski, A., Garen, J. C., Gaudard, J., Gauthier, T. L. J., Geange, S. R., Gonzales, F. N., Henn, J. J., Hošková, K., Isaksen, A., Jessup, L. H., Johnson, W., Kusch, E., Lepley, K., Lift, M., Martyn, T. E., Muñoz Mazon, M., Middleton, S. L., Quinteros Casaverde, N. L., Navarro, J., Zepeda, V., Ocampo-Zuleta, K., Palomino-Cardenas, A. C., Pastor Ploskonka, S., Pierfederici, M. E., Pinelli, V., Rickenback, J., Roos, R. E., Rui, H. S., Sanchez Diaz, E., Sánchez-Tapia, A., Smith, A., Urquiaga-Flores, E., von Oppen, J. & Enquist, B. J., 2024, In: Scientific Data. 11, 1, 18 p., 225.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination

    Hansen, A. L., Theisen, Frederik Friis, Crehuet, R., Marcos, E., Aghajari, N. & Willemoës, Martin, 2024, In: ACS Synthetic Biology. 13, 3, p. 862-875 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Editorial overview: New and revitalized old targets in metabolic disease

    Hansen, Jacob B. & Novak, Ivana, 2024, In: Current Opinion in Pharmacology. 75, 3 p., 102434.

    Research output: Contribution to journal › Editorial › Research › peer-review

  15. E-pub ahead of print

    Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Long-term changes in the daytime growing season carbon dioxide exchange following increased temperature and snow cover in arctic tundra

    Hermesdorf, Lena, Liu, Yijing, Michelsen, Anders, Westergaard-Nielsen, Andreas, Mortensen, Louise Hindborg, Jepsen, M. S., Sigsgaard, Charlotte & Elberling, Bo, 2024, In: Global Change Biology. 30, 1, 15 p., e17087.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The molecular basis for cellular function of intrinsically disordered protein regions

    Holehouse, A. S. & Kragelund, Birthe Brandt, 2024, In: Nature Reviews Molecular Cell Biology. 25, p. 187–211 25 p.

    Research output: Contribution to journal › Review › Research › peer-review

  18. Published

    Positive selection has shaped the evolution of Argentine ant immune genes both in native and introduced supercolonies

    Holmberg, I., Tolonen, L., Paviala, J., Pedersen, Jes Søe, Helanterä, H. & Viljakainen, L., 2024, In: Journal of Evolutionary Biology. 37, 2, p. 131–140 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The extrachromosomal circular DNA atlas of aged and young mouse brains

    Hong, X., Li, J., Han, Peng, Li, S., Yu, J., Zhang, H., Li, J., Dang, Y. & Xiang, X., 2024, In: Scientific Data. 11, 1, 8 p., 318.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly

    Hu, T., Chen, J., Lin, X., He, W., Liang, H., Wang, M., Li, W., Wu, Z., Han, Mo, Jin, X., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: Scientific Reports. 14, 1, 9 p., 1292.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations

    Høie, M. H., Gade, F. S., Johansen, J., Würtzen, C., Winther, Ole, Nielsen, M. & Marcatili, P., 2024, In: Frontiers in Immunology. 15, 12 p., 1322712.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Regional impacts of warming on biodiversity and biomass in high latitude stream ecosystems across the Northern Hemisphere

    Jackson, M. C., Friberg, N., Moliner Cachazo, L., Clark, D. R., Mutinova, P. T., O’Gorman, E. J., Kordas, R. L., Gallo, B., Pichler, D. E., Bespalaya, Y., Aksenova, O. V., Milner, A., Brooks, S. J., Dunn, N., Lee, K. W. K., Ólafsson, J. S., Gíslason, G. M., Millan, L., Bell, T., Dumbrell, A. J. & 1 others, Woodward, G., 2024, In: Communications Biology . 7, 1, 8 p., 316.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch

    Jakobsen, S. T., Jensen, R. A. M., Madsen, M. S., Ravnsborg, T., Vaagenso, C. S., Siersbæk, M. S., Einarsson, H., Andersson, Robin, Jensen, O. N. & Siersbæk, R., 2024, In: Nature Genetics. 56, p. 663–674 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Long-read genome sequencing provides novel insights into the harmful algal bloom species Prymnesium parvum

    Jian, J., Wu, Z., Silva-núñez, A., Li, X., Zheng, X., Luo, B., Liu, Y., Fang, X., Workman, C. T., Larsen, T. O., Hansen, Per Juel & Sonnenschein, E. C., 2024, In: Science of the Total Environment. 908, 168042.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Translational frontiers: insight from lymphatics in skin regeneration

    Jiang, Y. & Perez-Moreno, Mirna, 2024, In: Frontiers in Physiology. 15, 8 p., 1347558.

    Research output: Contribution to journal › Review › Research › peer-review

  26. Published

    Flooding stress and responses to hypoxia in plants

    Jimenez Serna, Juan de la Cruz, Mustroph, A., Pedersen, Ole, Weits, D. A. & Schmidt-schippers, R., 2024, In: Functional Plant Biology. 51, 4, 5 p., FP24061.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. E-pub ahead of print

    Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

    Jimenez Serna, Juan de la Cruz, Armstrong, W., Colmer, T. D. & Pedersen, Ole, 2024, (E-pub ahead of print) In: Plant Physiology. kiae046.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  28. Published

    Chromatin image-driven modelling

    Kadlof, M., Banecki, K., Chilinski, Mateusz & Plewczynski, D., 2024, In: Methods. 226, p. 54-60 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument

    Khani, M., Hansen, Mads Frederik, Rasekh, B., Nosrati, M., Burmølle, Mette, Ghasemipanah, K. & Zamir, S. M., 2024, In: Journal of Industrial and Engineering Chemistry. 132, p. 448-460 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Fertilizer regime and cultivar affect barley growth and rhizobiome composition

    Kindtler, Nikolaj Lunding, Sheikh, Sanea, Richardy, J., Krogh, E., Maccario, Lorrie, Vestergård, M., Rodrigues da Fonseca, Rute Andreia, Ekelund, Flemming & Laursen, Kristian Holst, 2024, In: Applied Soil Ecology. 198, 13 p., 105384.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Microbial community composition unaffected by mycorrhizal plant removal in sub-arctic tundra

    Kirchhoff, L., Gavazov, K., Blume-Werry, G., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering, Peter, M., Pfister, S., Väisänen, M. & Monteux, S., 2024, In: Fungal Ecology. 69, 11 p., 101342.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Dynamics of inflammation-associated plasma proteins following faecal microbiota transplantation in patients with psoriatic arthritis and healthy controls: exploratory findings from the FLORA trial [Inkl. Correction]

    Kragsnaes, M. S., Jensen, J. R. B., Nilsson, A. C., Malik, M. I., Munk, H. L., Pedersen, J. K., Horn, H. C., Kruhøffer, M., Kristiansen, Karsten, Mullish, B. H., Marchesi, J. R., Kjeldsen, J., Röttger, R. & Ellingsen, T., 2024, In: RMD Open. 10, 1, 13 p., e003750.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Næste niveau for dansk life science er verdenstoppen – vi har fagligheden til at være der: Danske forskere, talenter og virksomheder har både bredden og niveauet til at gøre København til det næste Kendall Square. Biologisk Institut står på spring i startklodserne.

    Kroer, Niels, 12 Jan 2024, In: MedWatch.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  34. Published

    Identification of constrained sequence elements across 239 primate genomes

    Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J. & 72 others, Rouselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Karakikes, I., Wang, K. C., Umapathy, G., Roos, C., Boubli, J. P., Siepel, A., Kundaje, A., Paten, B., Lindblad-Toh, K., Rogers, J., Marques Bonet, T. & Farh, K. K. H., 2024, In: Nature. 625, p. 735–742 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Endogenous Tagging of Ciliary Genes in Human RPE1 Cells for Live-Cell Imaging

    Kuhns, S., Juhl, A. D., Anvarian, Zeinab, Wüstner, D., Pedersen, Lotte Bang & Andersen, J. S., 2024, Methods in Molecular Biology. Humana Press, p. 147-166 20 p. (Methods in Molecular Biology, Vol. 2725).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  36. Published

    A druggable conformational switch in the c-MYC transactivation domain

    Lama, D., Vosselman, T., Sahin, Cagla, Liaño-pons, J., Cerrato, C. P., Nilsson, L., Teilum, Kaare, Lane, D. P., Landreh, M. & Arsenian Henriksson, M., 2024, In: Nature Communications. 15, 1, 14 p., 1865.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Organismal and cellular growth control by cholesterol as a nutritronal signal

    Lassen, Mette, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/Report › Ph.D. thesis › Research

  38. E-pub ahead of print

    BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum

    Leader, D. P., Naseem, Muhammad Tayyib & Halberg, Kenneth Veland, 2024, (E-pub ahead of print) In: Journal of Molecular Biology. 168520.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Genomic and functional diversity of cultivated Bifidobacterium from human gut microbiota

    Li, W., Liang, H., He, W., Gao, X., Wu, Z., Hu, T., Lin, X., Wang, M., Zhong, Y., Zhang, H., Ge, L., Jin, X., Xiao, L. & Zou, Y., 2024, In: Heliyon. 10, 5, 14 p., e27270.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Efficient statistical and computational methods for large scale sequencing data

    Li, Zilong, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.

    Research output: Book/Report › Doctoral thesis › Research

  41. Published

    vcfpp: a C11 API for rapid processing of the variant call format

    Li, Z., 2024, In: Bioinformatics. 40, 2, btae049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Flooding-adaptive root and shoot traits in rice

    Lin, C., Zhang, Z., Shen, X., Liu, Dan & Pedersen, Ole, 2024, In: Functional Plant Biology. 51, 1, 13 p., FP23226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Isolation of potentially novel species expands the genomic and functional diversity of Lachnospiraceae

    Lin, X., Hu, T., Wu, Z., Li, L., Wang, Y., Wen, D., Liu, X., Li, W., Liang, H., Jin, X., Xu, X., Wang, J., Yang, H., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: iMeta. 3, 2, 18 p., e174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations

    Liu, X., Lin, L., Sinding, M. H. S., Bertola, L. D., Hanghøj, K., Quinn, L., Garcia-Erill, G., Rasmussen, M. S., Schubert, M., Pečnerová, P., Balboa, R. F., Li, Z., Heaton, M. P., Smith, T. P. L., Pinto, R. R., Wang, X., Kuja, J., Brüniche-Olsen, A., Meisner, J., Santander, C. G. & 8 others, Ogutu, J. O., Masembe, C., Rodrigues da Fonseca, Rute Andreia, Muwanika, V., Siegismund, Hans Redlef, Albrechtsen, Anders, Moltke, Ida & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 16 p., 2921.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Can large language models reason about medical questions?

    Liévin, V., Hother, C. E., Motzfeldt, A. G. & Winther, Ole, 2024, In: Patterns. 5, 3, 12 p., 100943.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Transmembrane transporter proteins: Capturing transport in motion

    Loland, Claus Juul, Wellendorph, Petrine, Pedersen, Stine Helene Falsig & Gether, Ulrik, 2024, In: Basic and Clinical Pharmacology and Toxicology. 134, 2, p. 203-205 3 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  47. Published

    Nitrogen uptake in lentil cultivar mixtures is not predictable from pure stands performance but is correlated with agronomic parameters and experimental conditions

    Lorenzetti, E., Carlesi, S., Michelsen, Anders & Bàrberi, P., 2024, In: Agriculture and Food Security. 13, 1, 13 p., 11.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity

    Lourenço, L., Ellegaard Bager, S., Ng, D. Y. K., Sheikh, Sanea, Kindtler, Nikolaj Lunding, Nielsen, Ida Broman, Frøslev, Tobias Guldberg & Ekelund, Flemming, 2024, In: Protist. 175, 2, 9 p., 126016.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Changes in composition and function of soil microbial communities during secondary succession in oldfields on the Tibetan Plateau

    Ma, Hui, Yan, X., Gao, E., Qiu, Y., Sun, X., Wang, S., Wang, Y., Bruun, Hans Henrik, He, Z., Shi, X. & Zhao, Z., 2024, In: Plant and Soil. 495, p. 429–443 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Genomic Insights into the Taxonomy and Metabolism of the Cyanobacterium Pannus brasiliensis CCIBt3594

    Machado, M. J., Botero, N. B., Andreote, A. P. D., Feitosa, Anderson Miguel Teixeira, Popin, R. V., Sivonen, K. & Fiore, M. F., 5 Feb 2024, In: Taxonomy. 4, 1, p. 184-198 1.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Phytoremediation in the Guadiamar Green Corridor (SW Spain): Trace element uptake by plants and effects on soil fungal diversity

    Madejón, P., Domínguez, M. T., Gil-Martínez, M. & Madejón, E., 2024, In: Advances in Botanical Research. 109, p. 255-294 40 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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