Department of Biology

 

 
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  1. Published

    Hypoxia as a physiological cue and pathological stress for coral larvae

    Alderdice, R., Pernice, M., Cárdenas, A., Hughes, D. J., Harrison, P. L., Boulotte, N., Chartrand, K., Kühl, Michael, Suggett, D. J. & Voolstra, C. R., 2022, In: Molecular Ecology. 31, 2, p. 571-587 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Disparate Inventories of Hypoxia Gene Sets Across Corals Align With Inferred Environmental Resilience

    Alderdice, R., Hume, B. C. C., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Frontiers in Marine Science. 9, 14 p., 834332.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Divergent expression of hypoxia response systems under deoxygenation in reef-forming corals aligns with bleaching susceptibility

    Alderdice, R., Suggett, D. J., Cárdenas, A., Hughes, D. J., Kühl, Michael, Pernice, M. & Voolstra, C. R., 2021, In: Global Change Biology. 27, 2, p. 312-326 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Deoxygenation lowers the thermal threshold of coral bleaching: [Inkl. Correction]

    Alderdice, R., Perna, G., Cárdenas, A., Hume, B. C. C., Wolf, M., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Scientific Reports. 12, 14 p., 18273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Analysis of the behaviours mediating barnacle cyprid reversible adhesion

    Aldred, N., Høeg, Jens Thorvald, Maruzzo, D. & Clare, A. S., 2013, In: P L o S One. 8, 7, 10 p., e68085.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Genome editing in archaeal viruses and endogenous viral protein purification

    Alfastsen, L., Peng, Xu & Bhoobalan, Yuvaraj, 2021, In: STAR Protocols. 2, 4, 27 p., 100791.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Will climate change affect outbreak patterns of planthoppers in Bangladesh?

    Ali, M. P., Huang, D., Nachman, Gøsta Støger, Ahmed, N., Begum, M. A. & Rabbi, M. F., 2014, In: P L o S One. 9, 3, 10 p., e91678.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization

    Ali, Z., Mukwaya, A., Biesemeier, A., Ntzouni, M., Ramsköld, D., Giatrellis, S., Mammadzada, P., Cao, R., Lennikov, A., Marass, M., Gerri, C., Hildesjö, C., Taylor, M., Deng, Q., Peebo, B., del Peso, L., Kvanta, A., Sandberg, R., Schraermeyer, U., Andre, H. & 5 others, Steffensen, John Fleng, Lagali, N., Cao, Y., Kele, J. & Jensen, L. D., 2019, In: Arteriosclerosis, Thrombosis, and Vascular Biology. 39, 7, p. 1402-1418

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Characterizing leader sequences of CRISPR loci

    Alkhnbashi, O., Shah, S. A., Garrett, Roger Antony, Saunders, S. J., Costa, F. & Backofen, R., 2016, In: Bioinformatics. 32, 17, p. i576-i585 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

    Alkhnbashi, O. S., Costa, F., Shah, S. A., Garrett, Roger Antony, Saunders, S. J. & Backofen, R., 2014, In: Bioinformatics. 30, 17, p. i489-i496 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Extinct New Zealand megafauna were not in decline before human colonization

    Allentoft, Morten Erik, Heller, Rasmus, Oskam, C. L., Lorenzen, Eline, Hale, M. L., Gilbert, M Thomas P, Jacomb, C., Holdaway, R. N. & Bunce, M., 2014, In: Proceedings of the National Academy of Sciences USA (PNAS). 111, 13, p. 4922-4927 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Microsatellite analysis of the natterjack toad (Bufo calamita) in Denmark: populations are islands in a fragmented landscape

    Allentoft, Morten Erik, Siegismund, Hans Redlef, Briggs, L. & Andersen, L. W., 2009, In: Conservation Genetics. 10, 1, p. 15-28

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Ancient DNA microsatellite analyses of the extinct New Zealand giant moa (Dinornis robustus) identify relatives within a single fossil site

    Allentoft, Morten Erik, Heller, Rasmus, Holdaway, R. N. & Bunce, M., 2015, In: Heredity. 115, p. 481-487 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Muscular adaptations in swimming scale worms (Polynoidae, Annelida)

    Allentoft-Larsen, M. C., Gonzalez, B. C., Daniels, J., Katija, K., Osborn, K. & Worsaae, Katrine, 2021, In: Royal Society Open Science. 8, 10, 22 p., 210541.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Aberrant intestinal microbiota in individuals with prediabetes

    Allin, K. H., Tremaroli, V., Caesar, R., Jensen, Benjamin Anderschou Holbech, Damgaard, Mads Vargas, Bahl, M. I., Licht, T. R., Hansen, T. H., Nielsen, T., Dantoft, T. M., Linneberg, Allan René, Jørgensen, T., drb459, drb459, Kristiansen, Karsten, Franks, P. W., IMI-DIRECT consortium, I. C., Hansen, Torben, Bäckhed, G. F. & Pedersen, Oluf Borbye, Apr 2018, In: Diabetologia. 61, 4, p. 810-820 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Detecting sequence signals in targeting peptides using deep learning

    Almagro Armenteros, J. J., Salvatore, Marco, Emanuelsson, O., Winther, Ole, von Heijne, G., Elofsson, A. & Nielsen, H., 2019, In: Life Science Alliance. 2, 5, 14 p., 201900429.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    DeepLoc: prediction of protein subcellular localization using deep learning

    Almagro Armenteros, J. J., Sønderby, C. K., Sønderby, S. K., Nielsen, H. & Winther, Ole, 1 Nov 2017, In: Bioinformatics. 33, 21, p. 3387-3395 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds

    Almeida, D., Maldonado, E., Khan, I., Silva, L., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2016, In: Genome Biology and Evolution. 8, 4, p. 1115-1131 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Spontaneous metastasis in congenic mice with transgenic breast cancer is unaffected by plasminogen gene ablation

    Almholt, K., Juncker-Jensen, A., Lærum, O. D., Johnsen, M., Rømer, J. & Lund, L. R., 2013, In: Clinical and Experimental Metastasis. 30, 3, p. 277-288 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Metastasis is strongly reduced by the matrix metalloproteinase inhibitor Galardin in the MMTV-PymT transgenic breast cancer model

    Almholt, K., Juncker-Jensen, A., Lærum, O. D., Danø, K. B., Johnsen, M., Lund, L. R. & Rømer, J., 2008, In: Molecular Cancer Therapeutics. 7, 9, p. 2758-2767 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    From embryonic stem cells to testicular germ cell cancer-- should we be concerned?

    Almstrup, Kristian, Sonne, Si Brask, Hoei-Hansen, C. E., Ottesen, A. M., Nielsen, J. E., Skakkebæk, Niels Erik, Leffers, H. & Rajpert-De Meyts, E., 2006, In: International Journal of Andrology. 29, 1, p. 211-8 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Analysis of cell-type-specific gene expression during mouse spermatogenesis

    Almstrup, Kristian, Nielsen, J. E., Hansen, M. A., Tanaka, M., Skakkebæk, Niels Erik & Leffers, H., Jun 2004, In: Biology of Reproduction. 70, 6, p. 1751-1761 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Improved gene expression signature of testicular carcinoma in situ

    Almstrup, Kristian, Leffers, H., Lothe, R. A., Skakkebæk, Niels Erik, Sonne, Si Brask, Nielsen, J. E., Rajpert-De Meyts, E. & Skotheim, R. I., 2007, In: International Journal of Andrology. 30, 4, p. 292-303

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Genomic and gene expression signature of the pre-invasive testicular carcinoma in situ

    Almstrup, Kristian, Ottesen, A. M., Sonne, Si Brask, Hoei-Hansen, C. E., Leffers, H., Rajpert-De Meyts, E. & Skakkebæk, Niels Erik, 2005, In: Cell and Tissue Research. 322, 1, p. 159-65 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes

    Alneberg, J., Bennke, C., Beier, S., Bunse, C., Quince, C., Ininbergs, K., Riemann, Lasse, Ekman, M., Jürgens, K., Labrenz, M., Pinhassi, J. & Andersson, A. F., 2020, In: Communications Biology. 3, 10 p., 119.

    Research output: Contribution to journal › Journal article › Research › peer-review

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