Department of Biology

 

 
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  1. Published

    Spatial genetic patterns in African wild dogs reveal signs of effective dispersal across southern Africa

    Tensen, L., Jansen van Vuuren, B., Groom, R., Bertola, Laura, de Iongh, H., Rasmussen, G., Du Plessis, C., Davies-Mostert, H., van der Merwe, D., Fabiano, E., Lages, F., Rocha, F., Monterroso, P. & Godinho, R., 2022, In: Frontiers in Ecology and Evolution. 10, 12 p., 992389.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implicatons for experimantal design

    Terenius, O., Papanicolaou, A., Garbutt, J. S., Albrechtsen, M. T., Grimmelikhuijzen, Cornelis (Cok), Hauser, Frank & Lundmark, K. O. M., 2011, In: Journal of Insect Physiology. 57, 2, p. 231-245 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A hidden Markov model approach for determining expression from genomic tiling micro arrays

    Terkelsen, K. M., Gardner, P. P., Arctander, P. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 239

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Fast phylogenetic DNA barcoding

    Terkelsen, K. M., Boomsma, Wouter, Willerslev, Eske & Nielsen, Rasmus, 2008, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 363, 1512, p. 3997-4002 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Automatic generation of gene finders for eukaryotic species

    Terkelsen, K. M. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 263

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Statistical assignment of DNA sequences using Bayesian phylogenetics

    Terkelsen, K. M., Boomsma, Wouter, Huelsenbeck, J. P., Willerslev, Eske & Nielsen, Rasmus, 2008, In: Systematic Biology. 57, 5, p. 750-757 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration

    Terkelsen, T., Russo, F., Gromov, P., Haakensen, V. D., Brunak, Søren, Gromova, I., Krogh, Anders & Papaleo, E., 2020, In: Breast Cancer Research. 22, 1, 36 p., 73.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data

    Terkelsen, T., Krogh, Anders & Papaleo, E., 2020, In: PLOS Computational Biology. 16, 3, 20 p., e1007665.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    High-throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype-specific serologically relevant biomarkers

    Terkelsen, T., Pernemalm, M., Gromov, P., Borresen-Dale, A., Krogh, Anders, Haakensen, V. D., Lethio, J., Papaleo, E. & Gromova, I., 2021, In: Molecular Oncology. 15, 2, p. 429-461 33 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Bioinformatic Analysis of Breast Tumor Interstitial Fluids: Insights into a Pan-molecular Secretome

    Terkelsen, Thilde Bagger, 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  11. Published

    Changes in community structure and biomass of seagrass communities along gradients of siltation in SE Asia

    Terrados, J., Duarte, C. M., Borum, Jens, Agawin, N. S. R., Bach, S. S., Thampanya, U., Nielsen, Lars Kamp, Kenworthy, W. J., Geertz-Hansen, O. & Vermaat, J., 1998, In: Estuarine, Coastal and Shelf Science. 46, p. 757-768

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Are seagrass growth and survival constrained by the reducing conditions of the sediment?

    Terrados, J., Duarte, C. M., Nielsen, Lars Kamp, Agawin, N. S. R., Cacia, E., Lacap, D., Fortes, M. D., Borum, Jens, Lubanski, M. & Greve, T. M., 1999, In: Aquatic Botany. 65, p. 175-197

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Nutrient limitation of the tropical seagrass Enhalus acoroides (L.) Royle in Cape Boliano, NW Philippines

    Terrados, J., Agawin, N. S. R., Duarte, C. M., Fortes, M. D., Nielsen, Lars Kamp & Borum, Jens, 1999, In: Aquatic Botany. 65, p. 123-139

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Nutrient and mass allocation of South-east Asian seagrasses

    Terrados, J., Borum, Jens, Duarte, C. M., Fortes, M. D., Nielsen, Lars Kamp, Agawin, N. S. R. & Kenworthy, W. J., 1999, In: Aquatic Botany. 63, p. 203-217

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Molecular traces of alternative social organization in a termite genome

    Terrapon, N., Li, C., Robertson, H. M., Ji, L., Meng, X., Booth, W., Chen, Z., Childers, C. P., Glastad, K. M., Gokhale, K., Gowin, J., Gronenberg, W., Hermansen, R. A., Hu, H., Hunt, B. G., Huylmans, A. K., Khalil, S. M. S., Mitchell, R. D., Munoz-Torres, M. C., Mustard, J. A. & 23 others, Pan, H., Reese, J. T., Scharf, M. E., Sun, F., Vogel, H., Xiao, J., Yang, W., Yang, Z., Yang, Z., Zhou, J., Zhu, J., Brent, C. S., Elsik, C. G., Goodisman, M. A. D., Liberles, D. A., Roe, R. M., Vargo, E. L., Vilcinskas, A., Wang, J., Bornberg-Bauer, E., Korb, J., KU, thw266 & Liebig, J., 2014, In: Nature Communications. 5, 12 p., 3636.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Areas of climate stability of species ranges in the Brazilian Cerrado: disentangling uncertainties through time

    Terribile, L. C., Lima-Ribeiro, M. S., Bastos Araujo, M., Bizao, N., Collevatti, R. G., Dobrovolski, R., Franco, A. A., Guilhaumon, F., Lima, J. D. S., Murakami, D. M., Nabout, J. C., de Oliveira, G., de Oliveira, L. K., Rabelo, S. G., Rangel, T. F., Simon, L. M., Soares, T. N., de Campos Telles, M. P. & Felizola Diniz-Filho, J. A., 2012, In: Natureza & Conservacao. 10, 2, p. 152-159 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A comparison of some techniques used in individuality studies for their use as conservation tools

    Terry, A. M. R., McGregor, P. K. & Peake, T. M., 2001, In: Bioacoustics - the International Journal of Animal Sound and its Recording. 11, p. 169-188

    Research output: Contribution to journal › Journal article › Research

  18. Published

    Finding faces in the crowd: neural networks used to count and monitor populations of calling birds

    Terry, A. M. R. & McGregor, P. K., 2001, In: Adv. In Ethol.. 36, p. 274

    Research output: Contribution to journal › Journal article › Research

  19. Published

    The role of vocal individuality in conservation

    Terry, A. M. R., Peake, T. M. & McGregor, P. K., 2005, In: Frontiers in Zoology. 2, 10, p. 16

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Communication networks in a virtual world

    Terry, A. M. R. & Lachlan, R., 2005, Animal Communication Networks. McGregor, P. K. (ed.). Cornwall College, Newquay: Cambridge University Press, p. 604-627

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  21. Published

    Possible signs of recovery of the nearly extirpated Spitsbergen bowhead whales: calves observed in east Greenland

    Tervo, O. M., Louis, Marie Georgette Yolande J, Sinding, Mikkel Holger Strander, Heide-Jørgensen, M. P. & Hansen, R. G., 2023, In: Polar Research. 42, 4 p., 8809.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Effect of insulin on natriuretic peptide gene expression in porcine heart

    Terzic, D., Zois, N. E., Hunter, I., Christoffersen, Christina, Plomgaard, Peter Stendahl, Olsen, Lisbeth Høier, Jørgensen, Stine Ringholm, Pilegaard, Henriette & Goetze, Jens P. , 2020, In: Peptides. 131, 10 p., 170370.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles

    Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Wang, Yong, Crehuet, R. & Lindorff-Larsen, Kresten, 2021, In: PLOS Computational Biology. 17, 1, 18 p., e1008551.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Lipid shape and packing are key for optimal design of pH-sensitive mRNA lipid nanoparticles

    Tesei, Giulio, Hsiao, Y. W., Dabkowska, A., Grönberg, G., Yanez Arteta, M., Ulkoski, D., Bray, D. J., Trulsson, M., Ulander, J., Lund, M. & Lindfors, L., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 2, 11 p., e2311700120.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Improved predictions of phase behaviour of intrinsically disordered proteins by tuning the interaction range

    Tesei, Giulio & Lindorff-Larsen, Kresten, 2023, In: Open Research Europe. 2, 94, 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Conformational ensembles of the human intrinsically disordered proteome

    Tesei, Giulio, Trolle, A. I., Jonsson, Nicolas, Betz, J., Knudsen, F. E., Pesce, Francesco, Johansson, Kristoffer Enøe & Lindorff-Larsen, Kresten, 2024, In: Nature. 626, p. 897-904 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Accurate model of liquid-liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties

    Tesei, Giulio, Schulze, T. K., Crehuet, R. & Lindorff-Larsen, Kresten, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 44, 10 p., e2111696118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants

    Teseo, S., van Zweden, J. S., Pontieri, L., Kooij, P. W., Sørensen, Søren Johannes, Wenseleers, T., Poulsen, Michael, Boomsma, Jacobus J. & Sapountzis, P., 2019, In: Animal Behaviour. 150, p. 239-254

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Plastic leachates impair growth and oxygen production in Prochlorococcus, the ocean's most abundant photosynthetic bacteria

    Tetu, S. G., Sarker, I., Schrameyer, V., Pickford, R., Elbourne, L. D. H., Moore, L. R. & Paulsen, I. T., 2019, In: Communications Biology. 2, 9 p., 184.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    SignalP 6.0 predicts all five types of signal peptides using protein language models

    Teufel, Felix Georg, Almagro Armenteros, J. J., Johansen, A. R., Gíslason, M. H., Pihl, S. I., Tsirigos, Konstantinos, Winther, Ole, Brunak, Søren, von Heijne, G. & Nielsen, H., 2022, In: Nature Biotechnology. 40, p. 1023-1025

    Research output: Contribution to journal › Comment/debate › Research

  31. Published

    DeepPeptide predicts cleaved peptides in proteins using conditional random fields

    Teufel, Felix Georg, Refsgaard, J. C., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Bioinformatics (Oxford, England). 39, 10, 6 p., btad616.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Deorphanizing Peptides Using Structure Prediction

    Teufel, Felix Georg, Refsgaard, J. C., Kasimova, M. A., Deibler, K., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Journal of Chemical Information and Modeling. 63, 9, 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    GraphPart: homology partitioning for biological sequence analysis

    Teufel, Felix Georg, Gíslason, M. H., Almagro Armenteros, J. J., Johansen, A. R., Winther, Ole & Nielsen, H., 2023, In: NAR Genomics and Bioinformatics. 5, 4, 9 p., lqad088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A fat-tissue sensor couples growth to oxygen availability by remotely controlling insulin secretion

    Texada, Michael James, Jørgensen, A. F., Christensen, Christian Fokdal, Koyama, Takashi, Malita, Alina, Smith, D. K., Marple, D. F. M., Danielsen, E. T., Petersen, S. K., Hansen, J. L., Halberg, Kenneth Veland & Rewitz, Kim, 2019, In: Nature Communications. 10, p. 1-16 1955.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Autophagy-Mediated Cholesterol Trafficking Controls Steroid Production

    Texada, Michael James, Malita, Alina, Christensen, C. F., Dall, K. B., Faergeman, N. J., Nagy, S., Halberg, Kenneth Veland & Rewitz, Kim, 2019, In: Developmental Cell. 48, 5, p. 659-671, e1-e4

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Autophagy regulates steroid production by mediating cholesterol trafficking in endocrine cells

    Texada, Michael James, Malita, Alina & Rewitz, Kim, 2019, In: Autophagy. 15, 8, p. 1478-1480

    Research output: Contribution to journal › Editorial › Research › peer-review

  37. Published

    Insulin signaling couples growth and early maturation to cholesterol intake in Drosophila

    Texada, Michael James, Lassen, Mette, Pedersen, L. H., Koyama, Takashi, Malita, Alina & Rewitz, Kim, 2022, In: Current Biology. 32, 7, p. 1548-1562.e6

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Regulation of Body Size and Growth Control

    Texada, Michael James, Koyama, Takashi & Rewitz, Kim, 2020, In: Genetics. 216, 2, p. 269-313 45 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Benthic carbon cycling in Young Sound, Northeast Greenland

    Thamdrup, B., Glud, R. N. & Hansen, J. W., 2007, Carbon cycling in Arctic marine ecosystems: Case study Young Sound.: Meddr. Grønland, Bioscience. Rysgaard, S. & Glud, R. N. (eds.). Meddelelser om Grønland, Bioscience, Vol. 58. p. 138-157

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  40. Published

    Attenuated purinergic receptor function in patients with type 2 diabetes

    Thaning, P., Bune, L. T., Hellsten, Ylva, Pilegaard, Henriette, Saltin, B. & Rosenmeier, J. B., 2010, In: Diabetes. 59, 1, p. 182-189 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Drying of Springs in the Himalayan Region of Nepal: Perspectives of Local Government Leaders on Causes, Consequences, and Conservation Efforts

    Thapa, B., Bhattarai, C., Dahal, N., Tiwari, S. & Jacobsen, Dean, 2023, In: Mountain Research and Development. 43, 4, p. R9-R15 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Complex pattern formation of marine gradient bacteria explained by a simple computer model

    Thar, R. & Fenchel, Tom, 2005, In: FEMS Microbiology Letters. 246, p. 75-59

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Survey of Motile Microaerophilic Bacterial Morphotypes in the Oxygen Gradient above a Marine Sulfidic Sediment

    Thar, R. & Fenchel, Tom, 2005, In: Applied and Environmental Microbiology. 71(7), p. 3682-3691

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Bacteria are not too small for spatial sensing of chemical gradients: An experimental evidence

    Thar, R. & Kühl, Michael, 2003, In: Proceedings of the National Academy of Science of the United States of America. 100, 10, p. 5748-5753

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Propagation of electromagnetic radiation in mitochondria?

    Thar, R. & Kühl, Michael, 2004, In: Journal of Theoretical Biology. 230, p. 261-270

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Fiber-optic fluorometer for microscale mapping of photosynthetic pigments in microbial communities

    Thar, R. M., Kühl, Michael & Holst, G., 2001, In: Applied and Environmental Microbiology. 67, 6, p. 2823-2828

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    True Chemotaxis in Oxygen Gradients of the Sulfur-Oxidizing Bacterium Thiovulum majus

    Thar, R. M. & Fenchel, Tom, 2001, In: Applied and Environmental Microbiology. 67(7), p. 3299-3303

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Conspicuous veils formed by vibrioid bacteria on sulfidic marine sediment

    Thar, R. M. & Kühl, Michael, 2002, In: Applied and Environmental Microbiology. 68, 12, p. 6310-6320

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A new system for three-dimensional tracking of motile microorganisms

    Thar, R. M., Blackburn, N. & Kühl, Michael, 2000, In: Applied and Environmental Microbiology. 66, p. 2238-2242

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Motility of Marichromatium gracile in Response to Light, Oxygen, and Sulfide

    Thar, R. M. & Kühl, Michael, 2001, In: Applied and Environmental Microbiology. 67, 12, p. 5410-5419

    Research output: Contribution to journal › Journal article › Research › peer-review

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