Department of Biology

 

 
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  1. Published

    Variation in fungal enzyme spectra may affect mutualistic division of labour between ants and fungus gardens

    de Fine Licht, Henrik Hjarvard & Boomsma, Jacobus J., 2011. 1 p.

    Research output: Contribution to conference › Poster › Research

  2. Published

    Substrate use and enzyme activity in fungus-growing ants

    de Fine Licht, Henrik Hjarvard, 2009, Biologisk Institut: Museum Tusculanum. 172 p.

    Research output: Book/Report › Ph.D. thesis › Research

  3. Published

    Conflict and cooperation between fungi and termites in Macrotermes natalensis

    de Fine Licht, Henrik Hjarvard, Boomsma, Jacobus J. & Aanen, D. K., 2006. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  4. Published

    Presumptive horizontal symbiont transmission in the fungus-growing termite Macrotermes natalensis

    de Fine Licht, Henrik Hjarvard, Boomsma, Jacobus J. & Aanen, D. K., 2006, In: Molecular Ecology. 15, 11, p. 3131-3138

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Reversal of resistance by GF120918 in cell lines expressing the ABC half-transporter, MXR

    de Bruin, M., Miyake, K., Litman, Thomas, Robey, R. & Bates, S. E., 15 Nov 1999, In: Cancer Letters. 146, 2, p. 117-26 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    A microsensor study of light enhanced Ca2+ uptake and photosynthesis in the reef-building hermatypic coral Favia sp.

    de Beer, D., Kühl, Michael, Stambler, N. & Vaki, L., 2000, In: Marine Ecology Progress Series. 194, p. 75-85 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Interfacial processes and activities in biofilms and microbial mats.

    de Beer, D. & Kühl, Michael, 2001, The Benthic Boundary Layer: Transport Processes and Biogeochemistry. Boudreau, B. P. & Jørgensen, B. B. (eds.). Oxford: Oxford University Press, p. 374-394

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  8. Published

    Glucagon-like peptide-1, but not glucose-dependent insulinotropic peptide, inhibits glucagon secretion via somatostatin (receptor subtype 2) in the perfused rat pancreas

    de, H. J., Rasmussen, C., Coy, D. H. & Holst, Jens Juul, 2008, In: Diabetologia. 51, 12, p. 2263-2270 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Computational Studies of Drug Resistance: Investigating Binding Affinities and Structural Ensembles of Proteins

    da Silva Martins, J. M., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  10. Published

    pCramoll and rCramoll as new preventive agents against the oxidative dysfunction induced by hydrogen peroxide

    da Silva, L. C. N., Pereira Alves, N. M., Accioly Brelaz de Castro, M. C., Maciel Higino, T. M., Albuquerque da Cunha, C. R., Alves Pereira, V. R., Nogueira da Paz, N. V., Breitenbach Barroso Coelho, L. C., dos Santos Correia, M. T. & Bressan Queiroz de Figueiredo, R. C., 2015, In: Oxidative Medicine and Cellular Longevity. 2015, 9 p., 520872.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices

    da Piedade, I., Tang, M. E. & Elemento, O., 2009, In: BMC Bioinformatics. 10, 388, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Computational approches to discover and characterize core elements and trascription factr binding sites in eukaryotes

    da Piedade, I., 2009, Museum Tusculanum. 130 p.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

    Rodrigues da Fonseca, Rute Andreia, Urena, I., Afonso, S., Pires, A. E., Jørsboe, E., Chikhi, L. & Ginja, C., 2019, In: BMC Genomics. 20, p. 1-13 334.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia

    Rodrigues da Fonseca, Rute Andreia, Campos, P. F., Rey de la Iglesia, Alba, Barroso, G. V., Bergeron, Lucie Adrienne, Nande, M., Tuya, F., Abidli, S., Pérez, M., Riveiro, I., Carrera, P., Jurado-Ruzafa, A., Santamaría, M. T. G., Faria, R., Machado, A. M., Fonseca, M. M., Froufe, E. & Castro, L. F. C., 2024, In: Genes. 15, 2, 15 p., 170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Symbiotic Plant Biomass Decomposition in Fungus-Growing Termites

    da Costa, R. R., Hu, H., Li, H. & Poulsen, Michael, 2019, In: Insects. 10, 4, 15 p., 87.

    Research output: Contribution to journal › Review › Research › peer-review

  17. Published

    Can interaction specificity in the fungus-farming termite symbiosis be explained by nutritional requirements of the fungal crop?

    da Costa, R. R., Vreeburg, S. M. E., Shik, Jonathan Z., Aanen, D. K. & Poulsen, Michael, 2019, In: Fungal Ecology. 38, p. 54-61

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A dual-reporter system for investigating and optimizing protein translation and folding in E. coli

    Zutz, A., Hamborg, L., Pedersen, L. E., Kassem, M. M., Papaleo, E., Koza, A., Herrgård, M. J., Ingemann Jensen, S., Teilum, Kaare, Lindorff-Larsen, Kresten & Nielsen, A. T., 2021, In: Nature Communications. 12, 15 p., 6093.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers

    Zupancic, J., Raghupathi, P. K., Houf, K., Burmølle, Mette, Sørensen, Søren Johannes & Gunde-Cimerman, N., 2018, In: Frontiers in Microbiology. 9, 13 p., 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes

    Zuo, Zhangli Thomsen, Roux, M. E., Sæmundsson, H. P., Müller, M., Bosch, S. M. & Petersen, Morten, 2021, In: FEBS Letters. 595, 2, p. 253-263 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. E-pub ahead of print

    PAT mRNA decapping factors are required for proper development in Arabidopsis

    Zuo, Zhangli Thomsen, Roux, M. E., Dagdas, Y. F., Rodriguez, Eleazar & Petersen, M., 2024, (E-pub ahead of print) In: FEBS Letters.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    mRNA Decapping Factors LSM1 and PAT Paralogs Are Involved in Turnip Mosaic Virus Viral Infection

    Zuo, Zhangli Thomsen, Roux, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Molecular plant-microbe interactions : MPMI. 35, 2, p. 125-130 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Functional study of PAT mRNA decapping factors in Arabidopsis

    Zuo, Zhangli Thomsen, 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development

    Zuo, Zhangli Thomsen, Roux, M. E., Chevalier, J. R., Dagdas, Y. F., Yamashino, T., Højgaard, S. D., Knight, E., Østergaard, L., Rodriguez, Eleazar & Petersen, Morten, 2023, In: Life Science Alliance. 6, 9, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Characteristics of Growth and Development of Different Jerusalem Artichoke Cultivars

    Zubr, J. & Pedersen, H. S., 1993, In: Studies in Plant Science. 3, p. 9

    Research output: Contribution to journal › Journal article › Research

  26. Published

    Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov

    Zou, Y., Xue, W., Lin, X., Lv, M., Luo, G., Dai, Y., Sun, H., Liu, S., Sun, C., Hu, T. & Xiao, L., 2021, In: Systematic and Applied Microbiology. 44, 3, 8 p., 126201.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

    Zou, Y., Xue, W., Luo, G., Deng, Z., Qin, P., Guo, R., Sun, H., Xia, Y., Liang, S., Dai, Y., Wan, D., Jiang, R., Su, L., Feng, Q., Jie, Z., Guo, T., Xia, Z., Liu, C., Yu, J., Lin, Y. & 11 others, Tang, S., Huo, G., Xu, X., Hou, Y., Liu, X., Wang, J., Yang, H., Kristiansen, Karsten, Li, J., Jia, H. & Xiao, L., 2019, In: Nature Biotechnology. 37, 2, p. 179-185

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Taxonomic Description and Genome Sequence of Christensenella intestinihominis sp. nov., a Novel Cholesterol-Lowering Bacterium Isolated From Human Gut

    Zou, Y., Xue, W., Lin, X., Hu, T., Liu, S., Sun, C., Luo, G., Lv, M., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Frontiers in Microbiology. 12, 13 p., 632361.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Characterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces

    Zou, Y., Lin, X., Xue, W., Tuo, L., Chen, M., Chen, X., Sun, C., Li, F., Liu, S., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Scientific Reports. 11, 13 p., 11340.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Free Energy Profile and Kinetics of Coupled Folding and Binding of the Intrinsically Disordered Protein p53 with MDM2

    Zou, R., Zhou, Y., Wang, Yong, Kuang, G., Ågren, H., Wu, J. & Tu, Y., 2020, In: Journal of Chemical Information and Modeling. 60, 3, p. 1551-1558 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Fecal microbiota transplantation results in bacterial strain displacement in patients with inflammatory bowel diseases

    Zou, M., Jie, Z., Cui, B., Wang, H., Feng, Q., Zou, Y., Zhang, X., Yang, H., Wang, J., Zhang, F. & Jia, H., 2020, In: FEBS Open Bio. 10, 1, p. 41-55

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Effect of caloric restriction on BMI, gut microbiota, and blood amino acid levels in non-obese adults

    Zou, H., Wang, D., Ren, H., Cai, K., Chen, P., Fang, Chao, Shi, Z., Zhang, P., Wang, J., Yang, H. & Zhong, H., 2020, In: Nutrients. 12, 3, 15 p., 631.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Microbial processes and organic priority substances in marine coastal sediments (Adriatic Sea, Italy)

    Zoppini, A., Ademollo, N., Amalfitano, S., Dellisanti, Walter, Lungarini, S., Miserocchi, S., Patrolecco, L. & Langone, L., 2015, EGU General Assembly Conference Abstracts. p. 10443 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  34. Published

    Linking the microbial community processes to the contamination by priority organic substances: in situ observations on coastal sediments of the Adriatic Sea (Italy)

    Zoppini, A., Ademollo, N., Amalfitano, S., Dellisanti, Walter, Lungarini, S., Miserocchi, S., Patrolecco, L. & Langone, L., 2015, Proceedings PERSEUS Scientific Conference “Integrated Marine Research in the Mediterranean and the Black Sea”. Brussels. p. 7-9 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  35. Published

    New floristic records in the Balkans 22: reports 160-168

    Zografidis, A., Tan, K. & Vold, G., 2013, In: Phytologia Balcanica. 19, 2, p. 298-303 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Circulating leptin and thyroid dysfunction.

    Zimmermann-Belsing, T., Brabant, G., Holst, Jens Juul & Feldt-Rasmussen, Ulla, 2003, In: European Journal of Endocrinology. 149, 4, p. 257-71 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Leapfrogging into new territory: how Mascarene ridged frogs diversified across Africa and Madagascar to maintain their ecological niche

    Zimkus, B. M., Lawson, L. P., Barej, M. F., Barratt, C. D., Channing, A., Dash, K. M., Dehling, J. M., Du Preez, L., Gehring, P., Greenbaum, E., Gvoždík, V., Harvey, J., Kielgast, J., Kusamba, C., Nagy, Z. T., Pabijan, M., Penner, J., Rödel, M., Vences, M. & Lötters, S., Jan 2017, In: Molecular Phylogenetics and Evolution. 106, p. 254-269 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Clematis austroanatolica (Ranunculaceae), an unusual new species from southern Anatolia, Turkey

    Zielinski, J. & Tan, K., 2011, In: Phytotaxa. 24, p. 28-32 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Dichondra Repens (Convolvulaceae), a new alien species in the flora of Turkey

    Zielinski, J. & Tan, K., 2000, In: The Karaca Arboretum Magazine. 5, p. 119-124

    Research output: Contribution to journal › Journal article › Research

  40. Published

    Notes on the taxonomy of Genista januensis and G. lydia (Fabaceae)

    Zielinski, J., Tan, K. & Tomaszewski, D., 2004, In: Annales Botanici Fennici. 41(6), p. 453-457

    Research output: Contribution to journal › Journal article › Research

  41. Published

    Taxonomic status of the roses (Rosa) described by S.G. Dimitrov from Bulgaria

    Zielinski, J., Petrova, A. & Tan, K., 2004, In: Annales Botanici Fennici. 41, 6, p. 449-451

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Hyperspectral Luminescence Imaging in Combination with Signal Deconvolution Enables Reliable Multi-Indicator-Based Chemical Sensing

    Zieger, S. E., Moßhammer, Maria, Kühl, Michael & Koren, K., 2021, In: ACS Sensors. 6, 1, p. 183-191

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    MicroRNAs and potential target interactions in psoriasis

    Zibert, J. R., Løvendorf, M. B., Litman, Thomas, Olsen, Jørgen, Kaczkowski, B. & Skov, Lone, 2010, In: Journal of Dermatological Science. 58, 3, p. 177-185 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Caloplaca tornoënsis and Caloplaca spitsbergensis (lichenes). The two lichen species from the Taimyr Peninsula new to Russia

    Zhurbenko, M. P. & Søchting, Ulrik, 1993, In: Botanisk Journal. 78 (2), p. 118-120

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Diversity and transmission of gut bacteria in Atta and Acromyrmex leaf-cutting ants during development

    Zhukova, M., Sapountzis, P., Schiøtt, M. & Boomsma, Jacobus J., 10 Oct 2017, In: Frontiers in Microbiology. 8, 14 p., 1942.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Phylogenomic analysis and metabolic role reconstruction of mutualistic Rhizobiales hindgut symbionts of Acromyrmex leaf-cutting ants

    Zhukova, M., Sapountzis, P., Schiott, M. & Boomsma, Jacobus J., 2022, In: FEMS Microbiology Ecology. 98, 9, 13 p., fiac084.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Unparalleled details of soft tissues in a Cretaceous ant

    Zhuang, Y., Xu, W., KU, thw266, Mai, H., Li, X., He, H., Ran, H. & Liu, Y., 2022, In: BMC Ecology and Evolution. 22, 1, 10 p., 146.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Case report of a Li-Fraumeni syndrome-like phenotype with a de novo mutation in CHEK2

    Zhuang, X., Li, Y., Cao, H., Wang, T., Chen, J., Liu, J., Lin, L., Ye, R., Li, X., Liu, S., Li, W., Lv, Y., Zhang, J., He, C., Xu, X., Wang, Z., Huang, C., Liu, X. & Wang, L., 2016, In: Medicine (Baltimore). 95, 29, 6 p., 29.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Comparative Proteomics and Secretomics Revealed Virulence and Antibiotic Resistance-Associated Factors in Vibrio parahaemolyticus Recovered From Commonly Consumed Aquatic Products

    Zhu, Z., Yang, L., Yu, P., Wang, Y., Peng, Xu & Chen, L., 2020, In: Frontiers in Microbiology. 11, 31 p., 1453.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period

    Zhu, Z., Noel, S. J., Difford, G. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 8 Nov 2017, In: PLoS ONE. 12, 11, 24 p., e0187858.

    Research output: Contribution to journal › Journal article › Research › peer-review

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