Department of Biology

 

 
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  1. Published

    Using niche-based modelling to assess the impact of climate change on tree functional diversity in Europe

    Thuiller, W., Lavorel, S., Sykes, M. T. & Bastos Araujo, M., 2006, In: Diversity and Distributions-a Journal of Biological Invasions and Biodiversity. 12, 1, p. 49-60

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    The truncated metabolite GLP-2 (3-33) interacts with the GLP-2 receptor as a partial agonist.

    Thulesen, J., Knudsen, L. B., Hartmann, B., Hastrup, S., Kissow, Hannelouise, Jeppesen, P. B., Ørskov, Cathrine, Holst, Jens Juul & Poulsen, Steen Seier, 2002, In: Regulatory Peptides. 103, 1, p. 9-15 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Induction of cytotoxic CD8+CD56+ T cells from human thymocytes by interleukin-15.

    Thulesen, S., Nissen, Mogens Holst, Ødum, Niels & Röpke, C., 2001, In: Journal of Interferon & Cytokine Research. 21, 11, p. 905-11 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    DeepLoc 2.0: multi-label subcellular localization prediction using protein language models

    Thumuluri, V., Almagro Armenteros, J. J., Johansen, A. R., Nielsen, H. & Winther, Ole, 2022, In: Nucleic Acids Research. 50, W1, p. W228-W234

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model

    Thygesen, Christian Bahne, Al-Sibahi, A. S., Steenmanns, C. S., Sanz Moreta, Lys, Sørensen, A. B. & Hamelryck, Thomas Wim, 2021, International Conference on Machine Learning, 18-24 July 2021, Virtual. PMLR, p. 10258-10267 (Proceedings of Machine Learning Research, Vol. 139).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  6. Published

    Organization and expression of genes in the genomic region surrounding the glutamine synthetase gene Gln1 from Lotus japonicus

    Thykjaer, T., Danielsen, D., She, Q. & Stougaard, J., 1997, In: Molecular Genetics and Genomics. 255, 6, p. 628-36 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Mutational analysis of the nucleotide binding site of Escherichia coli dCTP deaminase

    Thymark, M., Johansson, E., Larsen, Sine & Willemoës, Martin, 2007, In: Archives of Biochemistry and Biophysics. 470, 1, p. 20-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Hepatic PGC-1α is not essential for fasting-induced cytochrome p450 regulation in mouse liver

    Thøgersen, R., Maag Kristensen, C., Olsen, M. A., Bertram, H. C., Pilegaard, Henriette & Rasmussen, M. K., 2020, In: Biochemical Pharmacology. 172, 7 p., 113736.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation

    Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    What does evolution tell us about the structure of a functional amyloid protein?

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D. E., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Biophysical Journal. 108, 2, Supplement 1, p. 227a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  12. Published

    Structure of a functional amyloid protein subunit computed using sequence variation

    Tian, P., Boomsma, Wouter, Wang, Yong, Otzen, D., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Journal of the American Chemical Society. 137, 1, p. 22–25 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    A Monte Carlo study of the early steps of functional amyloid formation

    Tian, P., Lindorff-Larsen, Kresten, Boomsma, Wouter, Jensen, Mogens Høgh & Otzen, D. E., 2016, In: P L o S One. 11, 1, 18 p., e0146096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Robust estimation of diffusion-optimized ensembles for enhanced sampling

    Tian, P., Jónsson, S. Æ., Ferkinghoff-Borg, J., Krivov, S. V. .., Lindorff-Larsen, Kresten, Irbäck, A. & Boomsma, Wouter, 2014, In: Journal of Chemical Theory and Computation. 10, 2, p. 543–553 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Whole-genome sequence of the planarian Dugesia japonica combining Illumina and PacBio data

    Tian, Q., Guo, Q., Guo, Y., Luo, L., Kristiansen, Karsten, Han, Z., Fang, H. & Zhang, S., 2022, In: Genomics. 114, 2, 10 p., 110293.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins

    Tiberti, M., Invernizzi, G., Lambrughi, M., Inbar, Y., Schreiber, G. & Papaleo, E., 2014, In: Journal of Chemical Information and Modeling. 54, 5, p. 1537-1551 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    ENCORE: Software for Quantitative Ensemble Comparison

    Tiberti, M., Papaleo, E., Bengtsen, T., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2015, In: PLoS Computational Biology. 11, 10, 16 p., e1004415.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Efficient refolding and reconstitution of tissue factor into nanodiscs facilitates structural investigation of a multicomponent system on a lipid bilayer

    Tidemand, Frederik Grønbæk, Østergaard, H., Ploug, Michael, Kragelund, Birthe Brandt & Arleth, Lise, 2020, In: Biochimica et Biophysica Acta - Biomembranes. 1862, 6, 10 p., 183214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Treatment with the anti-IgE monoclonal antibody omalizumab in women with asthma undergoing fertility treatment: a proof-of-concept study - The PRO-ART study protocol

    Tidemandsen, C., Juul Gade, E., Ulrik, Charlotte Suppli, Nielsen, Henriette Svarre, Oxlund-Mariegaard, B. S., Kristiansen, Karsten, Freiesleben, Nina la Cour, Nøhr, B., Udengaard, H. & Backer, Vibeke, 2020, In: BMJ Open. 10, 11, 7 p., e037041.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Interpreting the molecular mechanisms of disease variants in human transmembrane proteins

    Tiemann, Johanna Katarina Sofie, Zschach, Henrike, Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Biophysical Journal. 122, 11, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Climatic warming increases isoprene emission from a subarctic heath

    Tiiva, P., Faubert, P., Michelsen, Anders, Holopainen, T., Holopainen, J. K. & Rinnan, R., 2008, In: New Phytologist. 180, p. 853-863

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Contribution of vegetation and water table on isoprene emission from boreal peatland microcosms

    Tiiva, P., Faubert, P., Räty, S., Holopainen, J. K., Holopainen, T. & Rinnan, Riikka, 2009, In: Atmospheric Environment. 43, 34, p. 5469–5475

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Monoterpene emissions in response to long-term night-time warming, elevated CO2 and extended summer drought in a temperate heath ecosystem

    Tiiva, P., Tang, Jing, Michelsen, Anders & Rinnan, Riikka, 2017, In: Science of the Total Environment. 580, p. 1056-1067 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    More is needed — Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)

    Tilic, E., Sayyari, E., Stiller, Josefin, Mirarab, S. & Rouse, G. W., 2020, In: Molecular Phylogenetics and Evolution. 9 p., 106892.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The cellular 3D printer of a marine bristle worm—chaetogenesis in Platynereis dumerilii (Audouin & Milne Edwards, 1834) (Annelida)

    Tilic, E., Herkenrath, T., Kirfel, G. & Bartolomaeus, T., 2023, In: Cell and Tissue Research. 391, p. 305-322

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)

    Tilic, E., Stiller, Josefin, Campos, E., Pleijel, F. & Rouse, G. W., 2022, In: Molecular Phylogenetics and Evolution. 166, 10 p., 107339.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Allelopathic effects of Alexandrium tamarense on other algae: evidence from mixed growth experiments

    Tillmann, U. & Hansen, Per Juel, 2009, In: Aquatic Microbial Ecology. 57, 1, p. 101-112 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Characterization of Divalent Cation Interactions with AASTY Nanodiscs

    Timcenko, Milena, Autzen, A. A. A. & Autzen, Henriette Elisabeth, 2022, In: ACS Applied Polymer Materials. 4, 2, p. 1071-1083

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Diffusion-driven instability in a predator-prey system with time-varying diffusitivities

    Timm, U. & Okubo, A., 1992, In: J. Math. Biol.. 30, p. 307-320

    Research output: Contribution to journal › Journal article › Research

  30. Published

    Self- and mutual shading effect on competing algal distribution

    Timm, U., Tataro, S. & Okubo, A., 1991, In: Nonlinear Analysis - Theory Methods and Applications. 17(6), p. 559-576

    Research output: Contribution to journal › Journal article › Research

  31. Published

    Gyrotaxis: Interaction between algae and flagellates

    Timm, U. & Okubo, A., 1995, In: Bull.Math.Biol.. 57 (5), p. 631-650

    Research output: Contribution to journal › Journal article › Research

  32. Published

    Self- and mutual shading and competition effect on competing algae distributions: Biological implications of the model

    Timm, U., Klinck, J. M. & Okubo, A., 1992, In: Ecol. Modelling. 59, p. 11-36

    Research output: Contribution to journal › Journal article › Research

  33. Published

    Vertical phytoplankton distributions: patterns and analytical solutions

    Timm, U., 1994, In: J.Biol.Syst.. 2 (2), p. 137-163

    Research output: Contribution to journal › Journal article › Research

  34. Published

    Linking Arenicola marina irrigation behavior to oxygen transport and dynamics in sandy sediments

    Timmermann, K., Banta, G. T. & Glud, R. N., 2007, In: Journal of Marine Research. 64, p. 915-938

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Genetic dissection of mammalian ERAD through comparative haploid and CRISPR forward genetic screens

    Timms, R. T., Menzies, S. A., Tchasovnikarova, I. A., Christensen, L. C., Williamson, J. C., Antrobus, R., Dougan, G., Ellgaard, Lars & Lehner, P. J., 2016, In: Nature Communications. 7, 10 p., 11786.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Distribution of protozoa in scots pine mycorrhizospheres

    Timonen, S., Christensen, Søren & Ekelund, Flemming, 2004, In: Soil Biology & Biochemistry. 36, p. 1987-1993

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Purification and characterization of 26S proteasomes from human and mouse spermatozoa

    Tipler, C. P., Hutchon, S. P., Hendil, K. A. B., Tanaka, K., Fishel, S. & Mayer, R. J., 1998, In: Molecular Human Reproduction. Vol. 3 nr. 12, p. 1053-1060

    Research output: Contribution to journal › Journal article › Research

  38. Published

    Effects of temperature on specific dynamic action in Atlantic cod Gadus morhua

    Tirsgård, B., Svendsen, J. C. & Steffensen, John Fleng, 2015, In: Fish Physiology & Biochemistry. 41, 1, p. 41-50 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    The effect of temperature and body size on metabolic scope of activity in juvenile Atlantic cod Gadus morhua L.

    Tirsgård, B., Behrens, J. W. & Steffensen, John Fleng, 2015, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 179, p. 89-94 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    The Effects of Temperature, Hypoxia and Hypercapnia on the Metabolism of Atlantic Cod Gadus morhua

    Tirsgård, B., 2013, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    Prolonged SDA and reduced digestive efficiency under elevated CO2 may explain reduced growth in Atlantic cod (Gadus morhua)

    Tirsgård, B., Moran, D. & Steffensen, John Fleng, 2015, In: Aquatic Toxicology. 158, p. 171-180 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    High reproduction, but low biomass: mortality estimates of the copepod Acartia tonsa in a hyper-eutrophic estuary

    Tiselius, P., Borg, C. M. A., Hansen, B. W., Hansen, Per Juel, Nielsen, T. G. & Vismann, Bent, 2008, In: Aquatic Biology. 2, p. 93-103

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Metal concentrations in Danish arable soils

    Tjell, J. C. & Hovmand, Mads Frederik, 1978, In: Acta Agriculturae Scandinavica. 28, 1, p. 81-89 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Impact of roots and rhizomes on wetland archaeology: a review

    Tjelldén, A. K. E., Kristiansen, S. M., Matthiesen, H. & Pedersen, Ole, 2015, In: Conservation and Management of Archaeological Sites. 17, 4, p. 370-391 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Successful treatment of psoriasis with adalimumab induced no changes in the gut microbiota

    Todberg, T., Egeberg, Alexander, Zachariae, Claus, Sørensen, N., Pedersen, Oluf Borbye & Skov, Lone, 2022, In: Journal of the European Academy of Dermatology and Venereology. 36, 6, p. e464-e467 4 p.

    Research output: Contribution to journal › Comment/debate › Research

  46. Published

    The nervous system of the basal mollusk Wirenia argentea (Solenogastres): a study employing immunocytochemical and 3D reconstruction techniques

    Todt, C., Bchinger, T. & Wanninger, A. W. G., 2008, In: Marine Biology Research. 4, 4, p. 290-303

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Of tests, trochs, shells, and spicules: Development of the basal mollusk Wirenia argentea (Solenogastres) and its bearing on the evolution of trochozoan larval key features

    Todt, C. & Wanninger, A., 2010, In: Frontiers in Zoology. 7, 1, p. 6

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The threatened plant intermediate wintergreen (Pyrola media) associates with a wide range of biotrophic fungi in native Scottish pine woods

    Toftegaard, T., Iason, G. R., Alexander, I. J., Rosendahl, Søren & Taylor, A. F. S., 2010, In: Biodiversity and Conservation. 19, 14, p. 3963-3971 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

    Toh, H., Yang, C., Formenti, G., Raja, K., Yan, L., Tracey, A., Chow, W., Howe, K., Bergeron, L. A., Zhang, G., Haase, B., Mountcastle, J., Fedrigo, O., Fogg, J., Kirilenko, B., Munegowda, C., Hiller, M., Jain, A., Kihara, D., Rhie, A. & 9 others, Phillippy, A. M., Swanson, S. A., Jiang, P., Clegg, D. O., Jarvis, E. D., Thomson, J. A., Stewart, R., Chaisson, M. J. P. & Bukhman, Y. V., 2022, In: BMC Biology. 20, 21 p., 245.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Quenching of bacteriochlorophyll fluorescence in chlorosomes from Chloroflexus aurantiacus by exogenous quinones

    Tokita, S., Frigaard, Niels-Ulrik, Hirota, M., Shimada, K. & Matsuura, K., 2000, In: Photochemistry and Photobiology. 72, 3, p. 345-350 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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